RNA–Protein interactions for RNA: ENST00000563112.1

CLK3-210, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 665 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-210ENST00000563112 INAVAQ3KP66 663 aa17.2■□□□□ 0.34
CLK3-210ENST00000563112 CARD16Q5EG05 197 aa17.2■□□□□ 0.34
CLK3-210ENST00000563112 ARTNQ5T4W7 220 aa17.2■□□□□ 0.34
CLK3-210ENST00000563112 FAM72AQ5TYM5 149 aa17.2■□□□□ 0.34
CLK3-210ENST00000563112 AGBL4Q5VU57 503 aa17.2■□□□□ 0.34
CLK3-210ENST00000563112 SFMBT2Q5VUG0 894 aa17.2■□□□□ 0.34
CLK3-210ENST00000563112 NAPEPLDQ6IQ20 393 aa17.2■□□□□ 0.34
CLK3-210ENST00000563112 FAM72DQ6L9T8 149 aa17.2■□□□□ 0.34
CLK3-210ENST00000563112 DBX2Q6ZNG2 339 aa17.2■□□□□ 0.34
CLK3-210ENST00000563112 TRIM69Q86WT6 500 aa17.2■□□□□ 0.34
CLK3-210ENST00000563112 FAM72BQ86X60 149 aa17.2■□□□□ 0.34
CLK3-210ENST00000563112 PCDH20Q8N6Y1 951 aaKnown RBP17.2■□□□□ 0.34
CLK3-210ENST00000563112 CDC6Q99741 560 aa17.2■□□□□ 0.34
CLK3-210ENST00000563112 CNPY3Q9BT09 278 aa17.2■□□□□ 0.34
CLK3-210ENST00000563112 SCNM1Q9BWG6 230 aa17.2■□□□□ 0.34
CLK3-210ENST00000563112 TNKS2Q9H2K2 1166 aa17.2■□□□□ 0.34
CLK3-210ENST00000563112 PREBQ9HCU5 417 aa17.2■□□□□ 0.34
CLK3-210ENST00000563112 GDF3Q9NR23 364 aa17.2■□□□□ 0.34
CLK3-210ENST00000563112 DMTF1Q9Y222 760 aa17.2■□□□□ 0.34
CLK3-210ENST00000563112 APOBEC2Q9Y235 224 aaKnown RBP17.2■□□□□ 0.34
CLK3-210ENST00000563112 PLXNA2O75051 1894 aa17.2■□□□□ 0.34
CLK3-210ENST00000563112 A0A1B0GTH6 734 aa17.19■□□□□ 0.34
CLK3-210ENST00000563112 TCRBV5S1A1TA0A578 114 aa17.19■□□□□ 0.34
CLK3-210ENST00000563112 TMCO5BA8MYB1 307 aa17.19■□□□□ 0.34
CLK3-210ENST00000563112 C10orf142B7Z368 130 aa17.19■□□□□ 0.34
CLK3-210ENST00000563112 HYAL3O43820 417 aaPredicted RBP17.19■□□□□ 0.34
CLK3-210ENST00000563112 PCDHGA12O60330 932 aa17.19■□□□□ 0.34
CLK3-210ENST00000563112 MAGEC1O60732 1142 aa17.19■□□□□ 0.34
CLK3-210ENST00000563112 RAMP2O60895 175 aa17.19■□□□□ 0.34
CLK3-210ENST00000563112 TOP3BO95985 862 aaKnown RBP17.19■□□□□ 0.34
CLK3-210ENST00000563112 CTSLP07711 333 aa17.19■□□□□ 0.34
CLK3-210ENST00000563112 SPINK2P20155 84 aa17.19■□□□□ 0.34
CLK3-210ENST00000563112 MAT2AP31153 395 aaKnown RBP17.19■□□□□ 0.34
CLK3-210ENST00000563112 L1CAMP32004 1257 aa17.19■□□□□ 0.34
CLK3-210ENST00000563112 RPL7AP62424 266 aaKnown RBP17.19■□□□□ 0.34
CLK3-210ENST00000563112 ARF5P84085 180 aa17.19■□□□□ 0.34
CLK3-210ENST00000563112 IQCB1Q15051 598 aa17.19■□□□□ 0.34
CLK3-210ENST00000563112 SETMARQ53H47 684 aaPredicted RBP17.19■□□□□ 0.34
CLK3-210ENST00000563112 ARSIQ5FYB1 569 aa17.19■□□□□ 0.34
CLK3-210ENST00000563112 KCNT1Q5JUK3 1230 aa17.19■□□□□ 0.34
CLK3-210ENST00000563112 NEK5Q6P3R8 708 aa17.19■□□□□ 0.34
CLK3-210ENST00000563112 DPY19L3Q6ZPD9 716 aa17.19■□□□□ 0.34
CLK3-210ENST00000563112 NLRP14Q86W24 1093 aa17.19■□□□□ 0.34
CLK3-210ENST00000563112 CHST14Q8NCH0 376 aa17.19■□□□□ 0.34
CLK3-210ENST00000563112 GRIN3AQ8TCU5 1115 aa17.19■□□□□ 0.34
CLK3-210ENST00000563112 ARHGEF2Q92974 986 aaKnown RBP17.19■□□□□ 0.34
CLK3-210ENST00000563112 HEPHQ9BQS7 1158 aa17.19■□□□□ 0.34
CLK3-210ENST00000563112 EDEM3Q9BZQ6 932 aa17.19■□□□□ 0.34
CLK3-210ENST00000563112 PARVAQ9NVD7 372 aa17.19■□□□□ 0.34
CLK3-210ENST00000563112 WASF3Q9UPY6 502 aa17.19■□□□□ 0.34
CLK3-210ENST00000563112 TMEM131Q92545 1883 aa17.18■□□□□ 0.34
CLK3-210ENST00000563112 A0A1W2PR77 199 aa17.18■□□□□ 0.34
CLK3-210ENST00000563112 SYCE3A1L190 88 aa17.18■□□□□ 0.34
CLK3-210ENST00000563112 TLR4O00206 839 aa17.18■□□□□ 0.34
CLK3-210ENST00000563112 RNGTTO60942 597 aaKnown RBP17.18■□□□□ 0.34
CLK3-210ENST00000563112 CBFA2T3O75081 653 aa17.18■□□□□ 0.34
CLK3-210ENST00000563112 WNT1P04628 370 aa17.18■□□□□ 0.34
CLK3-210ENST00000563112 FTH1P19P0C7X4 201 aa17.18■□□□□ 0.34
CLK3-210ENST00000563112 PTMSP20962 102 aa17.18■□□□□ 0.34
CLK3-210ENST00000563112 EPHB2P29323 1055 aa17.18■□□□□ 0.34
CLK3-210ENST00000563112 ACVRL1P37023 503 aa17.18■□□□□ 0.34
CLK3-210ENST00000563112 GRK6P43250 576 aa17.18■□□□□ 0.34
CLK3-210ENST00000563112 STAT4Q14765 748 aa17.18■□□□□ 0.34
CLK3-210ENST00000563112 POLD3Q15054 466 aaPredicted RBP17.18■□□□□ 0.34
CLK3-210ENST00000563112 KLHL40Q2TBA0 621 aa17.18■□□□□ 0.34
CLK3-210ENST00000563112 PPP1R15BQ5SWA1 713 aa17.18■□□□□ 0.34
CLK3-210ENST00000563112 ERN2Q76MJ5 926 aaKnown RBP17.18■□□□□ 0.34
CLK3-210ENST00000563112 GLRX5Q86SX6 157 aa17.18■□□□□ 0.34
CLK3-210ENST00000563112 ZNF354CQ86Y25 554 aa17.18■□□□□ 0.34
CLK3-210ENST00000563112 RYBPQ8N488 228 aaPredicted RBP17.18■□□□□ 0.34
CLK3-210ENST00000563112 MFSD2AQ8NA29 543 aa17.18■□□□□ 0.34
CLK3-210ENST00000563112 ISG20Q96AZ6 181 aaKnown RBP17.18■□□□□ 0.34
CLK3-210ENST00000563112 ARRDC3Q96B67 414 aa17.18■□□□□ 0.34
CLK3-210ENST00000563112 NAP1L5Q96NT1 182 aaPredicted RBP17.18■□□□□ 0.34
CLK3-210ENST00000563112 ELF4Q99607 663 aaPredicted RBP17.18■□□□□ 0.34
CLK3-210ENST00000563112 EPAS1Q99814 870 aa17.18■□□□□ 0.34
CLK3-210ENST00000563112 SYT11Q9BT88 431 aa17.18■□□□□ 0.34
CLK3-210ENST00000563112 FUCA2Q9BTY2 467 aa17.18■□□□□ 0.34
CLK3-210ENST00000563112 HDAC8Q9BY41 377 aa17.18■□□□□ 0.34
CLK3-210ENST00000563112 MAGEB5Q9BZ81 275 aa17.18■□□□□ 0.34
CLK3-210ENST00000563112 HAUS4Q9H6D7 363 aa17.18■□□□□ 0.34
CLK3-210ENST00000563112 CATSPERBQ9H7T0 1116 aa17.18■□□□□ 0.34
CLK3-210ENST00000563112 NDFIP2Q9NV92 336 aa17.18■□□□□ 0.34
CLK3-210ENST00000563112 AIPL1Q9NZN9 384 aa17.18■□□□□ 0.34
CLK3-210ENST00000563112 FCF1Q9Y324 198 aaKnown RBP17.18■□□□□ 0.34
CLK3-210ENST00000563112 NEUROG3Q9Y4Z2 214 aa17.18■□□□□ 0.34
CLK3-210ENST00000563112 A0A1B0GTQ1 180 aa17.17■□□□□ 0.34
CLK3-210ENST00000563112 ZSCAN5CA6NGD5 496 aaPredicted RBP17.17■□□□□ 0.34
CLK3-210ENST00000563112 PRAMEF26H0Y7S4 382 aa17.17■□□□□ 0.34
CLK3-210ENST00000563112 YKT6O15498 198 aa17.17■□□□□ 0.34
CLK3-210ENST00000563112 CREB3O43889 395 aa17.17■□□□□ 0.34
CLK3-210ENST00000563112 LEFTY1O75610 366 aa17.17■□□□□ 0.34
CLK3-210ENST00000563112 ARRB1P49407 418 aaPredicted RBP17.17■□□□□ 0.34
CLK3-210ENST00000563112 KLHL30Q0D2K2 578 aa17.17■□□□□ 0.34
CLK3-210ENST00000563112 OVGP1Q12889 678 aa17.17■□□□□ 0.34
CLK3-210ENST00000563112 NR1I3Q14994 352 aa17.17■□□□□ 0.34
CLK3-210ENST00000563112 PIP5KL1Q5T9C9 394 aa17.17■□□□□ 0.34
CLK3-210ENST00000563112 UNQ6494/PRO21346Q6UXR6 183 aa17.17■□□□□ 0.34
CLK3-210ENST00000563112 TMC6Q7Z403 805 aa17.17■□□□□ 0.34
CLK3-210ENST00000563112 IQCHQ86VS3 1027 aa17.17■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms