RNA–Protein interactions for RNA: ENST00000560628.1

LDLR-214, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 535 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-214ENST00000560628 PRNPP04156 253 aa10.44□□□□□ -0.74
LDLR-214ENST00000560628 CAPNS1P04632 268 aa10.44□□□□□ -0.74
LDLR-214ENST00000560628 PLEKP08567 350 aaPredicted RBP10.44□□□□□ -0.74
LDLR-214ENST00000560628 KRT3P12035 628 aa10.44□□□□□ -0.74
LDLR-214ENST00000560628 UNGP13051 313 aaPredicted RBP10.44□□□□□ -0.74
LDLR-214ENST00000560628 RFC1P35251 1148 aaPredicted RBP10.44□□□□□ -0.74
LDLR-214ENST00000560628 NSFP46459 744 aaKnown RBP10.44□□□□□ -0.74
LDLR-214ENST00000560628 ARRB1P49407 418 aaPredicted RBP10.44□□□□□ -0.74
LDLR-214ENST00000560628 CLCN6P51797 869 aa10.44□□□□□ -0.74
LDLR-214ENST00000560628 MYL5Q02045 173 aa10.44□□□□□ -0.74
LDLR-214ENST00000560628 SLC20A2Q08357 652 aa10.44□□□□□ -0.74
LDLR-214ENST00000560628 PTP4A2Q12974 167 aa10.44□□□□□ -0.74
LDLR-214ENST00000560628 DNAJC3Q13217 504 aa10.44□□□□□ -0.74
LDLR-214ENST00000560628 STX1AQ16623 288 aa10.44□□□□□ -0.74
LDLR-214ENST00000560628 CLEC16AQ2KHT3 1053 aa10.44□□□□□ -0.74
LDLR-214ENST00000560628 INAVAQ3KP66 663 aa10.44□□□□□ -0.74
LDLR-214ENST00000560628 ARL13BQ3SXY8 428 aa10.44□□□□□ -0.74
LDLR-214ENST00000560628 RETSATQ6NUM9 610 aa10.44□□□□□ -0.74
LDLR-214ENST00000560628 C22orf39Q6P5X5 142 aa10.44□□□□□ -0.74
LDLR-214ENST00000560628 DHRS13Q6UX07 377 aa10.44□□□□□ -0.74
LDLR-214ENST00000560628 ZNF783Q6ZMS7 281 aa10.44□□□□□ -0.74
LDLR-214ENST00000560628 TRIM72Q6ZMU5 477 aa10.44□□□□□ -0.74
LDLR-214ENST00000560628 LEKR1Q6ZMV7 388 aa10.44□□□□□ -0.74
LDLR-214ENST00000560628 TRIM69Q86WT6 500 aa10.44□□□□□ -0.74
LDLR-214ENST00000560628 CCDC185Q8N715 623 aa10.44□□□□□ -0.74
LDLR-214ENST00000560628 KLHDC7BQ96G42 594 aa10.44□□□□□ -0.74
LDLR-214ENST00000560628 SELENOOQ9BVL4 669 aa10.44□□□□□ -0.74
LDLR-214ENST00000560628 PREBQ9HCU5 417 aa10.44□□□□□ -0.74
LDLR-214ENST00000560628 FZD3Q9NPG1 666 aa10.44□□□□□ -0.74
LDLR-214ENST00000560628 NDFIP2Q9NV92 336 aa10.44□□□□□ -0.74
LDLR-214ENST00000560628 PPARGC1AQ9UBK2 798 aaKnown RBP10.44□□□□□ -0.74
LDLR-214ENST00000560628 IL36AQ9UHA7 158 aa10.44□□□□□ -0.74
LDLR-214ENST00000560628 TPX2Q9ULW0 747 aaKnown RBP10.44□□□□□ -0.74
LDLR-214ENST00000560628 DMTF1Q9Y222 760 aa10.44□□□□□ -0.74
LDLR-214ENST00000560628 FCF1Q9Y324 198 aaKnown RBP10.44□□□□□ -0.74
LDLR-214ENST00000560628 PLXNA2O75051 1894 aa10.44□□□□□ -0.74
LDLR-214ENST00000560628 LRRC10BA6NIK2 292 aa10.43□□□□□ -0.74
LDLR-214ENST00000560628 GOLGA6L22H0YM25 854 aa10.43□□□□□ -0.74
LDLR-214ENST00000560628 ENC1O14682 589 aa10.43□□□□□ -0.74
LDLR-214ENST00000560628 SDC3O75056 442 aa10.43□□□□□ -0.74
LDLR-214ENST00000560628 GPD1P21695 349 aa10.43□□□□□ -0.74
LDLR-214ENST00000560628 EPHA8P29322 1005 aaPredicted RBP10.43□□□□□ -0.74
LDLR-214ENST00000560628 GKP32189 559 aa10.43□□□□□ -0.74
LDLR-214ENST00000560628 NUDT1P36639 197 aa10.43□□□□□ -0.74
LDLR-214ENST00000560628 PTPN9P43378 593 aa10.43□□□□□ -0.74
LDLR-214ENST00000560628 RXRGP48443 463 aa10.43□□□□□ -0.74
LDLR-214ENST00000560628 SERPINH1P50454 418 aaKnown RBP10.43□□□□□ -0.74
LDLR-214ENST00000560628 HDAC4P56524 1084 aa10.43□□□□□ -0.74
LDLR-214ENST00000560628 CLDN6P56747 220 aa10.43□□□□□ -0.74
LDLR-214ENST00000560628 CLDN2P57739 230 aa10.43□□□□□ -0.74
LDLR-214ENST00000560628 ARF5P84085 180 aa10.43□□□□□ -0.74
LDLR-214ENST00000560628 CCDC15Q0P6D6 951 aa10.43□□□□□ -0.74
LDLR-214ENST00000560628 NCAPHQ15003 741 aa10.43□□□□□ -0.74
LDLR-214ENST00000560628 ZNF284Q2VY69 593 aa10.43□□□□□ -0.74
LDLR-214ENST00000560628 SETMARQ53H47 684 aaPredicted RBP10.43□□□□□ -0.74
LDLR-214ENST00000560628 CARD16Q5EG05 197 aa10.43□□□□□ -0.74
LDLR-214ENST00000560628 SEL1L3Q68CR1 1132 aa10.43□□□□□ -0.74
LDLR-214ENST00000560628 SCYL2Q6P3W7 929 aa10.43□□□□□ -0.74
LDLR-214ENST00000560628 WDR59Q6PJI9 974 aa10.43□□□□□ -0.74
LDLR-214ENST00000560628 ERN2Q76MJ5 926 aaKnown RBP10.43□□□□□ -0.74
LDLR-214ENST00000560628 STRADAQ7RTN6 431 aa10.43□□□□□ -0.74
LDLR-214ENST00000560628 HORMAD1Q86X24 394 aa10.43□□□□□ -0.74
LDLR-214ENST00000560628 PHF13Q86YI8 300 aaPredicted RBP10.43□□□□□ -0.74
LDLR-214ENST00000560628 RYBPQ8N488 228 aaPredicted RBP10.43□□□□□ -0.74
LDLR-214ENST00000560628 OR6K2Q8NGY2 324 aa10.43□□□□□ -0.74
LDLR-214ENST00000560628 MDM1Q8TC05 714 aa10.43□□□□□ -0.74
LDLR-214ENST00000560628 FAM172AQ8WUF8 416 aa10.43□□□□□ -0.74
LDLR-214ENST00000560628 CENPIQ92674 756 aaPredicted RBP10.43□□□□□ -0.74
LDLR-214ENST00000560628 ARHGEF2Q92974 986 aaKnown RBP10.43□□□□□ -0.74
LDLR-214ENST00000560628 CNDP2Q96KP4 475 aaKnown RBP10.43□□□□□ -0.74
LDLR-214ENST00000560628 AGPAT1Q99943 283 aa10.43□□□□□ -0.74
LDLR-214ENST00000560628 HEPHQ9BQS7 1158 aa10.43□□□□□ -0.74
LDLR-214ENST00000560628 TM6SF2Q9BZW4 377 aa10.43□□□□□ -0.74
LDLR-214ENST00000560628 OSBPL2Q9H1P3 480 aa10.43□□□□□ -0.74
LDLR-214ENST00000560628 HSD3B7Q9H2F3 369 aa10.43□□□□□ -0.74
LDLR-214ENST00000560628 CCDC86Q9H6F5 360 aaKnown RBP10.43□□□□□ -0.74
LDLR-214ENST00000560628 CAAP1Q9H8G2 361 aa10.43□□□□□ -0.74
LDLR-214ENST00000560628 ERVMER34-1Q9H9K5 563 aa10.43□□□□□ -0.74
LDLR-214ENST00000560628 HECAQ9UBI9 543 aaPredicted RBP10.43□□□□□ -0.74
LDLR-214ENST00000560628 ZFR2Q9UPR6 939 aaKnown RBP10.43□□□□□ -0.74
LDLR-214ENST00000560628 WASF2Q9Y6W5 498 aa10.43□□□□□ -0.74
LDLR-214ENST00000560628 DOCK9Q9BZ29 2069 aa10.42□□□□□ -0.74
LDLR-214ENST00000560628 TRABD2BA6NFA1 517 aa10.42□□□□□ -0.74
LDLR-214ENST00000560628 SIGLEC16A6NMB1 481 aa10.42□□□□□ -0.74
LDLR-214ENST00000560628 YKT6O15498 198 aa10.42□□□□□ -0.74
LDLR-214ENST00000560628 LRIG2O94898 1065 aa10.42□□□□□ -0.74
LDLR-214ENST00000560628 CD160O95971 181 aa10.42□□□□□ -0.74
LDLR-214ENST00000560628 THEGLP0DJG4 465 aa10.42□□□□□ -0.74
LDLR-214ENST00000560628 ATP1A3P13637 1013 aa10.42□□□□□ -0.74
LDLR-214ENST00000560628 RHOQP17081 205 aa10.42□□□□□ -0.74
LDLR-214ENST00000560628 CCNHP51946 323 aaPredicted RBP10.42□□□□□ -0.74
LDLR-214ENST00000560628 MAPK8IP2Q13387 824 aaPredicted RBP10.42□□□□□ -0.74
LDLR-214ENST00000560628 CCDC183Q5T5S1 534 aa10.42□□□□□ -0.74
LDLR-214ENST00000560628 MANEALQ5VSG8 457 aa10.42□□□□□ -0.74
LDLR-214ENST00000560628 NEK5Q6P3R8 708 aa10.42□□□□□ -0.74
LDLR-214ENST00000560628 FBXL19Q6PCT2 694 aa10.42□□□□□ -0.74
LDLR-214ENST00000560628 APTXQ7Z2E3 356 aaKnown RBP10.42□□□□□ -0.74
LDLR-214ENST00000560628 IQCHQ86VS3 1027 aa10.42□□□□□ -0.74
LDLR-214ENST00000560628 NLRP14Q86W24 1093 aa10.42□□□□□ -0.74
LDLR-214ENST00000560628 PROSER1Q86XN7 944 aa10.42□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 61.3 ms