RNA–Protein interactions for RNA: ENST00000555557.5

SRP54-208, Transcript of signal recognition particle 54, humanhuman

TSL 2 BASIC

Gene SRP54, Length 1,949 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-208ENST00000555557 KCNJ11Q14654 390 aa10.39□□□□□ -0.75
SRP54-208ENST00000555557 MORF4L2Q15014 288 aa10.39□□□□□ -0.75
SRP54-208ENST00000555557 PLEKHG6Q3KR16 790 aa10.39□□□□□ -0.75
SRP54-208ENST00000555557 PCGF5Q86SE9 256 aa10.39□□□□□ -0.75
SRP54-208ENST00000555557 CCDC25Q86WR0 208 aa10.39□□□□□ -0.75
SRP54-208ENST00000555557 YAF2Q8IY57 180 aa10.39□□□□□ -0.75
SRP54-208ENST00000555557 PDCD7Q8N8D1 485 aaKnown RBP10.39□□□□□ -0.75
SRP54-208ENST00000555557 TSEN2Q8NCE0 465 aaKnown RBP10.39□□□□□ -0.75
SRP54-208ENST00000555557 BBOF1Q8ND07 529 aa10.39□□□□□ -0.75
SRP54-208ENST00000555557 NSMCE1Q8WV22 266 aa10.39□□□□□ -0.75
SRP54-208ENST00000555557 ELSPBP1Q96BH3 223 aa10.39□□□□□ -0.75
SRP54-208ENST00000555557 GBA3Q9H227 469 aa10.39□□□□□ -0.75
SRP54-208ENST00000555557 ECT2Q9H8V3 914 aa10.39□□□□□ -0.75
SRP54-208ENST00000555557 ARGLU1Q9NWB6 273 aaPredicted RBP10.39□□□□□ -0.75
SRP54-208ENST00000555557 MARK1Q9P0L2 795 aa10.39□□□□□ -0.75
SRP54-208ENST00000555557 IGSF9Q9P2J2 1179 aa10.39□□□□□ -0.75
SRP54-208ENST00000555557 UBA2Q9UBT2 640 aaPredicted RBP10.39□□□□□ -0.75
SRP54-208ENST00000555557 VPS51Q9UID3 782 aa10.39□□□□□ -0.75
SRP54-208ENST00000555557 NUMBLQ9Y6R0 609 aa10.39□□□□□ -0.75
SRP54-208ENST00000555557 MYO18AQ92614 2054 aaKnown RBP10.39□□□□□ -0.75
SRP54-208ENST00000555557 NUP210Q8TEM1 1887 aaPredicted RBP10.39□□□□□ -0.75
SRP54-208ENST00000555557 E7EVH7 732 aa10.39□□□□□ -0.75
SRP54-208ENST00000555557 K7ERQ8 282 aa10.39□□□□□ -0.75
SRP54-208ENST00000555557 MBTPS2O43462 519 aa10.39□□□□□ -0.75
SRP54-208ENST00000555557 AVILO75366 819 aa10.39□□□□□ -0.75
SRP54-208ENST00000555557 ERLIN1O75477 346 aa10.39□□□□□ -0.75
SRP54-208ENST00000555557 BANF1O75531 89 aa10.39□□□□□ -0.75
SRP54-208ENST00000555557 MT-CYBP00156 380 aaPredicted RBP10.39□□□□□ -0.75
SRP54-208ENST00000555557 ADH1CP00326 375 aa10.39□□□□□ -0.75
SRP54-208ENST00000555557 GDI1P31150 447 aa10.39□□□□□ -0.75
SRP54-208ENST00000555557 FDFT1P37268 417 aa10.39□□□□□ -0.75
SRP54-208ENST00000555557 CTSOP43234 321 aaPredicted RBP10.39□□□□□ -0.75
SRP54-208ENST00000555557 SLC6A11P48066 632 aa10.39□□□□□ -0.75
SRP54-208ENST00000555557 LMAN1P49257 510 aa10.39□□□□□ -0.75
SRP54-208ENST00000555557 MESP2Q0VG99 397 aa10.39□□□□□ -0.75
SRP54-208ENST00000555557 SEMA5AQ13591 1074 aa10.39□□□□□ -0.75
SRP54-208ENST00000555557 FUT11Q495W5 492 aa10.39□□□□□ -0.75
SRP54-208ENST00000555557 PITRM1Q5JRX3 1037 aa10.39□□□□□ -0.75
SRP54-208ENST00000555557 HP1BP3Q5SSJ5 553 aaPredicted RBP10.39□□□□□ -0.75
SRP54-208ENST00000555557 TMCO4Q5TGY1 634 aa10.39□□□□□ -0.75
SRP54-208ENST00000555557 NAIF1Q69YI7 327 aaPredicted RBP10.39□□□□□ -0.75
SRP54-208ENST00000555557 C4orf22Q6V702 233 aa10.39□□□□□ -0.75
SRP54-208ENST00000555557 RNF135Q8IUD6 432 aa10.39□□□□□ -0.75
SRP54-208ENST00000555557 TEX26Q8N6G2 289 aa10.39□□□□□ -0.75
SRP54-208ENST00000555557 EIF1ADQ8N9N8 165 aaKnown RBP10.39□□□□□ -0.75
SRP54-208ENST00000555557 HNRNPLLQ8WVV9 542 aaKnown RBP10.39□□□□□ -0.75
SRP54-208ENST00000555557 ATP2A3Q93084 1043 aa10.39□□□□□ -0.75
SRP54-208ENST00000555557 EXOC2Q96KP1 924 aa10.39□□□□□ -0.75
SRP54-208ENST00000555557 RPL10LQ96L21 214 aaKnown RBP10.39□□□□□ -0.75
SRP54-208ENST00000555557 MLPHQ9BV36 600 aaPredicted RBP10.39□□□□□ -0.75
SRP54-208ENST00000555557 GLOD4Q9HC38 313 aa10.39□□□□□ -0.75
SRP54-208ENST00000555557 PIH1D1Q9NWS0 290 aaKnown RBP10.39□□□□□ -0.75
SRP54-208ENST00000555557 GGA2Q9UJY4 613 aa10.39□□□□□ -0.75
SRP54-208ENST00000555557 C2CD4DB7Z1M9 353 aa10.38□□□□□ -0.75
SRP54-208ENST00000555557 CHADO15335 359 aa10.38□□□□□ -0.75
SRP54-208ENST00000555557 NFATC1O95644 943 aa10.38□□□□□ -0.75
SRP54-208ENST00000555557 PABPC1P11940 636 aaKnown RBP10.38□□□□□ -0.75
SRP54-208ENST00000555557 TNNT3P45378 269 aaPredicted RBP10.38□□□□□ -0.75
SRP54-208ENST00000555557 DSC2Q02487 901 aa10.38□□□□□ -0.75
SRP54-208ENST00000555557 CAV1Q03135 178 aa10.38□□□□□ -0.75
SRP54-208ENST00000555557 NIPAL4Q0D2K0 466 aa10.38□□□□□ -0.75
SRP54-208ENST00000555557 ZNF235Q14590 738 aa10.38□□□□□ -0.75
SRP54-208ENST00000555557 IHHQ14623 411 aa10.38□□□□□ -0.75
SRP54-208ENST00000555557 CYTH1Q15438 398 aa10.38□□□□□ -0.75
SRP54-208ENST00000555557 GEN1Q17RS7 908 aa10.38□□□□□ -0.75
SRP54-208ENST00000555557 GAB4Q2WGN9 574 aa10.38□□□□□ -0.75
SRP54-208ENST00000555557 FNBP1LQ5T0N5 605 aa10.38□□□□□ -0.75
SRP54-208ENST00000555557 TMEM215Q68D42 235 aa10.38□□□□□ -0.75
SRP54-208ENST00000555557 ITPRIPL1Q6GPH6 555 aa10.38□□□□□ -0.75
SRP54-208ENST00000555557 KDELC2Q7Z4H8 507 aa10.38□□□□□ -0.75
SRP54-208ENST00000555557 KIAA1958Q8N8K9 716 aa10.38□□□□□ -0.75
SRP54-208ENST00000555557 DCAF4L2Q8NA75 395 aa10.38□□□□□ -0.75
SRP54-208ENST00000555557 FATE1Q969F0 183 aa10.38□□□□□ -0.75
SRP54-208ENST00000555557 E2F7Q96AV8 911 aa10.38□□□□□ -0.75
SRP54-208ENST00000555557 OXNAD1Q96HP4 312 aaPredicted RBP10.38□□□□□ -0.75
SRP54-208ENST00000555557 RBM15Q96T37 977 aaKnown RBP eCLIP10.38□□□□□ -0.75
SRP54-208ENST00000555557 C2orf49Q9BVC5 232 aaPredicted RBP10.38□□□□□ -0.75
SRP54-208ENST00000555557 TRMT61BQ9BVS5 477 aaKnown RBP10.38□□□□□ -0.75
SRP54-208ENST00000555557 ARFGAP3Q9NP61 516 aa10.38□□□□□ -0.75
SRP54-208ENST00000555557 EPS15L1Q9UBC2 864 aa10.38□□□□□ -0.75
SRP54-208ENST00000555557 MTRF1LQ9UGC7 380 aaKnown RBP10.38□□□□□ -0.75
SRP54-208ENST00000555557 ATP8A1Q9Y2Q0 1164 aa10.38□□□□□ -0.75
SRP54-208ENST00000555557 FCF1Q9Y324 198 aaKnown RBP10.38□□□□□ -0.75
SRP54-208ENST00000555557 HOXC11O43248 304 aaPredicted RBP10.37□□□□□ -0.75
SRP54-208ENST00000555557 SMAD6O43541 496 aaKnown RBP10.37□□□□□ -0.75
SRP54-208ENST00000555557 CACNG3O60359 315 aa10.37□□□□□ -0.75
SRP54-208ENST00000555557 USP12O75317 370 aa10.37□□□□□ -0.75
SRP54-208ENST00000555557 TULP3O75386 442 aa10.37□□□□□ -0.75
SRP54-208ENST00000555557 ECI2O75521 394 aa10.37□□□□□ -0.75
SRP54-208ENST00000555557 ZNF189O75820 626 aaPredicted RBP10.37□□□□□ -0.75
SRP54-208ENST00000555557 CISD3P0C7P0 127 aa10.37□□□□□ -0.75
SRP54-208ENST00000555557 RGRP47804 291 aa10.37□□□□□ -0.75
SRP54-208ENST00000555557 STK19P49842 368 aaPredicted RBP10.37□□□□□ -0.75
SRP54-208ENST00000555557 DHX9Q08211 1270 aaKnown RBP10.37□□□□□ -0.75
SRP54-208ENST00000555557 SMAD4Q13485 552 aaKnown RBP10.37□□□□□ -0.75
SRP54-208ENST00000555557 RUNX3Q13761 415 aa10.37□□□□□ -0.75
SRP54-208ENST00000555557 PDGFRLQ15198 375 aa10.37□□□□□ -0.75
SRP54-208ENST00000555557 MAP9Q49MG5 647 aa10.37□□□□□ -0.75
SRP54-208ENST00000555557 MSS51Q4VC12 460 aa10.37□□□□□ -0.75
SRP54-208ENST00000555557 UBAP2Q5T6F2 1119 aaKnown RBP10.37□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms