RNA–Protein interactions for RNA: ENST00000560467.1

LDLR-212, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 928 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-212ENST00000560467 PTPRDP23468 1912 aa12.09□□□□□ -0.47
LDLR-212ENST00000560467 KCNU1A8MYU2 1149 aa12.08□□□□□ -0.48
LDLR-212ENST00000560467 PRRT4C9JH25 899 aa12.08□□□□□ -0.48
LDLR-212ENST00000560467 H0Y626 953 aa12.08□□□□□ -0.48
LDLR-212ENST00000560467 EEF2KO00418 725 aaKnown RBP12.08□□□□□ -0.48
LDLR-212ENST00000560467 APOL1O14791 398 aa12.08□□□□□ -0.48
LDLR-212ENST00000560467 CACNG3O60359 315 aa12.08□□□□□ -0.48
LDLR-212ENST00000560467 GJB3O75712 270 aa12.08□□□□□ -0.48
LDLR-212ENST00000560467 TRIM16O95361 564 aa12.08□□□□□ -0.48
LDLR-212ENST00000560467 TBX18O95935 607 aa12.08□□□□□ -0.48
LDLR-212ENST00000560467 MOCS2O96007 188 aaPredicted RBP12.08□□□□□ -0.48
LDLR-212ENST00000560467 IGLV3-25P01717 112 aa12.08□□□□□ -0.48
LDLR-212ENST00000560467 CAPNS1P04632 268 aa12.08□□□□□ -0.48
LDLR-212ENST00000560467 HMBSP08397 361 aa12.08□□□□□ -0.48
LDLR-212ENST00000560467 TFE3P19532 575 aaPredicted RBP12.08□□□□□ -0.48
LDLR-212ENST00000560467 IL1R2P27930 398 aa12.08□□□□□ -0.48
LDLR-212ENST00000560467 L1CAMP32004 1257 aa12.08□□□□□ -0.48
LDLR-212ENST00000560467 PTPN7P35236 360 aa12.08□□□□□ -0.48
LDLR-212ENST00000560467 MARCKSL1P49006 195 aa12.08□□□□□ -0.48
LDLR-212ENST00000560467 TPI1P60174 286 aa12.08□□□□□ -0.48
LDLR-212ENST00000560467 ZNF423Q2M1K9 1284 aa12.08□□□□□ -0.48
LDLR-212ENST00000560467 ATP13A4Q4VNC1 1196 aa12.08□□□□□ -0.48
LDLR-212ENST00000560467 RWDD4Q6NW29 188 aaKnown RBP12.08□□□□□ -0.48
LDLR-212ENST00000560467 MFSD7Q6UXD7 560 aa12.08□□□□□ -0.48
LDLR-212ENST00000560467 KIAA1324Q6UXG2 1013 aaKnown RBP12.08□□□□□ -0.48
LDLR-212ENST00000560467 TPGS1Q6ZTW0 290 aa12.08□□□□□ -0.48
LDLR-212ENST00000560467 MAATS1Q7Z4T9 603 aa12.08□□□□□ -0.48
LDLR-212ENST00000560467 CCDC185Q8N715 623 aa12.08□□□□□ -0.48
LDLR-212ENST00000560467 SPATA4Q8NEY3 305 aa12.08□□□□□ -0.48
LDLR-212ENST00000560467 GRK7Q8WTQ7 553 aa12.08□□□□□ -0.48
LDLR-212ENST00000560467 P3H4Q92791 437 aa12.08□□□□□ -0.48
LDLR-212ENST00000560467 BHMTQ93088 406 aa12.08□□□□□ -0.48
LDLR-212ENST00000560467 HAUS1Q96CS2 278 aa12.08□□□□□ -0.48
LDLR-212ENST00000560467 P2RY11Q96G91 374 aa12.08□□□□□ -0.48
LDLR-212ENST00000560467 C1orf74Q96LT6 269 aa12.08□□□□□ -0.48
LDLR-212ENST00000560467 GABRG3Q99928 467 aa12.08□□□□□ -0.48
LDLR-212ENST00000560467 BBS2Q9BXC9 721 aa12.08□□□□□ -0.48
LDLR-212ENST00000560467 PCDH18Q9HCL0 1135 aa12.08□□□□□ -0.48
LDLR-212ENST00000560467 DNAAF2Q9NVR5 837 aaKnown RBP12.08□□□□□ -0.48
LDLR-212ENST00000560467 ARHGEF38Q9NXL2 777 aa12.08□□□□□ -0.48
LDLR-212ENST00000560467 STARD13Q9Y3M8 1113 aa12.08□□□□□ -0.48
LDLR-212ENST00000560467 APC2O95996 2303 aa12.08□□□□□ -0.48
LDLR-212ENST00000560467 ITPR1Q14643 2758 aa12.07□□□□□ -0.48
LDLR-212ENST00000560467 PCDH15Q96QU1 1955 aa12.07□□□□□ -0.48
LDLR-212ENST00000560467 FAM221BA6H8Z2 402 aa12.07□□□□□ -0.48
LDLR-212ENST00000560467 EFCAB8A8MWE9 144 aa12.07□□□□□ -0.48
LDLR-212ENST00000560467 WASH3PC4AMC7 463 aa12.07□□□□□ -0.48
LDLR-212ENST00000560467 FGF10O15520 208 aaPredicted RBP12.07□□□□□ -0.48
LDLR-212ENST00000560467 ZBTB24O43167 697 aaPredicted RBP12.07□□□□□ -0.48
LDLR-212ENST00000560467 MSI1O43347 362 aaKnown RBP12.07□□□□□ -0.48
LDLR-212ENST00000560467 CST8O60676 142 aa12.07□□□□□ -0.48
LDLR-212ENST00000560467 ZNF217O75362 1048 aa12.07□□□□□ -0.48
LDLR-212ENST00000560467 PAGE1O75459 146 aa12.07□□□□□ -0.48
LDLR-212ENST00000560467 SYPP08247 313 aa12.07□□□□□ -0.48
LDLR-212ENST00000560467 FTH1P19P0C7X4 201 aa12.07□□□□□ -0.48
LDLR-212ENST00000560467 TYRP14679 529 aa12.07□□□□□ -0.48
LDLR-212ENST00000560467 TCF4P15884 667 aa12.07□□□□□ -0.48
LDLR-212ENST00000560467 MAOBP27338 520 aa12.07□□□□□ -0.48
LDLR-212ENST00000560467 CHRNA3P32297 505 aa12.07□□□□□ -0.48
LDLR-212ENST00000560467 SERPINB6P35237 376 aa12.07□□□□□ -0.48
LDLR-212ENST00000560467 CDKN2BP42772 138 aa12.07□□□□□ -0.48
LDLR-212ENST00000560467 NR2C2P49116 596 aa12.07□□□□□ -0.48
LDLR-212ENST00000560467 PITX1P78337 314 aaPredicted RBP12.07□□□□□ -0.48
LDLR-212ENST00000560467 GRIK2Q13002 908 aa12.07□□□□□ -0.48
LDLR-212ENST00000560467 DPYSL3Q14195 570 aa12.07□□□□□ -0.48
LDLR-212ENST00000560467 TRIP6Q15654 476 aaKnown RBP12.07□□□□□ -0.48
LDLR-212ENST00000560467 PLEKHG6Q3KR16 790 aa12.07□□□□□ -0.48
LDLR-212ENST00000560467 PREPLQ4J6C6 727 aaPredicted RBP12.07□□□□□ -0.48
LDLR-212ENST00000560467 ANKRD20A8PQ5CZ79 823 aa12.07□□□□□ -0.48
LDLR-212ENST00000560467 RABGAP1LQ5R372 815 aa12.07□□□□□ -0.48
LDLR-212ENST00000560467 C19orf48Q6RUI8 117 aa12.07□□□□□ -0.48
LDLR-212ENST00000560467 NUDT18Q6ZVK8 323 aa12.07□□□□□ -0.48
LDLR-212ENST00000560467 HTR3DQ70Z44 454 aa12.07□□□□□ -0.48
LDLR-212ENST00000560467 BNIPLQ7Z465 357 aa12.07□□□□□ -0.48
LDLR-212ENST00000560467 ADAT2Q7Z6V5 191 aaKnown RBP12.07□□□□□ -0.48
LDLR-212ENST00000560467 PROSER1Q86XN7 944 aa12.07□□□□□ -0.48
LDLR-212ENST00000560467 CPNE8Q86YQ8 564 aa12.07□□□□□ -0.48
LDLR-212ENST00000560467 RGL4Q8IZJ4 473 aa12.07□□□□□ -0.48
LDLR-212ENST00000560467 PNPLA1Q8N8W4 532 aa12.07□□□□□ -0.48
LDLR-212ENST00000560467 AZIN2Q96A70 460 aa12.07□□□□□ -0.48
LDLR-212ENST00000560467 MAGOHBQ96A72 148 aaKnown RBP12.07□□□□□ -0.48
LDLR-212ENST00000560467 FCRL2Q96LA5 508 aaPredicted RBP12.07□□□□□ -0.48
LDLR-212ENST00000560467 MRGPRX1Q96LB2 322 aa12.07□□□□□ -0.48
LDLR-212ENST00000560467 PEBP4Q96S96 227 aa12.07□□□□□ -0.48
LDLR-212ENST00000560467 KLF16Q9BXK1 252 aaPredicted RBP12.07□□□□□ -0.48
LDLR-212ENST00000560467 AP1M1Q9BXS5 423 aa12.07□□□□□ -0.48
LDLR-212ENST00000560467 RETREG1Q9H6L5 497 aa12.07□□□□□ -0.48
LDLR-212ENST00000560467 GPATCH2LQ9NWQ4 482 aa12.07□□□□□ -0.48
LDLR-212ENST00000560467 MARK1Q9P0L2 795 aa12.07□□□□□ -0.48
LDLR-212ENST00000560467 LAMA5O15230 3695 aa12.07□□□□□ -0.48
LDLR-212ENST00000560467 TNRC6BQ9UPQ9 1833 aaKnown RBP12.07□□□□□ -0.48
LDLR-212ENST00000560467 MYOFQ9NZM1 2061 aa12.06□□□□□ -0.48
LDLR-212ENST00000560467 hCG_1818297A0A087WSY0 165 aa12.06□□□□□ -0.48
LDLR-212ENST00000560467 F5H5T6 163 aa12.06□□□□□ -0.48
LDLR-212ENST00000560467 RIOK3O14730 519 aaKnown RBP12.06□□□□□ -0.48
LDLR-212ENST00000560467 FANCGO15287 622 aa12.06□□□□□ -0.48
LDLR-212ENST00000560467 NDUFS2O75306 463 aa12.06□□□□□ -0.48
LDLR-212ENST00000560467 LATS1O95835 1130 aa12.06□□□□□ -0.48
LDLR-212ENST00000560467 TUBBP07437 444 aa12.06□□□□□ -0.48
LDLR-212ENST00000560467 KRT10P13645 584 aa12.06□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms