RNA–Protein interactions for RNA: ENST00000562754.1

VPS4A-202, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 2

Gene VPS4A, Length 633 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-202ENST00000562754 ATP5BP06576 529 aaKnown RBP16.88■□□□□ 0.29
VPS4A-202ENST00000562754 SRPRAP08240 638 aaKnown RBP16.88■□□□□ 0.29
VPS4A-202ENST00000562754 ETS1P14921 441 aa16.88■□□□□ 0.29
VPS4A-202ENST00000562754 TNFRSF4P43489 277 aa16.88■□□□□ 0.29
VPS4A-202ENST00000562754 KIR2DL1P43626 348 aaPredicted RBP16.88■□□□□ 0.29
VPS4A-202ENST00000562754 MMP13P45452 471 aa16.88■□□□□ 0.29
VPS4A-202ENST00000562754 VASPP50552 380 aaPredicted RBP16.88■□□□□ 0.29
VPS4A-202ENST00000562754 GEMIN4P57678 1058 aaKnown RBP16.88■□□□□ 0.29
VPS4A-202ENST00000562754 MRPS25P82663 173 aaKnown RBP16.88■□□□□ 0.29
VPS4A-202ENST00000562754 PRKCQQ04759 706 aa16.88■□□□□ 0.29
VPS4A-202ENST00000562754 RFTN1Q14699 578 aaPredicted RBP16.88■□□□□ 0.29
VPS4A-202ENST00000562754 EMC10Q5UCC4 262 aa16.88■□□□□ 0.29
VPS4A-202ENST00000562754 C22orf39Q6P5X5 142 aa16.88■□□□□ 0.29
VPS4A-202ENST00000562754 ZNF567Q8N184 647 aa16.88■□□□□ 0.29
VPS4A-202ENST00000562754 ZNF687Q8N1G0 1237 aa16.88■□□□□ 0.29
VPS4A-202ENST00000562754 PGBD5Q8N414 524 aa16.88■□□□□ 0.29
VPS4A-202ENST00000562754 CCDC110Q8TBZ0 833 aa16.88■□□□□ 0.29
VPS4A-202ENST00000562754 SLCO2A1Q92959 643 aa16.88■□□□□ 0.29
VPS4A-202ENST00000562754 ZDHHC4Q9NPG8 344 aa16.88■□□□□ 0.29
VPS4A-202ENST00000562754 RBM22Q9NW64 420 aaKnown RBP eCLIP16.88■□□□□ 0.29
VPS4A-202ENST00000562754 NEU2Q9Y3R4 380 aa16.88■□□□□ 0.29
VPS4A-202ENST00000562754 NCOR1O75376 2440 aa16.87■□□□□ 0.29
VPS4A-202ENST00000562754 C5orf60A6NFR6 353 aa16.87■□□□□ 0.29
VPS4A-202ENST00000562754 MAN2B1O00754 1011 aa16.87■□□□□ 0.29
VPS4A-202ENST00000562754 ATP9BO43861 1147 aa16.87■□□□□ 0.29
VPS4A-202ENST00000562754 ZNF821O75541 412 aaPredicted RBP16.87■□□□□ 0.29
VPS4A-202ENST00000562754 ZNF189O75820 626 aaPredicted RBP16.87■□□□□ 0.29
VPS4A-202ENST00000562754 ECEL1O95672 775 aa16.87■□□□□ 0.29
VPS4A-202ENST00000562754 IFNB1P01574 187 aa16.87■□□□□ 0.29
VPS4A-202ENST00000562754 ZSCAN5DPP0CG00 497 aa16.87■□□□□ 0.29
VPS4A-202ENST00000562754 DRD1P21728 446 aa16.87■□□□□ 0.29
VPS4A-202ENST00000562754 STIP1P31948 543 aaKnown RBP16.87■□□□□ 0.29
VPS4A-202ENST00000562754 RGRP47804 291 aa16.87■□□□□ 0.29
VPS4A-202ENST00000562754 RENBPP51606 427 aa16.87■□□□□ 0.29
VPS4A-202ENST00000562754 SEC13P55735 322 aa16.87■□□□□ 0.29
VPS4A-202ENST00000562754 SLC20A2Q08357 652 aa16.87■□□□□ 0.29
VPS4A-202ENST00000562754 GRSF1Q12849 480 aaKnown RBP eCLIP16.87■□□□□ 0.29
VPS4A-202ENST00000562754 CCINQ13939 588 aa16.87■□□□□ 0.29
VPS4A-202ENST00000562754 ZNF234Q14588 700 aa16.87■□□□□ 0.29
VPS4A-202ENST00000562754 ZNF235Q14590 738 aa16.87■□□□□ 0.29
VPS4A-202ENST00000562754 TEX44Q53QW1 395 aa16.87■□□□□ 0.29
VPS4A-202ENST00000562754 INO80DQ53TQ3 878 aaPredicted RBP16.87■□□□□ 0.29
VPS4A-202ENST00000562754 MARC1Q5VT66 337 aa16.87■□□□□ 0.29
VPS4A-202ENST00000562754 SIX5Q8N196 739 aa16.87■□□□□ 0.29
VPS4A-202ENST00000562754 MMGT1Q8N4V1 131 aa16.87■□□□□ 0.29
VPS4A-202ENST00000562754 ATP11CQ8NB49 1132 aa16.87■□□□□ 0.29
VPS4A-202ENST00000562754 TSEN2Q8NCE0 465 aaKnown RBP16.87■□□□□ 0.29
VPS4A-202ENST00000562754 NSMCE1Q8WV22 266 aa16.87■□□□□ 0.29
VPS4A-202ENST00000562754 UCMAQ8WVF2 138 aa16.87■□□□□ 0.29
VPS4A-202ENST00000562754 CASKIN2Q8WXE0 1202 aa16.87■□□□□ 0.29
VPS4A-202ENST00000562754 EXOC4Q96A65 974 aa16.87■□□□□ 0.29
VPS4A-202ENST00000562754 SPATA13Q96N96 652 aa16.87■□□□□ 0.29
VPS4A-202ENST00000562754 UHRF1Q96T88 793 aaPredicted RBP16.87■□□□□ 0.29
VPS4A-202ENST00000562754 ACOX2Q99424 681 aa16.87■□□□□ 0.29
VPS4A-202ENST00000562754 CINPQ9BW66 212 aaPredicted RBP16.87■□□□□ 0.29
VPS4A-202ENST00000562754 NT5MQ9NPB1 228 aa16.87■□□□□ 0.29
VPS4A-202ENST00000562754 THAP10Q9P2Z0 257 aaPredicted RBP16.87■□□□□ 0.29
VPS4A-202ENST00000562754 SEPT3Q9UH03 358 aa16.87■□□□□ 0.29
VPS4A-202ENST00000562754 NDRG2Q9UN36 371 aaKnown RBP16.87■□□□□ 0.29
VPS4A-202ENST00000562754 STARD13Q9Y3M8 1113 aa16.87■□□□□ 0.29
VPS4A-202ENST00000562754 CKAP5Q14008 2032 aa16.86■□□□□ 0.29
VPS4A-202ENST00000562754 TTC34A8MYJ7 566 aa16.86■□□□□ 0.29
VPS4A-202ENST00000562754 TTI1O43156 1089 aa16.86■□□□□ 0.29
VPS4A-202ENST00000562754 ZBTB24O43167 697 aaPredicted RBP16.86■□□□□ 0.29
VPS4A-202ENST00000562754 RAD51CO43502 376 aa16.86■□□□□ 0.29
VPS4A-202ENST00000562754 GCATO75600 419 aa16.86■□□□□ 0.29
VPS4A-202ENST00000562754 TARSP26639 723 aaKnown RBP16.86■□□□□ 0.29
VPS4A-202ENST00000562754 CD68P34810 354 aaPredicted RBP16.86■□□□□ 0.29
VPS4A-202ENST00000562754 STARD6P59095 220 aa16.86■□□□□ 0.29
VPS4A-202ENST00000562754 MAXP61244 160 aa16.86■□□□□ 0.29
VPS4A-202ENST00000562754 ZXDAP98168 799 aa16.86■□□□□ 0.29
VPS4A-202ENST00000562754 DR1Q01658 176 aa16.86■□□□□ 0.29
VPS4A-202ENST00000562754 LMNB2Q03252 620 aa16.86■□□□□ 0.29
VPS4A-202ENST00000562754 TRIP13Q15645 432 aaPredicted RBP16.86■□□□□ 0.29
VPS4A-202ENST00000562754 DLG2Q15700 870 aa16.86■□□□□ 0.29
VPS4A-202ENST00000562754 FNDC3BQ53EP0 1204 aaKnown RBP16.86■□□□□ 0.29
VPS4A-202ENST00000562754 DGKKQ5KSL6 1271 aa16.86■□□□□ 0.29
VPS4A-202ENST00000562754 ANKRD20A2Q5SQ80 823 aa16.86■□□□□ 0.29
VPS4A-202ENST00000562754 ANKRD20A1Q5TYW2 823 aa16.86■□□□□ 0.29
VPS4A-202ENST00000562754 ANKRD20A3Q5VUR7 823 aa16.86■□□□□ 0.29
VPS4A-202ENST00000562754 ZNF852Q6ZMS4 543 aa16.86■□□□□ 0.29
VPS4A-202ENST00000562754 NUDT18Q6ZVK8 323 aa16.86■□□□□ 0.29
VPS4A-202ENST00000562754 GSTA5Q7RTV2 222 aa16.86■□□□□ 0.29
VPS4A-202ENST00000562754 JAMLQ86YT9 394 aa16.86■□□□□ 0.29
VPS4A-202ENST00000562754 ZNF366Q8N895 744 aa16.86■□□□□ 0.29
VPS4A-202ENST00000562754 GRK7Q8WTQ7 553 aa16.86■□□□□ 0.29
VPS4A-202ENST00000562754 FRS2Q8WU20 508 aa16.86■□□□□ 0.29
VPS4A-202ENST00000562754 EXOC2Q96KP1 924 aa16.86■□□□□ 0.29
VPS4A-202ENST00000562754 TEKT5Q96M29 485 aa16.86■□□□□ 0.29
VPS4A-202ENST00000562754 RUNDC3BQ96NL0 473 aa16.86■□□□□ 0.29
VPS4A-202ENST00000562754 AGAP3Q96P47 875 aa16.86■□□□□ 0.29
VPS4A-202ENST00000562754 PSKH2Q96QS6 385 aa16.86■□□□□ 0.29
VPS4A-202ENST00000562754 VAT1Q99536 393 aa16.86■□□□□ 0.29
VPS4A-202ENST00000562754 MGME1Q9BQP7 344 aa16.86■□□□□ 0.29
VPS4A-202ENST00000562754 TRIM51Q9BSJ1 452 aa16.86■□□□□ 0.29
VPS4A-202ENST00000562754 MTG2Q9H4K7 406 aa16.86■□□□□ 0.29
VPS4A-202ENST00000562754 PCDH9Q9HC56 1237 aa16.86■□□□□ 0.29
VPS4A-202ENST00000562754 KLHL8Q9P2G9 620 aaPredicted RBP16.86■□□□□ 0.29
VPS4A-202ENST00000562754 ATP8A1Q9Y2Q0 1164 aa16.86■□□□□ 0.29
VPS4A-202ENST00000562754 F5H423 210 aaPredicted RBP16.85■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms