RNA–Protein interactions for RNA: ENST00000556689.5

SHMT2-223, Transcript of serine hydroxymethyltransferase 2, human

TSL 3

Gene SHMT2, Length 768 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHMT2-223	ENST00000556689	CSF2	P04141	144 aa		12.95	□□□□□ -0.34
SHMT2-223	ENST00000556689	IRAK1	P51617	712 aa		12.95	□□□□□ -0.34
SHMT2-223	ENST00000556689	RPS21	P63220	83 aa	Known RBP	12.95	□□□□□ -0.34
SHMT2-223	ENST00000556689	NME3	Q13232	169 aa		12.95	□□□□□ -0.34
SHMT2-223	ENST00000556689	PDCL	Q13371	301 aa		12.95	□□□□□ -0.34
SHMT2-223	ENST00000556689	MAPK8IP2	Q13387	824 aa	Predicted RBP	12.95	□□□□□ -0.34
SHMT2-223	ENST00000556689	CDKN3	Q16667	212 aa		12.95	□□□□□ -0.34
SHMT2-223	ENST00000556689	C5orf22	Q49AR2	442 aa		12.95	□□□□□ -0.34
SHMT2-223	ENST00000556689	TMEM259	Q4ZIN3	620 aa		12.95	□□□□□ -0.34
SHMT2-223	ENST00000556689	C3orf38	Q5JPI3	329 aa		12.95	□□□□□ -0.34
SHMT2-223	ENST00000556689	OR6B2	Q6IFH4	312 aa		12.95	□□□□□ -0.34
SHMT2-223	ENST00000556689	INO80C	Q6PI98	192 aa	Predicted RBP	12.95	□□□□□ -0.34
SHMT2-223	ENST00000556689	PTAR1	Q7Z6K3	402 aa	Predicted RBP	12.95	□□□□□ -0.34
SHMT2-223	ENST00000556689	C14orf80	Q86SX3	495 aa		12.95	□□□□□ -0.34
SHMT2-223	ENST00000556689	FMR1NB	Q8N0W7	255 aa	Predicted RBP	12.95	□□□□□ -0.34
SHMT2-223	ENST00000556689	CHST14	Q8NCH0	376 aa		12.95	□□□□□ -0.34
SHMT2-223	ENST00000556689	SPATA20	Q8TB22	786 aa		12.95	□□□□□ -0.34
SHMT2-223	ENST00000556689	SMARCE1	Q969G3	411 aa		12.95	□□□□□ -0.34
SHMT2-223	ENST00000556689	ATXN7L3B	Q96GX2	97 aa		12.95	□□□□□ -0.34
SHMT2-223	ENST00000556689	PPP1R16A	Q96I34	528 aa		12.95	□□□□□ -0.34
SHMT2-223	ENST00000556689	FEM1C	Q96JP0	617 aa		12.95	□□□□□ -0.34
SHMT2-223	ENST00000556689	SIK2	Q9H0K1	926 aa		12.95	□□□□□ -0.34
SHMT2-223	ENST00000556689	ASNSD1	Q9NWL6	643 aa		12.95	□□□□□ -0.34
SHMT2-223	ENST00000556689	IL36A	Q9UHA7	158 aa		12.95	□□□□□ -0.34
SHMT2-223	ENST00000556689	IPO11	Q9UI26	975 aa	Known RBP	12.95	□□□□□ -0.34
SHMT2-223	ENST00000556689	SALL4	Q9UJQ4	1053 aa		12.95	□□□□□ -0.34
SHMT2-223	ENST00000556689	PCDHGA8	Q9Y5G5	932 aa		12.95	□□□□□ -0.34
SHMT2-223	ENST00000556689	ENTPD2	Q9Y5L3	495 aa		12.95	□□□□□ -0.34
SHMT2-223	ENST00000556689	CFAP46	Q8IYW2	2715 aa		12.95	□□□□□ -0.34
SHMT2-223	ENST00000556689	SPTY2D1-AS1	A0A0U1RR47	76 aa		12.94	□□□□□ -0.34
SHMT2-223	ENST00000556689	POM121B	A6NF01	834 aa		12.94	□□□□□ -0.34
SHMT2-223	ENST00000556689	SNAP91	O60641	907 aa		12.94	□□□□□ -0.34
SHMT2-223	ENST00000556689	HSF2BP	O75031	334 aa		12.94	□□□□□ -0.34
SHMT2-223	ENST00000556689	PAGE1	O75459	146 aa		12.94	□□□□□ -0.34
SHMT2-223	ENST00000556689	GRAP2	O75791	330 aa		12.94	□□□□□ -0.34
SHMT2-223	ENST00000556689	CNTN5	O94779	1100 aa		12.94	□□□□□ -0.34
SHMT2-223	ENST00000556689	RHOC	P08134	193 aa		12.94	□□□□□ -0.34
SHMT2-223	ENST00000556689	RRM1	P23921	792 aa		12.94	□□□□□ -0.34
SHMT2-223	ENST00000556689	GNA15	P30679	374 aa		12.94	□□□□□ -0.34
SHMT2-223	ENST00000556689	RECQL	P46063	649 aa	Predicted RBP	12.94	□□□□□ -0.34
SHMT2-223	ENST00000556689	CLCN6	P51797	869 aa		12.94	□□□□□ -0.34
SHMT2-223	ENST00000556689	SKOR1	P84550	965 aa		12.94	□□□□□ -0.34
SHMT2-223	ENST00000556689	FZD2	Q14332	565 aa		12.94	□□□□□ -0.34
SHMT2-223	ENST00000556689	KIAA1161	Q6NSJ0	714 aa		12.94	□□□□□ -0.34
SHMT2-223	ENST00000556689	GUSBP11	Q6P575	273 aa		12.94	□□□□□ -0.34
SHMT2-223	ENST00000556689	KYAT3	Q6YP21	454 aa	Known RBP	12.94	□□□□□ -0.34
SHMT2-223	ENST00000556689	EFL1	Q7Z2Z2	1120 aa	Known RBP	12.94	□□□□□ -0.34
SHMT2-223	ENST00000556689	ARL14	Q8N4G2	192 aa		12.94	□□□□□ -0.34
SHMT2-223	ENST00000556689	ZNF548	Q8NEK5	533 aa	Predicted RBP	12.94	□□□□□ -0.34
SHMT2-223	ENST00000556689	PPP1R13B	Q96KQ4	1090 aa		12.94	□□□□□ -0.34
SHMT2-223	ENST00000556689	PSMB7	Q99436	277 aa		12.94	□□□□□ -0.34
SHMT2-223	ENST00000556689	HNRNPUL1	Q9BUJ2	856 aa	Known RBP eCLIP	12.94	□□□□□ -0.34
SHMT2-223	ENST00000556689	INTS2	Q9H0H0	1204 aa	Known RBP	12.94	□□□□□ -0.34
SHMT2-223	ENST00000556689	GDPD2	Q9HCC8	539 aa		12.94	□□□□□ -0.34
SHMT2-223	ENST00000556689	GPR27	Q9NS67	375 aa		12.94	□□□□□ -0.34
SHMT2-223	ENST00000556689	VPS51	Q9UID3	782 aa		12.94	□□□□□ -0.34
SHMT2-223	ENST00000556689	TENM4	Q6N022	2769 aa		12.93	□□□□□ -0.34
SHMT2-223	ENST00000556689		A0A1W2PNU3	283 aa	Predicted RBP	12.93	□□□□□ -0.34
SHMT2-223	ENST00000556689	EME2	A4GXA9	379 aa	Predicted RBP	12.93	□□□□□ -0.34
SHMT2-223	ENST00000556689	CYSRT1	A8MQ03	144 aa		12.93	□□□□□ -0.34
SHMT2-223	ENST00000556689	PYCARD-AS1	I3L0S3	204 aa		12.93	□□□□□ -0.34
SHMT2-223	ENST00000556689		M0QYT0	321 aa		12.93	□□□□□ -0.34
SHMT2-223	ENST00000556689	RNF103	O00237	685 aa		12.93	□□□□□ -0.34
SHMT2-223	ENST00000556689	TPP1	O14773	563 aa		12.93	□□□□□ -0.34
SHMT2-223	ENST00000556689	AQP9	O43315	295 aa		12.93	□□□□□ -0.34
SHMT2-223	ENST00000556689	SMAD6	O43541	496 aa	Known RBP	12.93	□□□□□ -0.34
SHMT2-223	ENST00000556689	SLC28A2	O43868	658 aa		12.93	□□□□□ -0.34
SHMT2-223	ENST00000556689	LEFTY1	O75610	366 aa		12.93	□□□□□ -0.34
SHMT2-223	ENST00000556689	WISP1	O95388	367 aa		12.93	□□□□□ -0.34
SHMT2-223	ENST00000556689	NME1	P15531	152 aa	Known RBP	12.93	□□□□□ -0.34
SHMT2-223	ENST00000556689	GGCX	P38435	758 aa		12.93	□□□□□ -0.34
SHMT2-223	ENST00000556689	PPP1R2	P41236	205 aa		12.93	□□□□□ -0.34
SHMT2-223	ENST00000556689	RABIF	P47224	123 aa		12.93	□□□□□ -0.34
SHMT2-223	ENST00000556689	NEK3	P51956	506 aa		12.93	□□□□□ -0.34
SHMT2-223	ENST00000556689	SGCG	Q13326	291 aa		12.93	□□□□□ -0.34
SHMT2-223	ENST00000556689	FGL2	Q14314	439 aa		12.93	□□□□□ -0.34
SHMT2-223	ENST00000556689	NR0B2	Q15466	257 aa		12.93	□□□□□ -0.34
SHMT2-223	ENST00000556689	KIAA1614	Q5VZ46	1190 aa		12.93	□□□□□ -0.34
SHMT2-223	ENST00000556689	ISM2	Q6H9L7	571 aa		12.93	□□□□□ -0.34
SHMT2-223	ENST00000556689	FOXR1	Q6PIV2	292 aa		12.93	□□□□□ -0.34
SHMT2-223	ENST00000556689	LINGO4	Q6UY18	593 aa		12.93	□□□□□ -0.34
SHMT2-223	ENST00000556689	CCDC81	Q6ZN84	652 aa		12.93	□□□□□ -0.34
SHMT2-223	ENST00000556689	RBM44	Q6ZP01	1051 aa	Known RBP	12.93	□□□□□ -0.34
SHMT2-223	ENST00000556689	DPY19L3	Q6ZPD9	716 aa		12.93	□□□□□ -0.34
SHMT2-223	ENST00000556689	C11orf57	Q6ZUT1	292 aa	Predicted RBP	12.93	□□□□□ -0.34
SHMT2-223	ENST00000556689	ENOSF1	Q7L5Y1	443 aa		12.93	□□□□□ -0.34
SHMT2-223	ENST00000556689	SETD3	Q86TU7	594 aa	Predicted RBP	12.93	□□□□□ -0.34
SHMT2-223	ENST00000556689	PARG	Q86W56	976 aa		12.93	□□□□□ -0.34
SHMT2-223	ENST00000556689	WDTC1	Q8N5D0	677 aa		12.93	□□□□□ -0.34
SHMT2-223	ENST00000556689	PRR11	Q96HE9	360 aa	Predicted RBP	12.93	□□□□□ -0.34
SHMT2-223	ENST00000556689	LENG8	Q96PV6	779 aa	Predicted RBP	12.93	□□□□□ -0.34
SHMT2-223	ENST00000556689	CPXM1	Q96SM3	734 aa		12.93	□□□□□ -0.34
SHMT2-223	ENST00000556689	TNKS2	Q9H2K2	1166 aa		12.93	□□□□□ -0.34
SHMT2-223	ENST00000556689	WDCP	Q9H6R7	721 aa		12.93	□□□□□ -0.34
SHMT2-223	ENST00000556689	ACP6	Q9NPH0	428 aa		12.93	□□□□□ -0.34
SHMT2-223	ENST00000556689	KLF15	Q9UIH9	416 aa		12.93	□□□□□ -0.34
SHMT2-223	ENST00000556689	HOOK1	Q9UJC3	728 aa	Known RBP	12.93	□□□□□ -0.34
SHMT2-223	ENST00000556689		A0A0D9SEW6	157 aa		12.92	□□□□□ -0.34
SHMT2-223	ENST00000556689	CDRT15L2	A8MXV6	281 aa		12.92	□□□□□ -0.34
SHMT2-223	ENST00000556689	FPGT	O14772	594 aa		12.92	□□□□□ -0.34

Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms