RNA–Protein interactions for RNA: ENST00000554165.1

CCDC88C-208, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 420 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-208ENST00000554165 DUOXA1Q1HG43 343 aa11.82□□□□□ -0.52
CCDC88C-208ENST00000554165 ATP13A4Q4VNC1 1196 aa11.82□□□□□ -0.52
CCDC88C-208ENST00000554165 PPP6R3Q5H9R7 873 aaPredicted RBP11.82□□□□□ -0.52
CCDC88C-208ENST00000554165 SYCP2LQ5T4T6 812 aa11.82□□□□□ -0.52
CCDC88C-208ENST00000554165 ATXN7L2Q5T6C5 722 aaPredicted RBP11.82□□□□□ -0.52
CCDC88C-208ENST00000554165 SLC23A3Q6PIS1 610 aa11.82□□□□□ -0.52
CCDC88C-208ENST00000554165 USP30Q70CQ3 517 aa11.82□□□□□ -0.52
CCDC88C-208ENST00000554165 NPWQ8N729 165 aa11.82□□□□□ -0.52
CCDC88C-208ENST00000554165 OR14C36Q8NHC7 312 aa11.82□□□□□ -0.52
CCDC88C-208ENST00000554165 GRIN3AQ8TCU5 1115 aa11.82□□□□□ -0.52
CCDC88C-208ENST00000554165 VOPP1Q96AW1 172 aa11.82□□□□□ -0.52
CCDC88C-208ENST00000554165 ORAI3Q9BRQ5 295 aa11.82□□□□□ -0.52
CCDC88C-208ENST00000554165 GTPBP2Q9BX10 602 aaKnown RBP11.82□□□□□ -0.52
CCDC88C-208ENST00000554165 TM6SF2Q9BZW4 377 aa11.82□□□□□ -0.52
CCDC88C-208ENST00000554165 MAGEH1Q9H213 219 aa11.82□□□□□ -0.52
CCDC88C-208ENST00000554165 SGK2Q9HBY8 427 aa11.82□□□□□ -0.52
CCDC88C-208ENST00000554165 MRPL47Q9HD33 250 aaKnown RBP11.82□□□□□ -0.52
CCDC88C-208ENST00000554165 CWC15Q9P013 229 aaKnown RBP11.82□□□□□ -0.52
CCDC88C-208ENST00000554165 EVLQ9UI08 416 aaPredicted RBP11.82□□□□□ -0.52
CCDC88C-208ENST00000554165 NCKAP1Q9Y2A7 1128 aa11.82□□□□□ -0.52
CCDC88C-208ENST00000554165 CABIN1Q9Y6J0 2220 aa11.81□□□□□ -0.52
CCDC88C-208ENST00000554165 WASH4PA8MWX3 477 aa11.81□□□□□ -0.52
CCDC88C-208ENST00000554165 AKR1B15C9JRZ8 316 aaPredicted RBP11.81□□□□□ -0.52
CCDC88C-208ENST00000554165 EEF2KO00418 725 aaKnown RBP11.81□□□□□ -0.52
CCDC88C-208ENST00000554165 TM4SF5O14894 197 aa11.81□□□□□ -0.52
CCDC88C-208ENST00000554165 BUB1O43683 1085 aa11.81□□□□□ -0.52
CCDC88C-208ENST00000554165 KDELR3O43731 214 aa11.81□□□□□ -0.52
CCDC88C-208ENST00000554165 RARAP10276 462 aa11.81□□□□□ -0.52
CCDC88C-208ENST00000554165 PCK1P35558 622 aa11.81□□□□□ -0.52
CCDC88C-208ENST00000554165 CSNK1EP49674 416 aaKnown RBP11.81□□□□□ -0.52
CCDC88C-208ENST00000554165 ZNF75DP51815 510 aa11.81□□□□□ -0.52
CCDC88C-208ENST00000554165 ADPRHP54922 357 aa11.81□□□□□ -0.52
CCDC88C-208ENST00000554165 AIF1P55008 147 aa11.81□□□□□ -0.52
CCDC88C-208ENST00000554165 TAS2R38P59533 333 aa11.81□□□□□ -0.52
CCDC88C-208ENST00000554165 PPP2CBP62714 309 aa11.81□□□□□ -0.52
CCDC88C-208ENST00000554165 PPP2CAP67775 309 aa11.81□□□□□ -0.52
CCDC88C-208ENST00000554165 UAP1L1Q3KQV9 507 aa11.81□□□□□ -0.52
CCDC88C-208ENST00000554165 ARSIQ5FYB1 569 aa11.81□□□□□ -0.52
CCDC88C-208ENST00000554165 WDR45BQ5MNZ6 344 aa11.81□□□□□ -0.52
CCDC88C-208ENST00000554165 KIAA0895LQ68EN5 471 aa11.81□□□□□ -0.52
CCDC88C-208ENST00000554165 RETSATQ6NUM9 610 aa11.81□□□□□ -0.52
CCDC88C-208ENST00000554165 ARHGAP36Q6ZRI8 547 aa11.81□□□□□ -0.52
CCDC88C-208ENST00000554165 RFX8Q6ZV50 586 aa11.81□□□□□ -0.52
CCDC88C-208ENST00000554165 ZNF354CQ86Y25 554 aa11.81□□□□□ -0.52
CCDC88C-208ENST00000554165 UMODL1-AS1Q8N2C9 162 aa11.81□□□□□ -0.52
CCDC88C-208ENST00000554165 TC2NQ8N9U0 490 aa11.81□□□□□ -0.52
CCDC88C-208ENST00000554165 HSPH1Q92598 858 aa11.81□□□□□ -0.52
CCDC88C-208ENST00000554165 NUSAP1Q9BXS6 441 aaKnown RBP11.81□□□□□ -0.52
CCDC88C-208ENST00000554165 LRRC19Q9H756 370 aa11.81□□□□□ -0.52
CCDC88C-208ENST00000554165 NHEJ1Q9H9Q4 299 aaPredicted RBP11.81□□□□□ -0.52
CCDC88C-208ENST00000554165 OSGEPQ9NPF4 335 aa11.81□□□□□ -0.52
CCDC88C-208ENST00000554165 ETNK2Q9NVF9 386 aa11.81□□□□□ -0.52
CCDC88C-208ENST00000554165 SLC6A14Q9UN76 642 aa11.81□□□□□ -0.52
CCDC88C-208ENST00000554165 WASF2Q9Y6W5 498 aa11.81□□□□□ -0.52
CCDC88C-208ENST00000554165 PCDH15Q96QU1 1955 aa11.81□□□□□ -0.52
CCDC88C-208ENST00000554165 A0A1B0GVT2 93 aa11.8□□□□□ -0.52
CCDC88C-208ENST00000554165 SSU72P8A0A1W2PR75 194 aa11.8□□□□□ -0.52
CCDC88C-208ENST00000554165 MED19A0JLT2 244 aaPredicted RBP11.8□□□□□ -0.52
CCDC88C-208ENST00000554165 TMEM110-MUSTN1A8MSY1 372 aa11.8□□□□□ -0.52
CCDC88C-208ENST00000554165 C10orf142B7Z368 130 aa11.8□□□□□ -0.52
CCDC88C-208ENST00000554165 J3KR12 359 aa11.8□□□□□ -0.52
CCDC88C-208ENST00000554165 KPNA3O00505 521 aaPredicted RBP11.8□□□□□ -0.52
CCDC88C-208ENST00000554165 KCNK3O14649 394 aa11.8□□□□□ -0.52
CCDC88C-208ENST00000554165 BCAT2O15382 392 aaPredicted RBP11.8□□□□□ -0.52
CCDC88C-208ENST00000554165 AKR1B10O60218 316 aa11.8□□□□□ -0.52
CCDC88C-208ENST00000554165 LEFTY1O75610 366 aa11.8□□□□□ -0.52
CCDC88C-208ENST00000554165 H2AFZP0C0S5 128 aa11.8□□□□□ -0.52
CCDC88C-208ENST00000554165 DESP17661 470 aa11.8□□□□□ -0.52
CCDC88C-208ENST00000554165 ERCC2P18074 760 aa11.8□□□□□ -0.52
CCDC88C-208ENST00000554165 AMPD1P23109 780 aa11.8□□□□□ -0.52
CCDC88C-208ENST00000554165 MAT2AP31153 395 aaKnown RBP11.8□□□□□ -0.52
CCDC88C-208ENST00000554165 HOXD12P35452 270 aa11.8□□□□□ -0.52
CCDC88C-208ENST00000554165 GJC1P36383 396 aa11.8□□□□□ -0.52
CCDC88C-208ENST00000554165 SSR1P43307 286 aaKnown RBP11.8□□□□□ -0.52
CCDC88C-208ENST00000554165 PAPOLAP51003 745 aaKnown RBP11.8□□□□□ -0.52
CCDC88C-208ENST00000554165 CLCN6P51797 869 aa11.8□□□□□ -0.52
CCDC88C-208ENST00000554165 CCNHP51946 323 aaPredicted RBP11.8□□□□□ -0.52
CCDC88C-208ENST00000554165 SLC25A11Q02978 314 aaKnown RBP11.8□□□□□ -0.52
CCDC88C-208ENST00000554165 SLC20A2Q08357 652 aa11.8□□□□□ -0.52
CCDC88C-208ENST00000554165 MMRN1Q13201 1228 aa11.8□□□□□ -0.52
CCDC88C-208ENST00000554165 SERINC3Q13530 473 aa11.8□□□□□ -0.52
CCDC88C-208ENST00000554165 DPYSQ14117 519 aa11.8□□□□□ -0.52
CCDC88C-208ENST00000554165 PIGHQ14442 188 aaPredicted RBP11.8□□□□□ -0.52
CCDC88C-208ENST00000554165 CARD16Q5EG05 197 aa11.8□□□□□ -0.52
CCDC88C-208ENST00000554165 AGBL4Q5VU57 503 aa11.8□□□□□ -0.52
CCDC88C-208ENST00000554165 H2AFVQ71UI9 128 aa11.8□□□□□ -0.52
CCDC88C-208ENST00000554165 DGLUCYQ7Z3D6 616 aa11.8□□□□□ -0.52
CCDC88C-208ENST00000554165 DSG4Q86SJ6 1040 aa11.8□□□□□ -0.52
CCDC88C-208ENST00000554165 ARHGAP12Q8IWW6 846 aa11.8□□□□□ -0.52
CCDC88C-208ENST00000554165 NIPA2Q8N8Q9 360 aa11.8□□□□□ -0.52
CCDC88C-208ENST00000554165 ZNF564Q8TBZ8 553 aaPredicted RBP11.8□□□□□ -0.52
CCDC88C-208ENST00000554165 SLC39A8Q9C0K1 460 aa11.8□□□□□ -0.52
CCDC88C-208ENST00000554165 DEF6Q9H4E7 631 aa11.8□□□□□ -0.52
CCDC88C-208ENST00000554165 CATSPERBQ9H7T0 1116 aa11.8□□□□□ -0.52
CCDC88C-208ENST00000554165 IL21RQ9HBE5 538 aa11.8□□□□□ -0.52
CCDC88C-208ENST00000554165 TM9SF3Q9HD45 589 aa11.8□□□□□ -0.52
CCDC88C-208ENST00000554165 STAU2Q9NUL3 570 aaKnown RBP eCLIP11.8□□□□□ -0.52
CCDC88C-208ENST00000554165 ZNHIT6Q9NWK9 470 aaKnown RBP11.8□□□□□ -0.52
CCDC88C-208ENST00000554165 CTTNBP2NLQ9P2B4 639 aa11.8□□□□□ -0.52
CCDC88C-208ENST00000554165 IP6K2Q9UHH9 426 aa11.8□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms