RNA–Protein interactions for RNA: ENST00000554467.5

SHMT2-212, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 3,416 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-212ENST00000554467 LRRC39Q96DD0 335 aa11.89□□□□□ -0.51
SHMT2-212ENST00000554467 SRPK1Q96SB4 655 aaKnown RBP11.89□□□□□ -0.51
SHMT2-212ENST00000554467 NDNQ99608 321 aa11.89□□□□□ -0.51
SHMT2-212ENST00000554467 ELAC1Q9H777 363 aaKnown RBP11.89□□□□□ -0.51
SHMT2-212ENST00000554467 TMEM165Q9HC07 324 aa11.89□□□□□ -0.51
SHMT2-212ENST00000554467 FETUBQ9UGM5 382 aa11.89□□□□□ -0.51
SHMT2-212ENST00000554467 ZNF232Q9UNY5 417 aa11.89□□□□□ -0.51
SHMT2-212ENST00000554467 J3KR12 359 aa11.89□□□□□ -0.51
SHMT2-212ENST00000554467 COPEO14579 308 aa11.89□□□□□ -0.51
SHMT2-212ENST00000554467 MAFKO60675 156 aa11.89□□□□□ -0.51
SHMT2-212ENST00000554467 RFPL1O75677 317 aa11.89□□□□□ -0.51
SHMT2-212ENST00000554467 KRT37O76014 449 aa11.89□□□□□ -0.51
SHMT2-212ENST00000554467 CBX6O95503 412 aa11.89□□□□□ -0.51
SHMT2-212ENST00000554467 HAPLN1P10915 354 aaPredicted RBP11.89□□□□□ -0.51
SHMT2-212ENST00000554467 TSHRP16473 764 aa11.89□□□□□ -0.51
SHMT2-212ENST00000554467 SKIV2L2P42285 1042 aaKnown RBP11.89□□□□□ -0.51
SHMT2-212ENST00000554467 GPR17Q13304 367 aa11.89□□□□□ -0.51
SHMT2-212ENST00000554467 MS4A13Q5J8X5 152 aa11.89□□□□□ -0.51
SHMT2-212ENST00000554467 MANEALQ5VSG8 457 aa11.89□□□□□ -0.51
SHMT2-212ENST00000554467 RASSF3Q86WH2 238 aa11.89□□□□□ -0.51
SHMT2-212ENST00000554467 PNPLA1Q8N8W4 532 aa11.89□□□□□ -0.51
SHMT2-212ENST00000554467 LRMDAQ9H2I8 198 aa11.89□□□□□ -0.51
SHMT2-212ENST00000554467 PPCSQ9HAB8 311 aa11.89□□□□□ -0.51
SHMT2-212ENST00000554467 MOCS1Q9NZB8 636 aa11.89□□□□□ -0.51
SHMT2-212ENST00000554467 A0A0G2JND7 137 aa11.89□□□□□ -0.51
SHMT2-212ENST00000554467 OR6C75A6NL08 312 aa11.89□□□□□ -0.51
SHMT2-212ENST00000554467 PDLIM1O00151 329 aa11.89□□□□□ -0.51
SHMT2-212ENST00000554467 NCAM2O15394 837 aa11.89□□□□□ -0.51
SHMT2-212ENST00000554467 GJB3O75712 270 aa11.89□□□□□ -0.51
SHMT2-212ENST00000554467 PGAM1P18669 254 aa11.89□□□□□ -0.51
SHMT2-212ENST00000554467 BGNP21810 368 aa11.89□□□□□ -0.51
SHMT2-212ENST00000554467 GSTT1P30711 240 aa11.89□□□□□ -0.51
SHMT2-212ENST00000554467 MLLT6P55198 1093 aaPredicted RBP11.89□□□□□ -0.51
SHMT2-212ENST00000554467 SESN3P58005 492 aa11.89□□□□□ -0.51
SHMT2-212ENST00000554467 RASA2Q15283 850 aa11.89□□□□□ -0.51
SHMT2-212ENST00000554467 KIAA1841Q6NSI8 718 aa11.89□□□□□ -0.51
SHMT2-212ENST00000554467 C16orf46Q6P387 395 aa11.89□□□□□ -0.51
SHMT2-212ENST00000554467 RFWD3Q6PCD5 774 aa11.89□□□□□ -0.51
SHMT2-212ENST00000554467 SH2D5Q6ZV89 423 aa11.89□□□□□ -0.51
SHMT2-212ENST00000554467 NDUFAF2Q8N183 169 aa11.89□□□□□ -0.51
SHMT2-212ENST00000554467 PABPC5Q96DU9 382 aaKnown RBP11.89□□□□□ -0.51
SHMT2-212ENST00000554467 TRIM62Q9BVG3 475 aa11.89□□□□□ -0.51
SHMT2-212ENST00000554467 NOL6Q9H6R4 1146 aaKnown RBP11.89□□□□□ -0.51
SHMT2-212ENST00000554467 MTPAPQ9NVV4 582 aaKnown RBP eCLIP11.89□□□□□ -0.51
SHMT2-212ENST00000554467 RBM22Q9NW64 420 aaKnown RBP eCLIP11.89□□□□□ -0.518e-10■■■■■ 40.7
SHMT2-212ENST00000554467 TLR6Q9Y2C9 796 aa11.89□□□□□ -0.51
SHMT2-212ENST00000554467 PRRC2BQ5JSZ5 2229 aaKnown RBP11.88□□□□□ -0.51
SHMT2-212ENST00000554467 HLA-DQB2P05538 268 aa11.88□□□□□ -0.51
SHMT2-212ENST00000554467 PAX3P23760 479 aa11.88□□□□□ -0.51
SHMT2-212ENST00000554467 ETFBP38117 255 aa11.88□□□□□ -0.51
SHMT2-212ENST00000554467 CHRNA4P43681 627 aa11.88□□□□□ -0.51
SHMT2-212ENST00000554467 MNX1P50219 401 aaPredicted RBP11.88□□□□□ -0.51
SHMT2-212ENST00000554467 POU6F1Q14863 301 aa11.88□□□□□ -0.51
SHMT2-212ENST00000554467 PDK4Q16654 411 aa11.88□□□□□ -0.51
SHMT2-212ENST00000554467 KHDC1Q4VXA5 237 aaKnown RBP11.88□□□□□ -0.51
SHMT2-212ENST00000554467 HSP90AA5PQ58FG0 334 aa11.88□□□□□ -0.51
SHMT2-212ENST00000554467 PPM1JQ5JR12 505 aa11.88□□□□□ -0.51
SHMT2-212ENST00000554467 HMCESQ96FZ2 354 aa11.88□□□□□ -0.51
SHMT2-212ENST00000554467 APOPT1Q96IL0 206 aa11.88□□□□□ -0.51
SHMT2-212ENST00000554467 TRAPPC9Q96Q05 1148 aa11.88□□□□□ -0.51
SHMT2-212ENST00000554467 LRRC37BQ96QE4 947 aa11.88□□□□□ -0.51
SHMT2-212ENST00000554467 TBC1D10AQ9BXI6 508 aa11.88□□□□□ -0.51
SHMT2-212ENST00000554467 IQCGQ9H095 443 aaKnown RBP11.88□□□□□ -0.51
SHMT2-212ENST00000554467 CATSPERBQ9H7T0 1116 aa11.88□□□□□ -0.51
SHMT2-212ENST00000554467 ZNF395Q9H8N7 513 aaPredicted RBP11.88□□□□□ -0.51
SHMT2-212ENST00000554467 OGDHLQ9ULD0 1010 aa11.88□□□□□ -0.51
SHMT2-212ENST00000554467 TLR5O60602 858 aa11.88□□□□□ -0.51
SHMT2-212ENST00000554467 ZWINTO95229 277 aa11.88□□□□□ -0.51
SHMT2-212ENST00000554467 CDK16Q00536 496 aa11.88□□□□□ -0.51
SHMT2-212ENST00000554467 ITKQ08881 620 aa11.88□□□□□ -0.51
SHMT2-212ENST00000554467 RNF43Q68DV7 783 aa11.88□□□□□ -0.51
SHMT2-212ENST00000554467 IRGCQ6NXR0 463 aa11.88□□□□□ -0.51
SHMT2-212ENST00000554467 FBXL22Q6P050 247 aa11.88□□□□□ -0.51
SHMT2-212ENST00000554467 GATA6Q92908 595 aa11.88□□□□□ -0.51
SHMT2-212ENST00000554467 SLC39A13Q96H72 371 aa11.88□□□□□ -0.51
SHMT2-212ENST00000554467 DDX50Q9BQ39 737 aaKnown RBP11.88□□□□□ -0.51
SHMT2-212ENST00000554467 PRDM5Q9NQX1 630 aaPredicted RBP11.88□□□□□ -0.51
SHMT2-212ENST00000554467 NUMBLQ9Y6R0 609 aa11.88□□□□□ -0.51
SHMT2-212ENST00000554467 NYNRINQ9P2P1 1898 aaKnown RBP11.88□□□□□ -0.51
SHMT2-212ENST00000554467 POLBP06746 335 aa11.88□□□□□ -0.51
SHMT2-212ENST00000554467 ITGB8P26012 769 aa11.88□□□□□ -0.51
SHMT2-212ENST00000554467 NMBRP28336 390 aa11.88□□□□□ -0.51
SHMT2-212ENST00000554467 TPP2P29144 1249 aaPredicted RBP11.88□□□□□ -0.51
SHMT2-212ENST00000554467 KCTD11Q693B1 232 aa11.88□□□□□ -0.51
SHMT2-212ENST00000554467 CMC1Q7Z7K0 106 aa11.88□□□□□ -0.51
SHMT2-212ENST00000554467 LRRC43Q8N309 656 aa11.88□□□□□ -0.51
SHMT2-212ENST00000554467 RTL3Q8N8U3 475 aaKnown RBP11.88□□□□□ -0.51
SHMT2-212ENST00000554467 DPF3Q92784 378 aa11.88□□□□□ -0.51
SHMT2-212ENST00000554467 VWCEQ96DN2 955 aa11.88□□□□□ -0.51
SHMT2-212ENST00000554467 ZNF512Q96ME7 567 aaPredicted RBP11.88□□□□□ -0.51
SHMT2-212ENST00000554467 RPRD1AQ96P16 312 aaPredicted RBP11.88□□□□□ -0.51
SHMT2-212ENST00000554467 RAB3IPQ96QF0 476 aaPredicted RBP11.88□□□□□ -0.51
SHMT2-212ENST00000554467 BEGAINQ9BUH8 593 aa11.88□□□□□ -0.51
SHMT2-212ENST00000554467 FICDQ9BVA6 458 aa11.88□□□□□ -0.51
SHMT2-212ENST00000554467 NACA2Q9H009 215 aa11.88□□□□□ -0.51
SHMT2-212ENST00000554467 BRD8Q9H0E9 1235 aa11.88□□□□□ -0.51
SHMT2-212ENST00000554467 MMADHCQ9H3L0 296 aaPredicted RBP11.88□□□□□ -0.51
SHMT2-212ENST00000554467 PRDM16Q9HAZ2 1276 aa11.88□□□□□ -0.51
SHMT2-212ENST00000554467 EIF2B3Q9NR50 452 aaKnown RBP11.88□□□□□ -0.51
SHMT2-212ENST00000554467 BFARQ9NZS9 450 aa11.88□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms