RNA–Protein interactions for RNA: ENST00000550592.1

LIMA1-205, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 567 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-205ENST00000550592 OSR1Q8TAX0 266 aaPredicted RBP5.29□□□□□ -1.56
LIMA1-205ENST00000550592 CNOT9Q92600 299 aaKnown RBP5.29□□□□□ -1.56
LIMA1-205ENST00000550592 KRTAP9-3Q9BYQ3 159 aa5.29□□□□□ -1.56
LIMA1-205ENST00000550592 FRMD8Q9BZ67 464 aaPredicted RBP5.29□□□□□ -1.56
LIMA1-205ENST00000550592 XRN2Q9H0D6 950 aaKnown RBP eCLIP5.29□□□□□ -1.56
LIMA1-205ENST00000550592 EPHX3Q9H6B9 360 aa5.29□□□□□ -1.56
LIMA1-205ENST00000550592 RIOX1Q9H6W3 641 aa5.29□□□□□ -1.56
LIMA1-205ENST00000550592 OLA1Q9NTK5 396 aaKnown RBP5.29□□□□□ -1.56
LIMA1-205ENST00000550592 UPB1Q9UBR1 384 aa5.29□□□□□ -1.56
LIMA1-205ENST00000550592 AASSQ9UDR5 926 aa5.29□□□□□ -1.56
LIMA1-205ENST00000550592 NAALADL1Q9UQQ1 740 aa5.29□□□□□ -1.56
LIMA1-205ENST00000550592 POLR2AP24928 1970 aaKnown RBP5.29□□□□□ -1.56
LIMA1-205ENST00000550592 A0A1W2PPH5 198 aa5.28□□□□□ -1.56
LIMA1-205ENST00000550592 PER2O15055 1255 aa5.28□□□□□ -1.56
LIMA1-205ENST00000550592 HBP1O60381 514 aa5.28□□□□□ -1.56
LIMA1-205ENST00000550592 PRKCGP05129 697 aa5.28□□□□□ -1.56
LIMA1-205ENST00000550592 CD63P08962 238 aa5.28□□□□□ -1.56
LIMA1-205ENST00000550592 FCGR2AP12318 317 aa5.28□□□□□ -1.56
LIMA1-205ENST00000550592 SLC12A2P55011 1212 aa5.28□□□□□ -1.56
LIMA1-205ENST00000550592 ARL13AQ5H913 290 aaPredicted RBP5.28□□□□□ -1.56
LIMA1-205ENST00000550592 WDR78Q5VTH9 848 aa5.28□□□□□ -1.56
LIMA1-205ENST00000550592 ZNF788Q6ZQV5 615 aa5.28□□□□□ -1.56
LIMA1-205ENST00000550592 MON1AQ86VX9 555 aa5.28□□□□□ -1.56
LIMA1-205ENST00000550592 AFAP1Q8N556 730 aa5.28□□□□□ -1.56
LIMA1-205ENST00000550592 ADAMTS15Q8TE58 950 aa5.28□□□□□ -1.56
LIMA1-205ENST00000550592 CENPIQ92674 756 aaPredicted RBP5.28□□□□□ -1.56
LIMA1-205ENST00000550592 C5orf34Q96MH7 638 aa5.28□□□□□ -1.56
LIMA1-205ENST00000550592 R3HDMLQ9H3Y0 253 aa5.28□□□□□ -1.56
LIMA1-205ENST00000550592 IPO11Q9UI26 975 aaKnown RBP5.28□□□□□ -1.56
LIMA1-205ENST00000550592 CLDN16Q9Y5I7 305 aa5.28□□□□□ -1.56
LIMA1-205ENST00000550592 NPHP4O75161 1426 aaPredicted RBP5.28□□□□□ -1.56
LIMA1-205ENST00000550592 A2ML1A8K2U0 1454 aa5.27□□□□□ -1.57
LIMA1-205ENST00000550592 RAPGEF6Q8TEU7 1601 aa5.27□□□□□ -1.57
LIMA1-205ENST00000550592 OR6C68A6NDL8 312 aa5.27□□□□□ -1.57
LIMA1-205ENST00000550592 RGS12O14924 1447 aa5.27□□□□□ -1.57
LIMA1-205ENST00000550592 STRNO43815 780 aa5.27□□□□□ -1.57
LIMA1-205ENST00000550592 EPHA8P29322 1005 aaPredicted RBP5.27□□□□□ -1.57
LIMA1-205ENST00000550592 CCR9P51686 369 aa5.27□□□□□ -1.57
LIMA1-205ENST00000550592 PGM5Q15124 567 aa5.27□□□□□ -1.57
LIMA1-205ENST00000550592 TSTQ16762 297 aaKnown RBP5.27□□□□□ -1.57
LIMA1-205ENST00000550592 C5orf22Q49AR2 442 aa5.27□□□□□ -1.57
LIMA1-205ENST00000550592 FAM171A1Q5VUB5 890 aa5.27□□□□□ -1.57
LIMA1-205ENST00000550592 ZNF782Q6ZMW2 699 aaPredicted RBP5.27□□□□□ -1.57
LIMA1-205ENST00000550592 PTF1AQ7RTS3 328 aa5.27□□□□□ -1.57
LIMA1-205ENST00000550592 CHD1LQ86WJ1 897 aa5.27□□□□□ -1.57
LIMA1-205ENST00000550592 TMEM217Q8N7C4 229 aa5.27□□□□□ -1.57
LIMA1-205ENST00000550592 NOC3LQ8WTT2 800 aaKnown RBP5.27□□□□□ -1.57
LIMA1-205ENST00000550592 UCMAQ8WVF2 138 aa5.27□□□□□ -1.57
LIMA1-205ENST00000550592 NELL1Q92832 810 aa5.27□□□□□ -1.57
LIMA1-205ENST00000550592 FRG2BQ96QU4 278 aa5.27□□□□□ -1.57
LIMA1-205ENST00000550592 USP44Q9H0E7 712 aa5.27□□□□□ -1.57
LIMA1-205ENST00000550592 TTYH1Q9H313 450 aaPredicted RBP5.27□□□□□ -1.57
LIMA1-205ENST00000550592 VEZTQ9HBM0 779 aa5.27□□□□□ -1.57
LIMA1-205ENST00000550592 MOV10Q9HCE1 1003 aaKnown RBP5.27□□□□□ -1.57
LIMA1-205ENST00000550592 ZDHHC7Q9NXF8 308 aa5.27□□□□□ -1.57
LIMA1-205ENST00000550592 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP5.27□□□□□ -1.57
LIMA1-205ENST00000550592 MYO3AQ8NEV4 1616 aa5.26□□□□□ -1.57
LIMA1-205ENST00000550592 AFF2P51816 1311 aa5.26□□□□□ -1.57
LIMA1-205ENST00000550592 WDR17Q8IZU2 1322 aa5.26□□□□□ -1.57
LIMA1-205ENST00000550592 KDM3AQ9Y4C1 1321 aa5.26□□□□□ -1.57
LIMA1-205ENST00000550592 REREQ9P2R6 1566 aa5.26□□□□□ -1.57
LIMA1-205ENST00000550592 C17orf113A0A1B0GUU1 675 aa5.26□□□□□ -1.57
LIMA1-205ENST00000550592 CXorf65A6NEN9 183 aa5.26□□□□□ -1.57
LIMA1-205ENST00000550592 MANSC4A6NHS7 340 aaPredicted RBP5.26□□□□□ -1.57
LIMA1-205ENST00000550592 C2CD4BA6NLJ0 364 aa5.26□□□□□ -1.57
LIMA1-205ENST00000550592 MSI1O43347 362 aaKnown RBP5.26□□□□□ -1.57
LIMA1-205ENST00000550592 USO1O60763 962 aaKnown RBP5.26□□□□□ -1.57
LIMA1-205ENST00000550592 NFATC1O95644 943 aa5.26□□□□□ -1.57
LIMA1-205ENST00000550592 NUDT3O95989 172 aa5.26□□□□□ -1.57
LIMA1-205ENST00000550592 TUBB4AP04350 444 aa5.26□□□□□ -1.57
LIMA1-205ENST00000550592 WNT1P04628 370 aa5.26□□□□□ -1.57
LIMA1-205ENST00000550592 LCKP06239 509 aa5.26□□□□□ -1.57
LIMA1-205ENST00000550592 COX7A2P14406 83 aa5.26□□□□□ -1.57
LIMA1-205ENST00000550592 CHRNA5P30532 468 aa5.26□□□□□ -1.57
LIMA1-205ENST00000550592 SKIV2L2P42285 1042 aaKnown RBP5.26□□□□□ -1.57
LIMA1-205ENST00000550592 UFM1P61960 85 aa5.26□□□□□ -1.57
LIMA1-205ENST00000550592 DCAF7P61962 342 aa5.26□□□□□ -1.57
LIMA1-205ENST00000550592 CFHR1Q03591 330 aa5.26□□□□□ -1.57
LIMA1-205ENST00000550592 SLC10A2Q12908 348 aaPredicted RBP5.26□□□□□ -1.57
LIMA1-205ENST00000550592 ZNF268Q14587 947 aaPredicted RBP5.26□□□□□ -1.57
LIMA1-205ENST00000550592 RPE65Q16518 533 aa5.26□□□□□ -1.57
LIMA1-205ENST00000550592 FBXO43Q4G163 708 aa5.26□□□□□ -1.57
LIMA1-205ENST00000550592 GPATCH4Q5T3I0 446 aaKnown RBP5.26□□□□□ -1.57
LIMA1-205ENST00000550592 MZT2BQ6NZ67 158 aa5.26□□□□□ -1.57
LIMA1-205ENST00000550592 C17orf99Q6UX52 265 aa5.26□□□□□ -1.57
LIMA1-205ENST00000550592 ZNF66Q6ZN08 573 aa5.26□□□□□ -1.57
LIMA1-205ENST00000550592 C4orf50Q6ZRC1 276 aa5.26□□□□□ -1.57
LIMA1-205ENST00000550592 GALNT16Q8N428 558 aa5.26□□□□□ -1.57
LIMA1-205ENST00000550592 HSPH1Q92598 858 aa5.26□□□□□ -1.57
LIMA1-205ENST00000550592 KAT2AQ92830 837 aa5.26□□□□□ -1.57
LIMA1-205ENST00000550592 PIMREGQ9BSJ6 248 aa5.26□□□□□ -1.57
LIMA1-205ENST00000550592 PDCL3Q9H2J4 239 aa5.26□□□□□ -1.57
LIMA1-205ENST00000550592 BLOC1S4Q9NUP1 217 aa5.26□□□□□ -1.57
LIMA1-205ENST00000550592 TAS2R10Q9NYW0 307 aa5.26□□□□□ -1.57
LIMA1-205ENST00000550592 KCND2Q9NZV8 630 aa5.26□□□□□ -1.57
LIMA1-205ENST00000550592 TBC1D14Q9P2M4 693 aa5.26□□□□□ -1.57
LIMA1-205ENST00000550592 ORC3Q9UBD5 711 aaPredicted RBP5.26□□□□□ -1.57
LIMA1-205ENST00000550592 FBXO40Q9UH90 709 aa5.26□□□□□ -1.57
LIMA1-205ENST00000550592 SLC8A2Q9UPR5 921 aa5.26□□□□□ -1.57
LIMA1-205ENST00000550592 ICKQ9UPZ9 632 aa5.26□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms