RNA–Protein interactions for RNA: ENST00000552823.5

LIMA1-215, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 3,254 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-215ENST00000552823 IL1RL2Q9HB29 575 aa5.68□□□□□ -1.5
LIMA1-215ENST00000552823 HS3ST4Q9Y661 456 aa5.68□□□□□ -1.5
LIMA1-215ENST00000552823 CDY1Q9Y6F8 540 aa5.68□□□□□ -1.5
LIMA1-215ENST00000552823 ZNF638Q14966 1978 aaKnown RBP5.68□□□□□ -1.5
LIMA1-215ENST00000552823 LOC102724159A0A0B4J2E5 919 aa5.68□□□□□ -1.5
LIMA1-215ENST00000552823 E9PAM4 449 aa5.68□□□□□ -1.5
LIMA1-215ENST00000552823 NDC80O14777 642 aa5.68□□□□□ -1.5
LIMA1-215ENST00000552823 SPAG6O75602 509 aa5.68□□□□□ -1.5
LIMA1-215ENST00000552823 FBXO21O94952 628 aa5.68□□□□□ -1.5
LIMA1-215ENST00000552823 PIGNO95427 931 aa5.68□□□□□ -1.5
LIMA1-215ENST00000552823 AHSGP02765 367 aa5.68□□□□□ -1.5
LIMA1-215ENST00000552823 PROCP04070 461 aa5.68□□□□□ -1.5
LIMA1-215ENST00000552823 DLDP09622 509 aaKnown RBP5.68□□□□□ -1.5
LIMA1-215ENST00000552823 HOXD8P13378 290 aaPredicted RBP5.68□□□□□ -1.5
LIMA1-215ENST00000552823 ENO3P13929 434 aaPredicted RBP5.68□□□□□ -1.5
LIMA1-215ENST00000552823 GJA1P17302 382 aa5.68□□□□□ -1.5
LIMA1-215ENST00000552823 GLDCP23378 1020 aa5.68□□□□□ -1.5
LIMA1-215ENST00000552823 PRKCHP24723 683 aa5.68□□□□□ -1.5
LIMA1-215ENST00000552823 PTPN4P29074 926 aa5.68□□□□□ -1.5
LIMA1-215ENST00000552823 OR1E1P30953 314 aa5.68□□□□□ -1.5
LIMA1-215ENST00000552823 OR1D2P34982 312 aa5.68□□□□□ -1.5
LIMA1-215ENST00000552823 PKNOX1P55347 436 aa5.68□□□□□ -1.5
LIMA1-215ENST00000552823 WNT3AP56704 352 aa5.68□□□□□ -1.5
LIMA1-215ENST00000552823 PRAMEP78395 509 aa5.68□□□□□ -1.5
LIMA1-215ENST00000552823 NSUN2Q08J23 767 aaKnown RBP eCLIP5.68□□□□□ -1.5
LIMA1-215ENST00000552823 PWP2Q15269 919 aaKnown RBP5.68□□□□□ -1.5
LIMA1-215ENST00000552823 ANO4Q32M45 955 aa5.68□□□□□ -1.5
LIMA1-215ENST00000552823 HSF5Q4G112 596 aaPredicted RBP5.68□□□□□ -1.5
LIMA1-215ENST00000552823 PPM1LQ5SGD2 360 aa5.68□□□□□ -1.5
LIMA1-215ENST00000552823 ITPRIPL1Q6GPH6 555 aa5.68□□□□□ -1.5
LIMA1-215ENST00000552823 RSPO2Q6UXX9 243 aaPredicted RBP5.68□□□□□ -1.5
LIMA1-215ENST00000552823 SDCCAG8Q86SQ7 713 aaPredicted RBP5.68□□□□□ -1.5
LIMA1-215ENST00000552823 ZNF598Q86UK7 904 aaKnown RBP5.68□□□□□ -1.5
LIMA1-215ENST00000552823 LGI2Q8N0V4 545 aa5.68□□□□□ -1.5
LIMA1-215ENST00000552823 ZNF276Q8N554 614 aa5.68□□□□□ -1.5
LIMA1-215ENST00000552823 FAM156AQ8NDB6 213 aa5.68□□□□□ -1.5
LIMA1-215ENST00000552823 SLC26A7Q8TE54 656 aa5.68□□□□□ -1.5
LIMA1-215ENST00000552823 PYDC1Q8WXC3 89 aa5.68□□□□□ -1.5
LIMA1-215ENST00000552823 IGSF8Q969P0 613 aa5.68□□□□□ -1.5
LIMA1-215ENST00000552823 TEKT5Q96M29 485 aa5.68□□□□□ -1.5
LIMA1-215ENST00000552823 OLFM3Q96PB7 478 aa5.68□□□□□ -1.5
LIMA1-215ENST00000552823 DDX50Q9BQ39 737 aaKnown RBP5.68□□□□□ -1.5
LIMA1-215ENST00000552823 C11orf84Q9BUA3 381 aaPredicted RBP5.68□□□□□ -1.5
LIMA1-215ENST00000552823 MARCH2Q9P0N8 246 aa5.68□□□□□ -1.5
LIMA1-215ENST00000552823 GIMAP2Q9UG22 337 aa5.68□□□□□ -1.5
LIMA1-215ENST00000552823 GGA2Q9UJY4 613 aa5.68□□□□□ -1.5
LIMA1-215ENST00000552823 EMCNQ9ULC0 261 aa5.68□□□□□ -1.5
LIMA1-215ENST00000552823 F5P12259 2224 aa5.68□□□□□ -1.5
LIMA1-215ENST00000552823 NUP214P35658 2090 aaPredicted RBP5.68□□□□□ -1.5
LIMA1-215ENST00000552823 A0A0D9SEW6 157 aa5.68□□□□□ -1.5
LIMA1-215ENST00000552823 HHLA1C9JL84 531 aa5.68□□□□□ -1.5
LIMA1-215ENST00000552823 CBX4O00257 560 aa5.68□□□□□ -1.5
LIMA1-215ENST00000552823 GSC2O15499 205 aa5.68□□□□□ -1.5
LIMA1-215ENST00000552823 IRAK2O43187 625 aa5.68□□□□□ -1.5
LIMA1-215ENST00000552823 GPR39O43194 453 aa5.68□□□□□ -1.5
LIMA1-215ENST00000552823 AP2A1O95782 977 aa5.68□□□□□ -1.5
LIMA1-215ENST00000552823 GSTA1P08263 222 aa5.68□□□□□ -1.5
LIMA1-215ENST00000552823 TPSB2P20231 275 aa5.68□□□□□ -1.5
LIMA1-215ENST00000552823 CYP2C18P33260 490 aa5.68□□□□□ -1.5
LIMA1-215ENST00000552823 PEX19P40855 299 aa5.68□□□□□ -1.5
LIMA1-215ENST00000552823 TAS2R39P59534 338 aa5.68□□□□□ -1.5
LIMA1-215ENST00000552823 TPSAB1Q15661 275 aa5.68□□□□□ -1.5
LIMA1-215ENST00000552823 SLC9B1Q4ZJI4 515 aa5.68□□□□□ -1.5
LIMA1-215ENST00000552823 RASIP1Q5U651 963 aa5.68□□□□□ -1.5
LIMA1-215ENST00000552823 DENND1CQ8IV53 801 aa5.68□□□□□ -1.5
LIMA1-215ENST00000552823 TMEM86AQ8N2M4 240 aa5.68□□□□□ -1.5
LIMA1-215ENST00000552823 OR52K2Q8NGK3 314 aa5.68□□□□□ -1.5
LIMA1-215ENST00000552823 MAPK15Q8TD08 544 aa5.68□□□□□ -1.5
LIMA1-215ENST00000552823 SH3RF2Q8TEC5 729 aa5.68□□□□□ -1.5
LIMA1-215ENST00000552823 HDAC10Q969S8 669 aa5.68□□□□□ -1.5
LIMA1-215ENST00000552823 TMA16Q96EY4 203 aaKnown RBP5.68□□□□□ -1.5
LIMA1-215ENST00000552823 TBATAQ96M53 351 aa5.68□□□□□ -1.5
LIMA1-215ENST00000552823 DEFB118Q96PH6 123 aa5.68□□□□□ -1.5
LIMA1-215ENST00000552823 SLC2A13Q96QE2 648 aa5.68□□□□□ -1.5
LIMA1-215ENST00000552823 OR52B2Q96RD2 323 aa5.68□□□□□ -1.5
LIMA1-215ENST00000552823 SEMA3CQ99985 751 aa5.68□□□□□ -1.5
LIMA1-215ENST00000552823 TBL1YQ9BQ87 522 aa5.68□□□□□ -1.5
LIMA1-215ENST00000552823 DHRS4Q9BTZ2 278 aa5.68□□□□□ -1.5
LIMA1-215ENST00000552823 GATA5Q9BWX5 397 aaPredicted RBP5.68□□□□□ -1.5
LIMA1-215ENST00000552823 MAF1Q9H063 256 aa5.68□□□□□ -1.5
LIMA1-215ENST00000552823 NMRAL1Q9HBL8 299 aa5.68□□□□□ -1.5
LIMA1-215ENST00000552823 GLOD4Q9HC38 313 aa5.68□□□□□ -1.5
LIMA1-215ENST00000552823 ARHGEF3Q9NR81 526 aa5.68□□□□□ -1.5
LIMA1-215ENST00000552823 MOCS1Q9NZB8 636 aa5.68□□□□□ -1.5
LIMA1-215ENST00000552823 NOP53Q9NZM5 478 aaKnown RBP5.68□□□□□ -1.5
LIMA1-215ENST00000552823 XPR1Q9UBH6 696 aa5.68□□□□□ -1.5
LIMA1-215ENST00000552823 UXTQ9UBK9 157 aaPredicted RBP5.68□□□□□ -1.5
LIMA1-215ENST00000552823 FAM50BQ9Y247 325 aa5.68□□□□□ -1.5
LIMA1-215ENST00000552823 SLC45A1Q9Y2W3 748 aa5.68□□□□□ -1.5
LIMA1-215ENST00000552823 HBS1LQ9Y450 684 aaKnown RBP5.68□□□□□ -1.5
LIMA1-215ENST00000552823 TRIM17Q9Y577 477 aa5.68□□□□□ -1.5
LIMA1-215ENST00000552823 PCDHB7Q9Y5E2 793 aa5.68□□□□□ -1.5
LIMA1-215ENST00000552823 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP5.67□□□□□ -1.5
LIMA1-215ENST00000552823 FAM95CA0A1B0GW59 222 aa5.67□□□□□ -1.5
LIMA1-215ENST00000552823 LRRC14BA6NHZ5 514 aa5.67□□□□□ -1.5
LIMA1-215ENST00000552823 CCDC22O60826 627 aa5.67□□□□□ -1.5
LIMA1-215ENST00000552823 ADAMTS4O75173 837 aa5.67□□□□□ -1.5
LIMA1-215ENST00000552823 GJB5O95377 273 aa5.67□□□□□ -1.5
LIMA1-215ENST00000552823 F9P00740 461 aa5.67□□□□□ -1.5
LIMA1-215ENST00000552823 C1QAP02745 245 aa5.67□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms