RNA–Protein interactions for RNA: ENST00000554975.5

SHMT2-216, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 780 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-216ENST00000554975 HCRTO43612 131 aa11.42□□□□□ -0.58
SHMT2-216ENST00000554975 CBFA2T3O75081 653 aa11.42□□□□□ -0.58
SHMT2-216ENST00000554975 CPP00450 1065 aa11.42□□□□□ -0.58
SHMT2-216ENST00000554975 PDGFRBP09619 1106 aa11.42□□□□□ -0.58
SHMT2-216ENST00000554975 USP17L7P0C7H9 530 aa11.42□□□□□ -0.58
SHMT2-216ENST00000554975 CSH1P0DML2 217 aa11.42□□□□□ -0.58
SHMT2-216ENST00000554975 CSH2P0DML3 217 aa11.42□□□□□ -0.58
SHMT2-216ENST00000554975 PLA2G2AP14555 144 aa11.42□□□□□ -0.58
SHMT2-216ENST00000554975 IVDP26440 423 aa11.42□□□□□ -0.58
SHMT2-216ENST00000554975 PHBP35232 272 aa11.42□□□□□ -0.58
SHMT2-216ENST00000554975 HOXD12P35452 270 aa11.42□□□□□ -0.58
SHMT2-216ENST00000554975 CDKN2BP42772 138 aa11.42□□□□□ -0.58
SHMT2-216ENST00000554975 KIR2DL1P43626 348 aaPredicted RBP11.42□□□□□ -0.58
SHMT2-216ENST00000554975 MRPS21P82921 87 aaKnown RBP11.42□□□□□ -0.58
SHMT2-216ENST00000554975 RPL6Q02878 288 aaKnown RBP11.42□□□□□ -0.58
SHMT2-216ENST00000554975 ZNF33AQ06730 810 aa11.42□□□□□ -0.58
SHMT2-216ENST00000554975 SLC20A2Q08357 652 aa11.42□□□□□ -0.58
SHMT2-216ENST00000554975 C19orf57Q0VDD7 668 aa11.42□□□□□ -0.58
SHMT2-216ENST00000554975 HNRNPDQ14103 355 aaKnown RBP11.42□□□□□ -0.58
SHMT2-216ENST00000554975 HIBCHQ6NVY1 386 aaPredicted RBP11.42□□□□□ -0.58
SHMT2-216ENST00000554975 MFSD7Q6UXD7 560 aa11.42□□□□□ -0.58
SHMT2-216ENST00000554975 DPH6Q7L8W6 267 aa11.42□□□□□ -0.58
SHMT2-216ENST00000554975 UNC93AQ86WB7 457 aa11.42□□□□□ -0.58
SHMT2-216ENST00000554975 TDRPQ86YL5 185 aa11.42□□□□□ -0.58
SHMT2-216ENST00000554975 ZDHHC17Q8IUH5 632 aa11.42□□□□□ -0.58
SHMT2-216ENST00000554975 SCN4BQ8IWT1 228 aa11.42□□□□□ -0.58
SHMT2-216ENST00000554975 OR6B3Q8NGW1 331 aa11.42□□□□□ -0.58
SHMT2-216ENST00000554975 CEP76Q8TAP6 659 aa11.42□□□□□ -0.58
SHMT2-216ENST00000554975 SPATA18Q8TC71 538 aa11.42□□□□□ -0.58
SHMT2-216ENST00000554975 SYT15Q9BQS2 421 aa11.42□□□□□ -0.58
SHMT2-216ENST00000554975 CD93Q9NPY3 652 aa11.42□□□□□ -0.58
SHMT2-216ENST00000554975 PPANQ9NQ55 473 aaKnown RBP11.42□□□□□ -0.58
SHMT2-216ENST00000554975 CYLDQ9NQC7 956 aa11.42□□□□□ -0.58
SHMT2-216ENST00000554975 METTL5Q9NRN9 209 aaKnown RBP11.42□□□□□ -0.58
SHMT2-216ENST00000554975 SAMD15Q9P1V8 674 aa11.42□□□□□ -0.58
SHMT2-216ENST00000554975 HESX1Q9UBX0 185 aa11.42□□□□□ -0.58
SHMT2-216ENST00000554975 FETUBQ9UGM5 382 aa11.42□□□□□ -0.58
SHMT2-216ENST00000554975 MGAQ8IWI9 3026 aa11.42□□□□□ -0.58
SHMT2-216ENST00000554975 COL6A6A6NMZ7 2263 aa11.42□□□□□ -0.58
SHMT2-216ENST00000554975 NUMA1Q14980 2115 aa11.41□□□□□ -0.58
SHMT2-216ENST00000554975 TRAV19A0A0A6YYK7 116 aa11.41□□□□□ -0.58
SHMT2-216ENST00000554975 TLDC2A0PJX2 215 aa11.41□□□□□ -0.58
SHMT2-216ENST00000554975 FAM170AA1A519 330 aa11.41□□□□□ -0.58
SHMT2-216ENST00000554975 GOLGA8SH3BPF8 625 aa11.41□□□□□ -0.58
SHMT2-216ENST00000554975 APOC4-APOC2K7ER74 178 aa11.41□□□□□ -0.58
SHMT2-216ENST00000554975 O00370 1275 aa11.41□□□□□ -0.58
SHMT2-216ENST00000554975 ATP2C2O75185 946 aa11.41□□□□□ -0.58
SHMT2-216ENST00000554975 NFATC1O95644 943 aa11.41□□□□□ -0.58
SHMT2-216ENST00000554975 CALCAP01258 141 aa11.41□□□□□ -0.58
SHMT2-216ENST00000554975 APOC2P02655 101 aa11.41□□□□□ -0.58
SHMT2-216ENST00000554975 GPD1P21695 349 aa11.41□□□□□ -0.58
SHMT2-216ENST00000554975 WARSP23381 471 aaKnown RBP11.41□□□□□ -0.58
SHMT2-216ENST00000554975 CYP2F1P24903 491 aa11.41□□□□□ -0.58
SHMT2-216ENST00000554975 LMO2P25791 158 aa11.41□□□□□ -0.58
SHMT2-216ENST00000554975 GNL1P36915 607 aaPredicted RBP11.41□□□□□ -0.58
SHMT2-216ENST00000554975 RPL7AP62424 266 aaKnown RBP11.41□□□□□ -0.58
SHMT2-216ENST00000554975 RPL10AP62906 217 aaKnown RBP11.41□□□□□ -0.58
SHMT2-216ENST00000554975 SLC25A11Q02978 314 aaKnown RBP11.41□□□□□ -0.58
SHMT2-216ENST00000554975 KDSRQ06136 332 aa11.41□□□□□ -0.58
SHMT2-216ENST00000554975 CYP4F3Q08477 520 aa11.41□□□□□ -0.58
SHMT2-216ENST00000554975 AUHQ13825 339 aaKnown RBP11.41□□□□□ -0.58
SHMT2-216ENST00000554975 OASLQ15646 514 aaKnown RBP11.41□□□□□ -0.58
SHMT2-216ENST00000554975 TAZQ16635 292 aa11.41□□□□□ -0.58
SHMT2-216ENST00000554975 P3H1Q32P28 736 aa11.41□□□□□ -0.58
SHMT2-216ENST00000554975 ZNF394Q53GI3 561 aa11.41□□□□□ -0.58
SHMT2-216ENST00000554975 DENND1BQ6P3S1 775 aa11.41□□□□□ -0.58
SHMT2-216ENST00000554975 LCLAT1Q6UWP7 414 aa11.41□□□□□ -0.58
SHMT2-216ENST00000554975 C4orf50Q6ZRC1 276 aa11.41□□□□□ -0.58
SHMT2-216ENST00000554975 ARHGEF18Q6ZSZ5 1173 aa11.41□□□□□ -0.58
SHMT2-216ENST00000554975 CCDC121Q6ZUS5 278 aa11.41□□□□□ -0.58
SHMT2-216ENST00000554975 CPLX4Q7Z7G2 160 aa11.41□□□□□ -0.58
SHMT2-216ENST00000554975 XYLT1Q86Y38 959 aa11.41□□□□□ -0.58
SHMT2-216ENST00000554975 MAP7D3Q8IWC1 876 aa11.41□□□□□ -0.58
SHMT2-216ENST00000554975 PGBD3Q8N328 593 aa11.41□□□□□ -0.58
SHMT2-216ENST00000554975 OTUD6BQ8N6M0 293 aa11.41□□□□□ -0.58
SHMT2-216ENST00000554975 SLC4A11Q8NBS3 891 aa11.41□□□□□ -0.58
SHMT2-216ENST00000554975 SLC35B2Q8TB61 432 aa11.41□□□□□ -0.58
SHMT2-216ENST00000554975 EPS8L3Q8TE67 593 aaKnown RBP11.41□□□□□ -0.58
SHMT2-216ENST00000554975 KBTBD7Q8WVZ9 684 aa11.41□□□□□ -0.58
SHMT2-216ENST00000554975 TEKT4Q8WW24 435 aa11.41□□□□□ -0.58
SHMT2-216ENST00000554975 DYDC1Q8WWB3 177 aa11.41□□□□□ -0.58
SHMT2-216ENST00000554975 TFAP2BQ92481 460 aa11.41□□□□□ -0.58
SHMT2-216ENST00000554975 ELMO3Q96BJ8 720 aa11.41□□□□□ -0.58
SHMT2-216ENST00000554975 ZBTB9Q96C00 473 aa11.41□□□□□ -0.58
SHMT2-216ENST00000554975 ERLEC1Q96DZ1 483 aa11.41□□□□□ -0.58
SHMT2-216ENST00000554975 MRPL45Q9BRJ2 306 aaKnown RBP11.41□□□□□ -0.58
SHMT2-216ENST00000554975 CNPY3Q9BT09 278 aa11.41□□□□□ -0.58
SHMT2-216ENST00000554975 HEMGNQ9BXL5 484 aa11.41□□□□□ -0.58
SHMT2-216ENST00000554975 SMYD3Q9H7B4 428 aa11.41□□□□□ -0.58
SHMT2-216ENST00000554975 POLMQ9NP87 494 aaPredicted RBP11.41□□□□□ -0.58
SHMT2-216ENST00000554975 TOR4AQ9NXH8 423 aa11.41□□□□□ -0.58
SHMT2-216ENST00000554975 NKIRAS1Q9NYS0 192 aa11.41□□□□□ -0.58
SHMT2-216ENST00000554975 NINJ2Q9NZG7 142 aa11.41□□□□□ -0.58
SHMT2-216ENST00000554975 DKK4Q9UBT3 224 aa11.41□□□□□ -0.58
SHMT2-216ENST00000554975 HCN2Q9UL51 889 aa11.41□□□□□ -0.58
SHMT2-216ENST00000554975 CDH9Q9ULB4 789 aa11.41□□□□□ -0.58
SHMT2-216ENST00000554975 TPX2Q9ULW0 747 aaKnown RBP11.41□□□□□ -0.58
SHMT2-216ENST00000554975 R3HDM2Q9Y2K5 976 aaKnown RBP11.41□□□□□ -0.58
SHMT2-216ENST00000554975 PCDHB9Q9Y5E1 797 aa11.41□□□□□ -0.58
SHMT2-216ENST00000554975 ATMQ13315 3056 aa11.4□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms