RNA–Protein interactions for RNA: ENST00000557433.5

SHMT2-231, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 1,904 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-231ENST00000557433 PCBP1Q15365 356 aaKnown RBP eCLIP16.52■□□□□ 0.23
SHMT2-231ENST00000557433 DLG2Q15700 870 aa16.52■□□□□ 0.23
SHMT2-231ENST00000557433 PSMD5Q16401 504 aa16.52■□□□□ 0.23
SHMT2-231ENST00000557433 DCAF6Q58WW2 860 aa16.52■□□□□ 0.23
SHMT2-231ENST00000557433 NXNQ6DKJ4 435 aa16.52■□□□□ 0.23
SHMT2-231ENST00000557433 ERI1Q8IV48 349 aaKnown RBP16.52■□□□□ 0.23
SHMT2-231ENST00000557433 KLHDC8BQ8IXV7 354 aa16.52■□□□□ 0.23
SHMT2-231ENST00000557433 HM13Q8TCT9 377 aa16.52■□□□□ 0.23
SHMT2-231ENST00000557433 EME1Q96AY2 570 aa16.52■□□□□ 0.23
SHMT2-231ENST00000557433 FAM149B1Q96BN6 582 aa16.52■□□□□ 0.23
SHMT2-231ENST00000557433 SCYL1Q96KG9 808 aa16.52■□□□□ 0.23
SHMT2-231ENST00000557433 UHRF1Q96T88 793 aaPredicted RBP16.52■□□□□ 0.23
SHMT2-231ENST00000557433 DPEP3Q9H4B8 488 aa16.52■□□□□ 0.23
SHMT2-231ENST00000557433 GALNT8Q9NY28 637 aa16.52■□□□□ 0.23
SHMT2-231ENST00000557433 HSFX1Q9UBD0 423 aa16.52■□□□□ 0.23
SHMT2-231ENST00000557433 ACOT9Q9Y305 439 aa16.52■□□□□ 0.23
SHMT2-231ENST00000557433 AP4S1Q9Y587 144 aa16.52■□□□□ 0.23
SHMT2-231ENST00000557433 LGALS2P05162 132 aa16.51■□□□□ 0.23
SHMT2-231ENST00000557433 ATP6V1B1P15313 513 aa16.51■□□□□ 0.23
SHMT2-231ENST00000557433 USP46P62068 366 aa16.51■□□□□ 0.23
SHMT2-231ENST00000557433 RHDQ02161 417 aa16.51■□□□□ 0.23
SHMT2-231ENST00000557433 KCTD2Q14681 263 aa16.51■□□□□ 0.23
SHMT2-231ENST00000557433 PPP2R5DQ14738 602 aa16.51■□□□□ 0.23
SHMT2-231ENST00000557433 GRM3Q14832 879 aa16.51■□□□□ 0.23
SHMT2-231ENST00000557433 MGAT5BQ3V5L5 792 aa16.51■□□□□ 0.23
SHMT2-231ENST00000557433 FBXO47Q5MNV8 452 aa16.51■□□□□ 0.23
SHMT2-231ENST00000557433 C6orf52Q5T4I8 152 aa16.51■□□□□ 0.23
SHMT2-231ENST00000557433 OTUD1Q5VV17 481 aaPredicted RBP16.51■□□□□ 0.23
SHMT2-231ENST00000557433 LRRC8EQ6NSJ5 796 aa16.51■□□□□ 0.23
SHMT2-231ENST00000557433 IYDQ6PHW0 289 aa16.51■□□□□ 0.23
SHMT2-231ENST00000557433 CCDC117Q8IWD4 279 aaPredicted RBP16.51■□□□□ 0.23
SHMT2-231ENST00000557433 CNTN4Q8IWV2 1026 aa16.51■□□□□ 0.23
SHMT2-231ENST00000557433 FBXO16Q8IX29 292 aaPredicted RBP16.51■□□□□ 0.23
SHMT2-231ENST00000557433 TSPAN14Q8NG11 270 aa16.51■□□□□ 0.23
SHMT2-231ENST00000557433 AGR3Q8TD06 166 aa16.51■□□□□ 0.23
SHMT2-231ENST00000557433 MFSD3Q96ES6 412 aa16.51■□□□□ 0.23
SHMT2-231ENST00000557433 KLHL32Q96NJ5 620 aa16.51■□□□□ 0.23
SHMT2-231ENST00000557433 BIRC8Q96P09 236 aa16.51■□□□□ 0.23
SHMT2-231ENST00000557433 HNRNPABQ99729 332 aaKnown RBP16.51■□□□□ 0.23
SHMT2-231ENST00000557433 CEP41Q9BYV8 373 aa16.51■□□□□ 0.23
SHMT2-231ENST00000557433 IRAK4Q9NWZ3 460 aa16.51■□□□□ 0.23
SHMT2-231ENST00000557433 NCKIPSDQ9NZQ3 722 aa16.51■□□□□ 0.23
SHMT2-231ENST00000557433 RSL24D1Q9UHA3 163 aaKnown RBP16.51■□□□□ 0.23
SHMT2-231ENST00000557433 IPO11Q9UI26 975 aaKnown RBP16.51■□□□□ 0.23
SHMT2-231ENST00000557433 RUVBL2Q9Y230 463 aaKnown RBP16.51■□□□□ 0.23
SHMT2-231ENST00000557433 CEPT1Q9Y6K0 416 aa16.51■□□□□ 0.23
SHMT2-231ENST00000557433 ASB14A6NK59 587 aa16.51■□□□□ 0.23
SHMT2-231ENST00000557433 TK2O00142 265 aa16.51■□□□□ 0.23
SHMT2-231ENST00000557433 KCNK1O00180 336 aa16.51■□□□□ 0.23
SHMT2-231ENST00000557433 XPOTO43592 962 aaKnown RBP16.51■□□□□ 0.23
SHMT2-231ENST00000557433 H6PDO95479 791 aa16.51■□□□□ 0.23
SHMT2-231ENST00000557433 VTNP04004 478 aa16.51■□□□□ 0.23
SHMT2-231ENST00000557433 SBK3P0C264 359 aa16.51■□□□□ 0.23
SHMT2-231ENST00000557433 FAM163BP0C2L3 166 aa16.51■□□□□ 0.23
SHMT2-231ENST00000557433 CDH2P19022 906 aaPredicted RBP16.51■□□□□ 0.23
SHMT2-231ENST00000557433 GMPRP36959 345 aa16.51■□□□□ 0.23
SHMT2-231ENST00000557433 ALDH3B2P48448 385 aa16.51■□□□□ 0.23
SHMT2-231ENST00000557433 CDK9P50750 372 aaKnown RBP16.51■□□□□ 0.23
SHMT2-231ENST00000557433 PSME3P61289 254 aa16.51■□□□□ 0.23
SHMT2-231ENST00000557433 CDKL1Q00532 357 aa16.51■□□□□ 0.23
SHMT2-231ENST00000557433 CDC42EP1Q00587 391 aa16.51■□□□□ 0.23
SHMT2-231ENST00000557433 SQLEQ14534 574 aa16.51■□□□□ 0.23
SHMT2-231ENST00000557433 HACD2Q6Y1H2 254 aa16.51■□□□□ 0.23
SHMT2-231ENST00000557433 CHSY3Q70JA7 882 aa16.51■□□□□ 0.23
SHMT2-231ENST00000557433 LIMS2Q7Z4I7 341 aa16.51■□□□□ 0.23
SHMT2-231ENST00000557433 LSMEM2Q8N112 164 aa16.51■□□□□ 0.23
SHMT2-231ENST00000557433 NUP93Q8N1F7 819 aa16.51■□□□□ 0.23
SHMT2-231ENST00000557433 KDM1BQ8NB78 822 aa16.51■□□□□ 0.23
SHMT2-231ENST00000557433 DIS3LQ8TF46 1054 aaKnown RBP16.51■□□□□ 0.23
SHMT2-231ENST00000557433 CCDC126Q96EE4 140 aa16.51■□□□□ 0.23
SHMT2-231ENST00000557433 PPP1R2P1Q96PQ5 205 aa16.51■□□□□ 0.23
SHMT2-231ENST00000557433 DUSP16Q9BY84 665 aa16.51■□□□□ 0.23
SHMT2-231ENST00000557433 PNPLA3Q9NST1 481 aa16.51■□□□□ 0.23
SHMT2-231ENST00000557433 CAMSAP3Q9P1Y5 1249 aaPredicted RBP16.51■□□□□ 0.23
SHMT2-231ENST00000557433 TRIP11Q15643 1979 aa16.5■□□□□ 0.23
SHMT2-231ENST00000557433 EVPLQ92817 2033 aa16.5■□□□□ 0.23
SHMT2-231ENST00000557433 A0A087X1B8 175 aa16.5■□□□□ 0.23
SHMT2-231ENST00000557433 M0QYT0 321 aa16.5■□□□□ 0.23
SHMT2-231ENST00000557433 PPEF2O14830 753 aa16.5■□□□□ 0.23
SHMT2-231ENST00000557433 RNASEH2AO75792 299 aaKnown RBP16.5■□□□□ 0.23
SHMT2-231ENST00000557433 SLC35E2BP0CK96 405 aa16.5■□□□□ 0.23
SHMT2-231ENST00000557433 ERCC2P18074 760 aa16.5■□□□□ 0.23
SHMT2-231ENST00000557433 SLC7A1P30825 629 aa16.5■□□□□ 0.23
SHMT2-231ENST00000557433 ADRA1BP35368 520 aa16.5■□□□□ 0.23
SHMT2-231ENST00000557433 DPP6P42658 865 aa16.5■□□□□ 0.23
SHMT2-231ENST00000557433 TKTL1P51854 596 aa16.5■□□□□ 0.23
SHMT2-231ENST00000557433 GALNT2Q10471 571 aa16.5■□□□□ 0.23
SHMT2-231ENST00000557433 SEMA3BQ13214 749 aa16.5■□□□□ 0.23
SHMT2-231ENST00000557433 DALRD3Q5D0E6 543 aaKnown RBP16.5■□□□□ 0.23
SHMT2-231ENST00000557433 SLC27A1Q6PCB7 646 aa16.5■□□□□ 0.23
SHMT2-231ENST00000557433 ARMCX2Q7L311 632 aa16.5■□□□□ 0.23
SHMT2-231ENST00000557433 PIGZQ86VD9 579 aa16.5■□□□□ 0.23
SHMT2-231ENST00000557433 CARM1Q86X55 608 aa16.5■□□□□ 0.23
SHMT2-231ENST00000557433 CROCCP3Q8IVE0 287 aa16.5■□□□□ 0.23
SHMT2-231ENST00000557433 PELI3Q8N2H9 469 aa16.5■□□□□ 0.23
SHMT2-231ENST00000557433 FSTL5Q8N475 847 aaPredicted RBP16.5■□□□□ 0.23
SHMT2-231ENST00000557433 GALNT4Q8N4A0 578 aa16.5■□□□□ 0.23
SHMT2-231ENST00000557433 SLC2A14Q8TDB8 520 aa16.5■□□□□ 0.23
SHMT2-231ENST00000557433 PTCD2Q8WV60 388 aaKnown RBP16.5■□□□□ 0.23
SHMT2-231ENST00000557433 COPS5Q92905 334 aa16.5■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms