RNA–Protein interactions for RNA: ENST00000562078.5

CLK3-206, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,455 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-206ENST00000562078 MMP3P08254 477 aa13.52□□□□□ -0.25
CLK3-206ENST00000562078 COX4I1P13073 169 aa13.52□□□□□ -0.25
CLK3-206ENST00000562078 RAP1GAPP47736 663 aa13.52□□□□□ -0.25
CLK3-206ENST00000562078 PKNOX1P55347 436 aa13.52□□□□□ -0.25
CLK3-206ENST00000562078 TPTEP56180 551 aa13.52□□□□□ -0.25
CLK3-206ENST00000562078 PRAMEP78395 509 aa13.52□□□□□ -0.25
CLK3-206ENST00000562078 PMS2P3Q13401 168 aa13.52□□□□□ -0.25
CLK3-206ENST00000562078 ZFYVE27Q5T4F4 411 aa13.52□□□□□ -0.25
CLK3-206ENST00000562078 ZC3H7AQ8IWR0 971 aaKnown RBP13.52□□□□□ -0.25
CLK3-206ENST00000562078 CPSF7Q8N684 471 aaKnown RBP13.52□□□□□ -0.25
CLK3-206ENST00000562078 FAM47BQ8NA70 645 aa13.52□□□□□ -0.25
CLK3-206ENST00000562078 OR7G1Q8NGA0 311 aa13.52□□□□□ -0.25
CLK3-206ENST00000562078 CAPSLQ8WWF8 208 aa13.52□□□□□ -0.25
CLK3-206ENST00000562078 CPT1BQ92523 772 aa13.52□□□□□ -0.25
CLK3-206ENST00000562078 VCPIP1Q96JH7 1222 aa13.52□□□□□ -0.25
CLK3-206ENST00000562078 FAR2Q96K12 515 aa13.52□□□□□ -0.25
CLK3-206ENST00000562078 ALPK1Q96QP1 1244 aa13.52□□□□□ -0.25
CLK3-206ENST00000562078 NFKBIZQ9BYH8 718 aa13.52□□□□□ -0.25
CLK3-206ENST00000562078 FRMD8Q9BZ67 464 aaPredicted RBP13.52□□□□□ -0.25
CLK3-206ENST00000562078 MRPL47Q9HD33 250 aaKnown RBP13.52□□□□□ -0.25
CLK3-206ENST00000562078 SLC8A2Q9UPR5 921 aa13.52□□□□□ -0.25
CLK3-206ENST00000562078 IFT52Q9Y366 437 aa13.52□□□□□ -0.25
CLK3-206ENST00000562078 AIM2O14862 343 aa13.51□□□□□ -0.25
CLK3-206ENST00000562078 RSL1D1O76021 490 aaKnown RBP13.51□□□□□ -0.25
CLK3-206ENST00000562078 CAPNS1P04632 268 aa13.51□□□□□ -0.25
CLK3-206ENST00000562078 ZNF865P0CJ78 1059 aaPredicted RBP13.51□□□□□ -0.25
CLK3-206ENST00000562078 NFX1Q12986 1120 aaKnown RBP13.51□□□□□ -0.25
CLK3-206ENST00000562078 ZFP1Q6P2D0 407 aa13.51□□□□□ -0.25
CLK3-206ENST00000562078 RNF19BQ6ZMZ0 732 aa13.51□□□□□ -0.25
CLK3-206ENST00000562078 RFPL4BQ6ZWI9 263 aa13.51□□□□□ -0.25
CLK3-206ENST00000562078 PIWIL2Q8TC59 973 aaKnown RBP13.51□□□□□ -0.25
CLK3-206ENST00000562078 HM13Q8TCT9 377 aa13.51□□□□□ -0.25
CLK3-206ENST00000562078 TFAP2BQ92481 460 aa13.51□□□□□ -0.25
CLK3-206ENST00000562078 ZNF597Q96LX8 424 aa13.51□□□□□ -0.25
CLK3-206ENST00000562078 C16orf70Q9BSU1 422 aa13.51□□□□□ -0.25
CLK3-206ENST00000562078 PDZD7Q9H5P4 517 aa13.51□□□□□ -0.25
CLK3-206ENST00000562078 RIC8BQ9NVN3 520 aa13.51□□□□□ -0.25
CLK3-206ENST00000562078 THAP1Q9NVV9 213 aa13.51□□□□□ -0.25
CLK3-206ENST00000562078 DDX56Q9NY93 547 aaKnown RBP13.51□□□□□ -0.25
CLK3-206ENST00000562078 SIX4Q9UIU6 781 aa13.51□□□□□ -0.25
CLK3-206ENST00000562078 CENPFP49454 3210 aa13.51□□□□□ -0.25
CLK3-206ENST00000562078 TLR3O15455 904 aaKnown RBP13.51□□□□□ -0.25
CLK3-206ENST00000562078 STAG3L1P0CL83 205 aa13.51□□□□□ -0.25
CLK3-206ENST00000562078 MMP8P22894 467 aa13.51□□□□□ -0.25
CLK3-206ENST00000562078 IDH3AP50213 366 aa13.51□□□□□ -0.25
CLK3-206ENST00000562078 GDF10P55107 478 aa13.51□□□□□ -0.25
CLK3-206ENST00000562078 MLLT10P55197 1068 aa13.51□□□□□ -0.25
CLK3-206ENST00000562078 RPL7AP62424 266 aaKnown RBP13.51□□□□□ -0.25
CLK3-206ENST00000562078 GALNT2Q10471 571 aa13.51□□□□□ -0.25
CLK3-206ENST00000562078 BMPR2Q13873 1038 aa13.51□□□□□ -0.25
CLK3-206ENST00000562078 AMHR2Q16671 573 aa13.51□□□□□ -0.25
CLK3-206ENST00000562078 DGKDQ16760 1214 aa13.51□□□□□ -0.25
CLK3-206ENST00000562078 LDLRAP1Q5SW96 308 aa13.51□□□□□ -0.25
CLK3-206ENST00000562078 PTAR1Q7Z6K3 402 aaPredicted RBP13.51□□□□□ -0.25
CLK3-206ENST00000562078 SNX29P2Q8IUI4 249 aa13.51□□□□□ -0.25
CLK3-206ENST00000562078 MMAAQ8IVH4 418 aaKnown RBP13.51□□□□□ -0.25
CLK3-206ENST00000562078 RHOT1Q8IXI2 618 aa13.51□□□□□ -0.25
CLK3-206ENST00000562078 LINC01465Q8N7H1 131 aa13.51□□□□□ -0.25
CLK3-206ENST00000562078 LILRB4Q8NHJ6 448 aa13.51□□□□□ -0.25
CLK3-206ENST00000562078 GADD45GIP1Q8TAE8 222 aaPredicted RBP13.51□□□□□ -0.25
CLK3-206ENST00000562078 USP13Q92995 863 aaPredicted RBP13.51□□□□□ -0.25
CLK3-206ENST00000562078 ACDQ96AP0 544 aa13.51□□□□□ -0.25
CLK3-206ENST00000562078 CDRT15Q96T59 188 aa13.51□□□□□ -0.25
CLK3-206ENST00000562078 SLC29A1Q99808 456 aa13.51□□□□□ -0.25
CLK3-206ENST00000562078 NPLQ9BXD5 320 aaPredicted RBP13.51□□□□□ -0.25
CLK3-206ENST00000562078 GABRQQ9UN88 632 aa13.51□□□□□ -0.25
CLK3-206ENST00000562078 PDCD11Q14690 1871 aaKnown RBP13.5□□□□□ -0.25
CLK3-206ENST00000562078 LACTBL1A8MY62 500 aa13.5□□□□□ -0.25
CLK3-206ENST00000562078 H3BRB1 525 aa13.5□□□□□ -0.25
CLK3-206ENST00000562078 GMNNO75496 209 aa13.5□□□□□ -0.25
CLK3-206ENST00000562078 TMEM63AO94886 807 aa13.5□□□□□ -0.25
CLK3-206ENST00000562078 IL18RAPO95256 599 aa13.5□□□□□ -0.25
CLK3-206ENST00000562078 EIF2S1P05198 315 aaKnown RBP13.5□□□□□ -0.25
CLK3-206ENST00000562078 BPGMP07738 259 aa13.5□□□□□ -0.25
CLK3-206ENST00000562078 TCF4P15884 667 aa13.5□□□□□ -0.25
CLK3-206ENST00000562078 NUDT2P50583 147 aa13.5□□□□□ -0.25
CLK3-206ENST00000562078 IKBKEQ14164 716 aa13.5□□□□□ -0.25
CLK3-206ENST00000562078 JADE1Q6IE81 842 aa13.5□□□□□ -0.25
CLK3-206ENST00000562078 ATG14Q6ZNE5 492 aa13.5□□□□□ -0.25
CLK3-206ENST00000562078 TLK2Q86UE8 772 aa13.5□□□□□ -0.25
CLK3-206ENST00000562078 TTC30AQ86WT1 665 aa13.5□□□□□ -0.25
CLK3-206ENST00000562078 KATNAL2Q8IYT4 538 aa13.5□□□□□ -0.25
CLK3-206ENST00000562078 C1orf127Q8N9H9 656 aa13.5□□□□□ -0.25
CLK3-206ENST00000562078 PPP1R14CQ8TAE6 165 aa13.5□□□□□ -0.25
CLK3-206ENST00000562078 GABPB2Q8TAK5 448 aaPredicted RBP13.5□□□□□ -0.25
CLK3-206ENST00000562078 DOK1Q99704 481 aa13.5□□□□□ -0.25
CLK3-206ENST00000562078 PSD2Q9BQI7 771 aa13.5□□□□□ -0.25
CLK3-206ENST00000562078 OSBPL11Q9BXB4 747 aa13.5□□□□□ -0.25
CLK3-206ENST00000562078 TDRD1Q9BXT4 1180 aaKnown RBP13.5□□□□□ -0.25
CLK3-206ENST00000562078 MROQ9BYG7 248 aa13.5□□□□□ -0.25
CLK3-206ENST00000562078 PARVAQ9NVD7 372 aa13.5□□□□□ -0.25
CLK3-206ENST00000562078 COL1A2P08123 1366 aa13.5□□□□□ -0.25
CLK3-206ENST00000562078 A0A087WXM4 84 aa13.5□□□□□ -0.25
CLK3-206ENST00000562078 ZBTB14O43829 449 aa13.5□□□□□ -0.25
CLK3-206ENST00000562078 CLASP2O75122 1294 aaKnown RBP13.5□□□□□ -0.25
CLK3-206ENST00000562078 LSM8O95777 96 aaKnown RBP13.5□□□□□ -0.25
CLK3-206ENST00000562078 ITGB3P05106 788 aa13.5□□□□□ -0.25
CLK3-206ENST00000562078 MCF2P10911 925 aa13.5□□□□□ -0.25
CLK3-206ENST00000562078 ARF4P18085 180 aaPredicted RBP13.5□□□□□ -0.25
CLK3-206ENST00000562078 DCKP27707 260 aa13.5□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms