RNA–Protein interactions for RNA: ENST00000559898.5

HDDC3-205, Transcript of HD domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene HDDC3, Length 1,024 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-205ENST00000559898 KRT3P12035 628 aa18.12■□□□□ 0.49
HDDC3-205ENST00000559898 PRLRP16471 622 aa18.12■□□□□ 0.49
HDDC3-205ENST00000559898 PTPN9P43378 593 aa18.12■□□□□ 0.49
HDDC3-205ENST00000559898 NSFP46459 744 aaKnown RBP18.12■□□□□ 0.49
HDDC3-205ENST00000559898 CCT8P50990 548 aa18.12■□□□□ 0.49
HDDC3-205ENST00000559898 C21orf59P57076 290 aa18.12■□□□□ 0.49
HDDC3-205ENST00000559898 MTA1Q13330 715 aa18.12■□□□□ 0.49
HDDC3-205ENST00000559898 C6orf118Q5T5N4 469 aa18.12■□□□□ 0.49
HDDC3-205ENST00000559898 RWDD4Q6NW29 188 aaKnown RBP18.12■□□□□ 0.49
HDDC3-205ENST00000559898 IRF2BP2Q7Z5L9 587 aa18.12■□□□□ 0.49
HDDC3-205ENST00000559898 GLRX5Q86SX6 157 aa18.12■□□□□ 0.49
HDDC3-205ENST00000559898 OR6K2Q8NGY2 324 aa18.12■□□□□ 0.49
HDDC3-205ENST00000559898 ADAMTS14Q8WXS8 1223 aa18.12■□□□□ 0.49
HDDC3-205ENST00000559898 NOL6Q9H6R4 1146 aaKnown RBP18.12■□□□□ 0.49
HDDC3-205ENST00000559898 PPARGC1AQ9UBK2 798 aaKnown RBP18.12■□□□□ 0.49
HDDC3-205ENST00000559898 ZFR2Q9UPR6 939 aaKnown RBP18.12■□□□□ 0.49
HDDC3-205ENST00000559898 C1QTNF3-AMACRE9PGA6 284 aa18.11■□□□□ 0.49
HDDC3-205ENST00000559898 TAF4O00268 1085 aa18.11■□□□□ 0.49
HDDC3-205ENST00000559898 ALOX15BO15296 676 aa18.11■□□□□ 0.49
HDDC3-205ENST00000559898 FLRT2O43155 660 aa18.11■□□□□ 0.49
HDDC3-205ENST00000559898 ATMINO43313 823 aaPredicted RBP18.11■□□□□ 0.49
HDDC3-205ENST00000559898 RNGTTO60942 597 aaKnown RBP18.11■□□□□ 0.49
HDDC3-205ENST00000559898 LEFTY1O75610 366 aa18.11■□□□□ 0.49
HDDC3-205ENST00000559898 CAPNS1P04632 268 aa18.11■□□□□ 0.49
HDDC3-205ENST00000559898 PLEKP08567 350 aaPredicted RBP18.11■□□□□ 0.49
HDDC3-205ENST00000559898 GPD1P21695 349 aa18.11■□□□□ 0.49
HDDC3-205ENST00000559898 SERPINH1P50454 418 aaKnown RBP18.11■□□□□ 0.49
HDDC3-205ENST00000559898 GSCP56915 257 aaPredicted RBP18.11■□□□□ 0.49
HDDC3-205ENST00000559898 NXPH1P58417 271 aa18.11■□□□□ 0.49
HDDC3-205ENST00000559898 CCDC157Q569K6 752 aa18.11■□□□□ 0.49
HDDC3-205ENST00000559898 PPP1R15BQ5SWA1 713 aa18.11■□□□□ 0.49
HDDC3-205ENST00000559898 CAVIN1Q6NZI2 390 aaKnown RBP18.11■□□□□ 0.49
HDDC3-205ENST00000559898 LRSAM1Q6UWE0 723 aa18.11■□□□□ 0.49
HDDC3-205ENST00000559898 KDM7AQ6ZMT4 941 aa18.11■□□□□ 0.49
HDDC3-205ENST00000559898 TRIM72Q6ZMU5 477 aa18.11■□□□□ 0.49
HDDC3-205ENST00000559898 STRADAQ7RTN6 431 aa18.11■□□□□ 0.49
HDDC3-205ENST00000559898 KDF1Q8NAX2 398 aaPredicted RBP18.11■□□□□ 0.49
HDDC3-205ENST00000559898 ARHGEF2Q92974 986 aaKnown RBP18.11■□□□□ 0.49
HDDC3-205ENST00000559898 NAP1L5Q96NT1 182 aaPredicted RBP18.11■□□□□ 0.49
HDDC3-205ENST00000559898 ELF4Q99607 663 aaPredicted RBP18.11■□□□□ 0.49
HDDC3-205ENST00000559898 SELENOOQ9BVL4 669 aa18.11■□□□□ 0.49
HDDC3-205ENST00000559898 TM6SF2Q9BZW4 377 aa18.11■□□□□ 0.49
HDDC3-205ENST00000559898 RTN4Q9NQC3 1192 aaKnown RBP18.11■□□□□ 0.49
HDDC3-205ENST00000559898 PAXBP1Q9Y5B6 917 aa18.11■□□□□ 0.49
HDDC3-205ENST00000559898 DMXL2Q8TDJ6 3036 aa18.1■□□□□ 0.49
HDDC3-205ENST00000559898 TDRD6O60522 2096 aaKnown RBP18.1■□□□□ 0.49
HDDC3-205ENST00000559898 FAM221BA6H8Z2 402 aa18.1■□□□□ 0.49
HDDC3-205ENST00000559898 TMCO5BA8MYB1 307 aa18.1■□□□□ 0.49
HDDC3-205ENST00000559898 GOLGA6L22H0YM25 854 aa18.1■□□□□ 0.49
HDDC3-205ENST00000559898 TLR4O00206 839 aa18.1■□□□□ 0.49
HDDC3-205ENST00000559898 PCDHGA12O60330 932 aa18.1■□□□□ 0.49
HDDC3-205ENST00000559898 DKK1O94907 266 aa18.1■□□□□ 0.49
HDDC3-205ENST00000559898 MBD3O95983 291 aa18.1■□□□□ 0.49
HDDC3-205ENST00000559898 SFSWAPQ12872 951 aaKnown RBP18.1■□□□□ 0.49
HDDC3-205ENST00000559898 HNRNPDQ14103 355 aaKnown RBP18.1■□□□□ 0.49
HDDC3-205ENST00000559898 FAM46CQ5VWP2 391 aa18.1■□□□□ 0.49
HDDC3-205ENST00000559898 SEL1L3Q68CR1 1132 aa18.1■□□□□ 0.49
HDDC3-205ENST00000559898 NAPEPLDQ6IQ20 393 aa18.1■□□□□ 0.49
HDDC3-205ENST00000559898 DSG4Q86SJ6 1040 aa18.1■□□□□ 0.49
HDDC3-205ENST00000559898 TRIM69Q86WT6 500 aa18.1■□□□□ 0.49
HDDC3-205ENST00000559898 C3orf20Q8ND61 904 aa18.1■□□□□ 0.49
HDDC3-205ENST00000559898 SAP25Q8TEE9 199 aa18.1■□□□□ 0.49
HDDC3-205ENST00000559898 MCEEQ96PE7 176 aa18.1■□□□□ 0.49
HDDC3-205ENST00000559898 PPP1R9BQ96SB3 815 aa18.1■□□□□ 0.49
HDDC3-205ENST00000559898 FUCA2Q9BTY2 467 aa18.1■□□□□ 0.49
HDDC3-205ENST00000559898 OSBPL2Q9H1P3 480 aa18.1■□□□□ 0.49
HDDC3-205ENST00000559898 GPATCH2LQ9NWQ4 482 aa18.1■□□□□ 0.49
HDDC3-205ENST00000559898 IL36AQ9UHA7 158 aa18.1■□□□□ 0.49
HDDC3-205ENST00000559898 A0A1W2PQU0 124 aa18.09■□□□□ 0.49
HDDC3-205ENST00000559898 FAM149AA5PLN7 773 aa18.09■□□□□ 0.49
HDDC3-205ENST00000559898 SIGLEC16A6NMB1 481 aa18.09■□□□□ 0.49
HDDC3-205ENST00000559898 SLC31A1O15431 190 aa18.09■□□□□ 0.49
HDDC3-205ENST00000559898 SLC7A4O43246 635 aa18.09■□□□□ 0.49
HDDC3-205ENST00000559898 RHOQP17081 205 aa18.09■□□□□ 0.49
HDDC3-205ENST00000559898 DNA2P51530 1060 aa18.09■□□□□ 0.49
HDDC3-205ENST00000559898 CCNHP51946 323 aaPredicted RBP18.09■□□□□ 0.49
HDDC3-205ENST00000559898 CLDN2P57739 230 aa18.09■□□□□ 0.49
HDDC3-205ENST00000559898 NRG1Q02297 640 aaPredicted RBP18.09■□□□□ 0.49
HDDC3-205ENST00000559898 DNAJC3Q13217 504 aa18.09■□□□□ 0.49
HDDC3-205ENST00000559898 FGL2Q14314 439 aa18.09■□□□□ 0.49
HDDC3-205ENST00000559898 SCYL2Q6P3W7 929 aa18.09■□□□□ 0.49
HDDC3-205ENST00000559898 KANSL1Q7Z3B3 1105 aa18.09■□□□□ 0.49
HDDC3-205ENST00000559898 PRPF39Q86UA1 669 aaKnown RBP18.09■□□□□ 0.49
HDDC3-205ENST00000559898 MCOLN2Q8IZK6 566 aa18.09■□□□□ 0.49
HDDC3-205ENST00000559898 TMIEQ8NEW7 156 aa18.09■□□□□ 0.49
HDDC3-205ENST00000559898 ANKRD20A12PQ8NF67 263 aa18.09■□□□□ 0.49
HDDC3-205ENST00000559898 TRIM7Q9C029 511 aa18.09■□□□□ 0.49
HDDC3-205ENST00000559898 TMEM248Q9NWD8 314 aa18.09■□□□□ 0.49
HDDC3-205ENST00000559898 GGT7Q9UJ14 662 aa18.09■□□□□ 0.49
HDDC3-205ENST00000559898 FREM2Q5SZK8 3169 aa18.09■□□□□ 0.49
HDDC3-205ENST00000559898 ARID1BQ8NFD5 2236 aaPredicted RBP18.08■□□□□ 0.49
HDDC3-205ENST00000559898 TRPM6Q9BX84 2022 aa18.08■□□□□ 0.49
HDDC3-205ENST00000559898 LRRC53A6NM62 1247 aa18.08■□□□□ 0.48
HDDC3-205ENST00000559898 SDC3O75056 442 aa18.08■□□□□ 0.48
HDDC3-205ENST00000559898 TRIM16O95361 564 aa18.08■□□□□ 0.48
HDDC3-205ENST00000559898 CALB1P05937 261 aa18.08■□□□□ 0.48
HDDC3-205ENST00000559898 ZNF284Q2VY69 593 aa18.08■□□□□ 0.48
HDDC3-205ENST00000559898 ATXN7L2Q5T6C5 722 aaPredicted RBP18.08■□□□□ 0.48
HDDC3-205ENST00000559898 ACAD10Q6JQN1 1059 aa18.08■□□□□ 0.48
HDDC3-205ENST00000559898 DNAJC24Q6P3W2 148 aa18.08■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms