RNA–Protein interactions for RNA: ENST00000556412.4

VIPAS39-208, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 2 BASIC

Gene VIPAS39, Length 1,832 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-208ENST00000556412 ATP9BO43861 1147 aa14.29□□□□□ -0.12
VIPAS39-208ENST00000556412 RBP3P10745 1247 aa14.29□□□□□ -0.12
VIPAS39-208ENST00000556412 CHRM1P11229 460 aaPredicted RBP14.29□□□□□ -0.12
VIPAS39-208ENST00000556412 CCNCP24863 283 aa14.29□□□□□ -0.12
VIPAS39-208ENST00000556412 RECQLP46063 649 aaPredicted RBP14.29□□□□□ -0.12
VIPAS39-208ENST00000556412 PPIDQ08752 370 aaKnown RBP14.29□□□□□ -0.12
VIPAS39-208ENST00000556412 SLC10A7Q0GE19 358 aa14.29□□□□□ -0.12
VIPAS39-208ENST00000556412 SNX1Q13596 522 aa14.29□□□□□ -0.12
VIPAS39-208ENST00000556412 LBRQ14739 615 aaKnown RBP14.29□□□□□ -0.12
VIPAS39-208ENST00000556412 HNRNPA1L2Q32P51 320 aaKnown RBP14.29□□□□□ -0.12
VIPAS39-208ENST00000556412 HSF5Q4G112 596 aaPredicted RBP14.29□□□□□ -0.12
VIPAS39-208ENST00000556412 MARC1Q5VT66 337 aa14.29□□□□□ -0.12
VIPAS39-208ENST00000556412 DARS2Q6PI48 645 aaKnown RBP14.29□□□□□ -0.12
VIPAS39-208ENST00000556412 CACUL1Q86Y37 369 aa14.29□□□□□ -0.12
VIPAS39-208ENST00000556412 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP14.29□□□□□ -0.12
VIPAS39-208ENST00000556412 TMEM105Q8N8V8 129 aa14.29□□□□□ -0.12
VIPAS39-208ENST00000556412 KDM1BQ8NB78 822 aa14.29□□□□□ -0.12
VIPAS39-208ENST00000556412 MAIP1Q8WWC4 291 aa14.29□□□□□ -0.12
VIPAS39-208ENST00000556412 CEP41Q9BYV8 373 aa14.29□□□□□ -0.12
VIPAS39-208ENST00000556412 C2orf42Q9NWW7 574 aa14.29□□□□□ -0.12
VIPAS39-208ENST00000556412 EDDM13A0A1B0GTR0 161 aa14.29□□□□□ -0.12
VIPAS39-208ENST00000556412 CHURC1-FNTBB4DL54 471 aa14.29□□□□□ -0.12
VIPAS39-208ENST00000556412 MATN3O15232 486 aa14.29□□□□□ -0.12
VIPAS39-208ENST00000556412 MMP13P45452 471 aa14.29□□□□□ -0.12
VIPAS39-208ENST00000556412 CYTH1Q15438 398 aa14.29□□□□□ -0.12
VIPAS39-208ENST00000556412 INO80DQ53TQ3 878 aaPredicted RBP14.29□□□□□ -0.12
VIPAS39-208ENST00000556412 ATXN7L2Q5T6C5 722 aaPredicted RBP14.29□□□□□ -0.12
VIPAS39-208ENST00000556412 KIAA1211LQ6NV74 962 aa14.29□□□□□ -0.12
VIPAS39-208ENST00000556412 CDKL3Q8IVW4 592 aaPredicted RBP14.29□□□□□ -0.12
VIPAS39-208ENST00000556412 BBS5Q8N3I7 341 aa14.29□□□□□ -0.12
VIPAS39-208ENST00000556412 RASGEF1CQ8N431 466 aa14.29□□□□□ -0.12
VIPAS39-208ENST00000556412 SPEM1Q8N4L4 309 aa14.29□□□□□ -0.12
VIPAS39-208ENST00000556412 OR6K2Q8NGY2 324 aa14.29□□□□□ -0.12
VIPAS39-208ENST00000556412 FRS2Q8WU20 508 aa14.29□□□□□ -0.12
VIPAS39-208ENST00000556412 CASKIN2Q8WXE0 1202 aa14.29□□□□□ -0.12
VIPAS39-208ENST00000556412 ZNF599Q96NL3 588 aa14.29□□□□□ -0.12
VIPAS39-208ENST00000556412 TSGA13Q96PP4 275 aa14.29□□□□□ -0.12
VIPAS39-208ENST00000556412 QKIQ96PU8 341 aaKnown RBP eCLIP14.29□□□□□ -0.12
VIPAS39-208ENST00000556412 NAP1L3Q99457 506 aaPredicted RBP14.29□□□□□ -0.12
VIPAS39-208ENST00000556412 GABRG3Q99928 467 aa14.29□□□□□ -0.12
VIPAS39-208ENST00000556412 AP1M1Q9BXS5 423 aa14.29□□□□□ -0.12
VIPAS39-208ENST00000556412 BRD8Q9H0E9 1235 aa14.29□□□□□ -0.12
VIPAS39-208ENST00000556412 DLGAP2Q9P1A6 1054 aa14.29□□□□□ -0.12
VIPAS39-208ENST00000556412 SEPT3Q9UH03 358 aa14.29□□□□□ -0.12
VIPAS39-208ENST00000556412 SUN2Q9UH99 717 aa14.29□□□□□ -0.12
VIPAS39-208ENST00000556412 MUC3AQ02505 3323 aa14.28□□□□□ -0.12
VIPAS39-208ENST00000556412 TCRBV21S2A2A0A5A6 115 aa14.28□□□□□ -0.12
VIPAS39-208ENST00000556412 KIF2AO00139 706 aaPredicted RBP14.28□□□□□ -0.12
VIPAS39-208ENST00000556412 CES2O00748 559 aa14.28□□□□□ -0.12
VIPAS39-208ENST00000556412 SIN3BO75182 1162 aa14.28□□□□□ -0.12
VIPAS39-208ENST00000556412 PEX11BO96011 259 aa14.28□□□□□ -0.12
VIPAS39-208ENST00000556412 JCHAINP01591 159 aa14.28□□□□□ -0.12
VIPAS39-208ENST00000556412 CCNB1P14635 433 aa14.28□□□□□ -0.12
VIPAS39-208ENST00000556412 PRLRP16471 622 aa14.28□□□□□ -0.12
VIPAS39-208ENST00000556412 COL9A1P20849 921 aa14.28□□□□□ -0.12
VIPAS39-208ENST00000556412 RBL1P28749 1068 aa14.28□□□□□ -0.12
VIPAS39-208ENST00000556412 MAGEA9P43362 315 aa14.28□□□□□ -0.12
VIPAS39-208ENST00000556412 RENBPP51606 427 aa14.28□□□□□ -0.12
VIPAS39-208ENST00000556412 ITKQ08881 620 aa14.28□□□□□ -0.12
VIPAS39-208ENST00000556412 ENPP2Q13822 863 aa14.28□□□□□ -0.12
VIPAS39-208ENST00000556412 RFTN1Q14699 578 aaPredicted RBP14.28□□□□□ -0.12
VIPAS39-208ENST00000556412 PRKD1Q15139 912 aaPredicted RBP14.28□□□□□ -0.12
VIPAS39-208ENST00000556412 CRY1Q16526 586 aa14.28□□□□□ -0.12
VIPAS39-208ENST00000556412 SLC45A4Q5BKX6 768 aa14.28□□□□□ -0.12
VIPAS39-208ENST00000556412 HEATR6Q6AI08 1181 aaKnown RBP14.28□□□□□ -0.12
VIPAS39-208ENST00000556412 TMEM92Q6UXU6 159 aa14.28□□□□□ -0.12
VIPAS39-208ENST00000556412 SYT13Q7L8C5 426 aa14.28□□□□□ -0.12
VIPAS39-208ENST00000556412 BMP8AQ7Z5Y6 402 aa14.28□□□□□ -0.12
VIPAS39-208ENST00000556412 METTL3Q86U44 580 aaKnown RBP14.28□□□□□ -0.12
VIPAS39-208ENST00000556412 TSEN2Q8NCE0 465 aaKnown RBP14.28□□□□□ -0.12
VIPAS39-208ENST00000556412 CCDC114Q96M63 670 aa14.28□□□□□ -0.12
VIPAS39-208ENST00000556412 HHIPQ96QV1 700 aa14.28□□□□□ -0.12
VIPAS39-208ENST00000556412 CEP44Q9C0F1 390 aa14.28□□□□□ -0.12
VIPAS39-208ENST00000556412 NT5MQ9NPB1 228 aa14.28□□□□□ -0.12
VIPAS39-208ENST00000556412 C11orf16Q9NQ32 467 aa14.28□□□□□ -0.12
VIPAS39-208ENST00000556412 RBM22Q9NW64 420 aaKnown RBP eCLIP14.28□□□□□ -0.12
VIPAS39-208ENST00000556412 TTC28Q96AY4 2481 aa14.27□□□□□ -0.12
VIPAS39-208ENST00000556412 A0A1W2PQF6 199 aa14.27□□□□□ -0.12
VIPAS39-208ENST00000556412 HACD1B0YJ81 288 aa14.27□□□□□ -0.12
VIPAS39-208ENST00000556412 ZBTB24O43167 697 aaPredicted RBP14.27□□□□□ -0.12
VIPAS39-208ENST00000556412 MAXP61244 160 aa14.27□□□□□ -0.12
VIPAS39-208ENST00000556412 SATB1Q01826 763 aa14.27□□□□□ -0.12
VIPAS39-208ENST00000556412 ZBTB17Q13105 803 aa14.27□□□□□ -0.12
VIPAS39-208ENST00000556412 XRCC4Q13426 336 aa14.27□□□□□ -0.12
VIPAS39-208ENST00000556412 HNRNPDQ14103 355 aaKnown RBP14.27□□□□□ -0.12
VIPAS39-208ENST00000556412 STK40Q8N2I9 435 aa14.27□□□□□ -0.12
VIPAS39-208ENST00000556412 PCDH20Q8N6Y1 951 aaKnown RBP14.27□□□□□ -0.12
VIPAS39-208ENST00000556412 TSTD1Q8NFU3 115 aa14.27□□□□□ -0.12
VIPAS39-208ENST00000556412 ACTRT1Q8TDG2 376 aa14.27□□□□□ -0.12
VIPAS39-208ENST00000556412 HTR3CQ8WXA8 447 aa14.27□□□□□ -0.12
VIPAS39-208ENST00000556412 PTPRN2Q92932 1015 aa14.27□□□□□ -0.12
VIPAS39-208ENST00000556412 FERMT1Q9BQL6 677 aa14.27□□□□□ -0.12
VIPAS39-208ENST00000556412 POLMQ9NP87 494 aaPredicted RBP14.27□□□□□ -0.12
VIPAS39-208ENST00000556412 PRSS16Q9NQE7 514 aa14.27□□□□□ -0.12
VIPAS39-208ENST00000556412 DNPEPQ9ULA0 475 aa14.27□□□□□ -0.12
VIPAS39-208ENST00000556412 FARP1Q9Y4F1 1045 aaPredicted RBP14.27□□□□□ -0.12
VIPAS39-208ENST00000556412 BDP1A6H8Y1 2624 aa14.27□□□□□ -0.12
VIPAS39-208ENST00000556412 TRIOO75962 3097 aa14.27□□□□□ -0.13
VIPAS39-208ENST00000556412 MYOFQ9NZM1 2061 aa14.27□□□□□ -0.13
VIPAS39-208ENST00000556412 KIAA1549LQ6ZVL6 1849 aa14.27□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms