RNA–Protein interactions for RNA: ENST00000553569.1

TDP1-206, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 3

Gene TDP1, Length 879 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-206ENST00000553569 TP53INP2Q8IXH6 220 aa23.25■■□□□ 1.31
TDP1-206ENST00000553569 CHST14Q8NCH0 376 aa23.25■■□□□ 1.31
TDP1-206ENST00000553569 FAM71BQ8TC56 605 aa23.25■■□□□ 1.31
TDP1-206ENST00000553569 LOXL4Q96JB6 756 aa23.25■■□□□ 1.31
TDP1-206ENST00000553569 GPR174Q9BXC1 333 aa23.25■■□□□ 1.31
TDP1-206ENST00000553569 ARRDC1-AS1Q9H2J1 176 aa23.25■■□□□ 1.31
TDP1-206ENST00000553569 FBXL12Q9NXK8 326 aa23.25■■□□□ 1.31
TDP1-206ENST00000553569 WSB2Q9NYS7 404 aaPredicted RBP23.25■■□□□ 1.31
TDP1-206ENST00000553569 SERGEFQ9UGK8 458 aa23.25■■□□□ 1.31
TDP1-206ENST00000553569 SALL4Q9UJQ4 1053 aa23.25■■□□□ 1.31
TDP1-206ENST00000553569 DMDP11532 3685 aa23.25■■□□□ 1.31
TDP1-206ENST00000553569 ZFHX2Q9C0A1 2572 aaPredicted RBP23.25■■□□□ 1.31
TDP1-206ENST00000553569 OTOGLQ3ZCN5 2332 aa23.25■■□□□ 1.31
TDP1-206ENST00000553569 RALGAPA1Q6GYQ0 2036 aa23.25■■□□□ 1.31
TDP1-206ENST00000553569 NUMA1Q14980 2115 aa23.24■■□□□ 1.31
TDP1-206ENST00000553569 TNRC6BQ9UPQ9 1833 aaKnown RBP23.24■■□□□ 1.31
TDP1-206ENST00000553569 C1QTNF3-AMACRE9PGA6 284 aa23.24■■□□□ 1.31
TDP1-206ENST00000553569 J3KR12 359 aa23.24■■□□□ 1.31
TDP1-206ENST00000553569 MCF2LO15068 1137 aa23.24■■□□□ 1.31
TDP1-206ENST00000553569 ALOX15BO15296 676 aa23.24■■□□□ 1.31
TDP1-206ENST00000553569 ZNF821O75541 412 aaPredicted RBP23.24■■□□□ 1.31
TDP1-206ENST00000553569 RNASEH2AO75792 299 aaKnown RBP23.24■■□□□ 1.31
TDP1-206ENST00000553569 KRT1P04264 644 aa23.24■■□□□ 1.31
TDP1-206ENST00000553569 C7P10643 843 aa23.24■■□□□ 1.31
TDP1-206ENST00000553569 IL4RP24394 825 aa23.24■■□□□ 1.31
TDP1-206ENST00000553569 PTGER3P43115 390 aa23.24■■□□□ 1.31
TDP1-206ENST00000553569 METAP1P53582 386 aa23.24■■□□□ 1.31
TDP1-206ENST00000553569 NAP1L1P55209 391 aaKnown RBP23.24■■□□□ 1.31
TDP1-206ENST00000553569 CREB5Q02930 508 aa23.24■■□□□ 1.31
TDP1-206ENST00000553569 PDK2Q15119 407 aa23.24■■□□□ 1.31
TDP1-206ENST00000553569 CCDC6Q16204 474 aa23.24■■□□□ 1.31
TDP1-206ENST00000553569 DPY19L3Q6ZPD9 716 aa23.24■■□□□ 1.31
TDP1-206ENST00000553569 ARHGAP36Q6ZRI8 547 aa23.24■■□□□ 1.31
TDP1-206ENST00000553569 MAP7D3Q8IWC1 876 aa23.24■■□□□ 1.31
TDP1-206ENST00000553569 RYBPQ8N488 228 aaPredicted RBP23.24■■□□□ 1.31
TDP1-206ENST00000553569 LZTR1Q8N653 840 aa23.24■■□□□ 1.31
TDP1-206ENST00000553569 PIP4K2CQ8TBX8 421 aa23.24■■□□□ 1.31
TDP1-206ENST00000553569 GRIN3AQ8TCU5 1115 aa23.24■■□□□ 1.31
TDP1-206ENST00000553569 RAPGEF5Q92565 580 aa23.24■■□□□ 1.31
TDP1-206ENST00000553569 OMDQ99983 421 aa23.24■■□□□ 1.31
TDP1-206ENST00000553569 ZNF670Q9BS34 389 aa23.24■■□□□ 1.31
TDP1-206ENST00000553569 LACRTQ9GZZ8 138 aa23.24■■□□□ 1.31
TDP1-206ENST00000553569 SP110Q9HB58 689 aa23.24■■□□□ 1.31
TDP1-206ENST00000553569 UBA2Q9UBT2 640 aaPredicted RBP23.24■■□□□ 1.31
TDP1-206ENST00000553569 SARDHQ9UL12 918 aa23.24■■□□□ 1.31
TDP1-206ENST00000553569 SCML1Q9UN30 329 aa23.24■■□□□ 1.31
TDP1-206ENST00000553569 NCKAP1Q9Y2A7 1128 aa23.24■■□□□ 1.31
TDP1-206ENST00000553569 DUSP10Q9Y6W6 482 aa23.24■■□□□ 1.31
TDP1-206ENST00000553569 USP34Q70CQ2 3546 aa23.23■■□□□ 1.31
TDP1-206ENST00000553569 CXorf51AA0A1B0GTR3 108 aa23.23■■□□□ 1.31
TDP1-206ENST00000553569 LRRD1A4D1F6 860 aa23.23■■□□□ 1.31
TDP1-206ENST00000553569 CTSLP07711 333 aa23.23■■□□□ 1.31
TDP1-206ENST00000553569 C5AR1P21730 350 aa23.23■■□□□ 1.31
TDP1-206ENST00000553569 CHRNA3P32297 505 aa23.23■■□□□ 1.31
TDP1-206ENST00000553569 ACSL1P33121 698 aa23.23■■□□□ 1.31
TDP1-206ENST00000553569 SPEM2Q0P670 501 aa23.23■■□□□ 1.31
TDP1-206ENST00000553569 ANKRD20A8PQ5CZ79 823 aa23.23■■□□□ 1.31
TDP1-206ENST00000553569 LYSMD4Q5XG99 296 aa23.23■■□□□ 1.31
TDP1-206ENST00000553569 CYP2U1Q7Z449 544 aa23.23■■□□□ 1.31
TDP1-206ENST00000553569 RHOT1Q8IXI2 618 aa23.23■■□□□ 1.31
TDP1-206ENST00000553569 HDDC3Q8N4P3 179 aa23.23■■□□□ 1.31
TDP1-206ENST00000553569 AADATQ8N5Z0 425 aa23.23■■□□□ 1.31
TDP1-206ENST00000553569 HSPA12BQ96MM6 686 aa23.23■■□□□ 1.31
TDP1-206ENST00000553569 BTBD1Q9H0C5 482 aa23.23■■□□□ 1.31
TDP1-206ENST00000553569 PPM1HQ9ULR3 514 aa23.23■■□□□ 1.31
TDP1-206ENST00000553569 ATXN2Q99700 1313 aaKnown RBP23.23■■□□□ 1.31
TDP1-206ENST00000553569 PLK4O00444 970 aa23.22■■□□□ 1.31
TDP1-206ENST00000553569 PRAMEF11O60813 436 aa23.22■■□□□ 1.31
TDP1-206ENST00000553569 KDELR1P24390 212 aa23.22■■□□□ 1.31
TDP1-206ENST00000553569 HOXD11P31277 338 aaPredicted RBP23.22■■□□□ 1.31
TDP1-206ENST00000553569 SERPINB6P35237 376 aa23.22■■□□□ 1.31
TDP1-206ENST00000553569 MPLP40238 635 aa23.22■■□□□ 1.31
TDP1-206ENST00000553569 CCNHP51946 323 aaPredicted RBP23.22■■□□□ 1.31
TDP1-206ENST00000553569 SFSWAPQ12872 951 aaKnown RBP23.22■■□□□ 1.31
TDP1-206ENST00000553569 ODF2Q5BJF6 829 aa23.22■■□□□ 1.31
TDP1-206ENST00000553569 CARD16Q5EG05 197 aa23.22■■□□□ 1.31
TDP1-206ENST00000553569 ATXN7L2Q5T6C5 722 aaPredicted RBP23.22■■□□□ 1.31
TDP1-206ENST00000553569 FAM46CQ5VWP2 391 aa23.22■■□□□ 1.31
TDP1-206ENST00000553569 C11orf63Q6NUN7 778 aa23.22■■□□□ 1.31
TDP1-206ENST00000553569 USP30Q70CQ3 517 aa23.22■■□□□ 1.31
TDP1-206ENST00000553569 SLC41A1Q8IVJ1 513 aa23.22■■□□□ 1.31
TDP1-206ENST00000553569 OR6K2Q8NGY2 324 aa23.22■■□□□ 1.31
TDP1-206ENST00000553569 TPCN2Q8NHX9 752 aa23.22■■□□□ 1.31
TDP1-206ENST00000553569 PCDH19Q8TAB3 1148 aa23.22■■□□□ 1.31
TDP1-206ENST00000553569 ISG20Q96AZ6 181 aaKnown RBP23.22■■□□□ 1.31
TDP1-206ENST00000553569 ZDHHC6Q9H6R6 413 aa23.22■■□□□ 1.31
TDP1-206ENST00000553569 PDFQ9HBH1 243 aa23.22■■□□□ 1.31
TDP1-206ENST00000553569 IL36AQ9UHA7 158 aa23.22■■□□□ 1.31
TDP1-206ENST00000553569 ALG6Q9Y672 507 aa23.22■■□□□ 1.31
TDP1-206ENST00000553569 MEI4A8MW99 385 aa23.21■■□□□ 1.31
TDP1-206ENST00000553569 KPNA3O00505 521 aaPredicted RBP23.21■■□□□ 1.31
TDP1-206ENST00000553569 MFSD11O43934 449 aa23.21■■□□□ 1.31
TDP1-206ENST00000553569 SEMA4FO95754 770 aa23.21■■□□□ 1.31
TDP1-206ENST00000553569 RHOAP61586 193 aa23.21■■□□□ 1.31
TDP1-206ENST00000553569 ZNF33AQ06730 810 aa23.21■■□□□ 1.31
TDP1-206ENST00000553569 ARSIQ5FYB1 569 aa23.21■■□□□ 1.31
TDP1-206ENST00000553569 LRRC38Q5VT99 294 aa23.21■■□□□ 1.31
TDP1-206ENST00000553569 DAAM2Q86T65 1068 aa23.21■■□□□ 1.31
TDP1-206ENST00000553569 CASKIN2Q8WXE0 1202 aa23.21■■□□□ 1.31
TDP1-206ENST00000553569 PIGKQ92643 395 aa23.21■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms