RNA–Protein interactions for RNA: ENST00000550267.1

VPS29-208, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 810 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-208ENST00000550267 FAM46CQ5VWP2 391 aa10.79□□□□□ -0.68
VPS29-208ENST00000550267 ERICH6BQ5W0A0 696 aa10.79□□□□□ -0.68
VPS29-208ENST00000550267 RAP1GAP2Q684P5 730 aa10.79□□□□□ -0.68
VPS29-208ENST00000550267 PMF1Q6P1K2 205 aa10.79□□□□□ -0.68
VPS29-208ENST00000550267 IGF2-ASQ6U949 168 aa10.79□□□□□ -0.68
VPS29-208ENST00000550267 EXD3Q8N9H8 876 aa10.79□□□□□ -0.68
VPS29-208ENST00000550267 DQX1Q8TE96 717 aaKnown RBP10.79□□□□□ -0.68
VPS29-208ENST00000550267 FOXD4L4Q8WXT5 416 aaPredicted RBP10.79□□□□□ -0.68
VPS29-208ENST00000550267 OR8D1Q8WZ84 308 aa10.79□□□□□ -0.68
VPS29-208ENST00000550267 ZNF592Q92610 1267 aa10.79□□□□□ -0.68
VPS29-208ENST00000550267 ATXN7L3BQ96GX2 97 aa10.79□□□□□ -0.68
VPS29-208ENST00000550267 SLC39A13Q96H72 371 aa10.79□□□□□ -0.68
VPS29-208ENST00000550267 PRR11Q96HE9 360 aaPredicted RBP10.79□□□□□ -0.68
VPS29-208ENST00000550267 PCMTD1Q96MG8 357 aaPredicted RBP10.79□□□□□ -0.68
VPS29-208ENST00000550267 SLC46A1Q96NT5 459 aa10.79□□□□□ -0.68
VPS29-208ENST00000550267 NOX5Q96PH1 765 aa10.79□□□□□ -0.68
VPS29-208ENST00000550267 NLGN3Q9NZ94 848 aa10.79□□□□□ -0.68
VPS29-208ENST00000550267 TJP2Q9UDY2 1190 aa10.79□□□□□ -0.68
VPS29-208ENST00000550267 IL17BQ9UHF5 180 aa10.79□□□□□ -0.68
VPS29-208ENST00000550267 TLR6Q9Y2C9 796 aa10.79□□□□□ -0.68
VPS29-208ENST00000550267 HEMK1Q9Y5R4 338 aaPredicted RBP10.79□□□□□ -0.68
VPS29-208ENST00000550267 A0A1W2PQU0 124 aa10.78□□□□□ -0.68
VPS29-208ENST00000550267 C1QTNF3-AMACRE9PGA6 284 aa10.78□□□□□ -0.68
VPS29-208ENST00000550267 K7ESM1 405 aa10.78□□□□□ -0.68
VPS29-208ENST00000550267 LZTS3O60299 673 aaPredicted RBP10.78□□□□□ -0.68
VPS29-208ENST00000550267 PROCP04070 461 aa10.78□□□□□ -0.68
VPS29-208ENST00000550267 RPL13P26373 211 aaKnown RBP10.78□□□□□ -0.68
VPS29-208ENST00000550267 SCTRP47872 440 aa10.78□□□□□ -0.68
VPS29-208ENST00000550267 CLDN2P57739 230 aa10.78□□□□□ -0.68
VPS29-208ENST00000550267 NFKB2Q00653 900 aa10.78□□□□□ -0.68
VPS29-208ENST00000550267 ZSCAN23Q3MJ62 389 aa10.78□□□□□ -0.68
VPS29-208ENST00000550267 ACCSLQ4AC99 568 aa10.78□□□□□ -0.68
VPS29-208ENST00000550267 CRTC1Q6UUV9 634 aa10.78□□□□□ -0.68
VPS29-208ENST00000550267 LCLAT1Q6UWP7 414 aa10.78□□□□□ -0.68
VPS29-208ENST00000550267 GCNT7Q6ZNI0 430 aa10.78□□□□□ -0.68
VPS29-208ENST00000550267 DSG4Q86SJ6 1040 aa10.78□□□□□ -0.68
VPS29-208ENST00000550267 TAC4Q86UU9 113 aa10.78□□□□□ -0.68
VPS29-208ENST00000550267 CHSY1Q86X52 802 aa10.78□□□□□ -0.68
VPS29-208ENST00000550267 CIR1Q86X95 450 aaPredicted RBP10.78□□□□□ -0.68
VPS29-208ENST00000550267 SLC22A18ASQ8N1D0 253 aa10.78□□□□□ -0.68
VPS29-208ENST00000550267 SLC35F5Q8WV83 523 aa10.78□□□□□ -0.68
VPS29-208ENST00000550267 TFAP2BQ92481 460 aa10.78□□□□□ -0.68
VPS29-208ENST00000550267 CCDC97Q96F63 343 aaPredicted RBP10.78□□□□□ -0.68
VPS29-208ENST00000550267 INTS4Q96HW7 963 aaKnown RBP10.78□□□□□ -0.68
VPS29-208ENST00000550267 SERPINB11Q96P15 392 aa10.78□□□□□ -0.68
VPS29-208ENST00000550267 MIS12Q9H081 205 aa10.78□□□□□ -0.68
VPS29-208ENST00000550267 PREBQ9HCU5 417 aa10.78□□□□□ -0.68
VPS29-208ENST00000550267 PPM1HQ9ULR3 514 aa10.78□□□□□ -0.68
VPS29-208ENST00000550267 NAALADL1Q9UQQ1 740 aa10.78□□□□□ -0.68
VPS29-208ENST00000550267 ENTPD2Q9Y5L3 495 aa10.78□□□□□ -0.68
VPS29-208ENST00000550267 CPED1A4D0V7 1026 aa10.77□□□□□ -0.69
VPS29-208ENST00000550267 NEMP2A6NFY4 417 aa10.77□□□□□ -0.69
VPS29-208ENST00000550267 CDRT15L2A8MXV6 281 aa10.77□□□□□ -0.69
VPS29-208ENST00000550267 SCAMP1O15126 338 aa10.77□□□□□ -0.69
VPS29-208ENST00000550267 BNIP3LO60238 219 aa10.77□□□□□ -0.69
VPS29-208ENST00000550267 ZNF18P17022 549 aa10.77□□□□□ -0.69
VPS29-208ENST00000550267 AKT2P31751 481 aa10.77□□□□□ -0.69
VPS29-208ENST00000550267 NUCB2P80303 420 aa10.77□□□□□ -0.69
VPS29-208ENST00000550267 SULT2A1Q06520 285 aa10.77□□□□□ -0.69
VPS29-208ENST00000550267 LRMPQ12912 555 aa10.77□□□□□ -0.69
VPS29-208ENST00000550267 SLC12A1Q13621 1099 aa10.77□□□□□ -0.69
VPS29-208ENST00000550267 CDKN3Q16667 212 aa10.77□□□□□ -0.69
VPS29-208ENST00000550267 ZNF284Q2VY69 593 aa10.77□□□□□ -0.69
VPS29-208ENST00000550267 CBWD6Q4V339 395 aa10.77□□□□□ -0.69
VPS29-208ENST00000550267 ZCWPW2Q504Y3 356 aa10.77□□□□□ -0.69
VPS29-208ENST00000550267 CBWD3Q5JTY5 395 aa10.77□□□□□ -0.69
VPS29-208ENST00000550267 COLEC12Q5KU26 742 aa10.77□□□□□ -0.69
VPS29-208ENST00000550267 CBWD5Q5RIA9 395 aa10.77□□□□□ -0.69
VPS29-208ENST00000550267 PIP5KL1Q5T9C9 394 aa10.77□□□□□ -0.69
VPS29-208ENST00000550267 OR6B2Q6IFH4 312 aa10.77□□□□□ -0.69
VPS29-208ENST00000550267 GUSBP11Q6P575 273 aa10.77□□□□□ -0.69
VPS29-208ENST00000550267 EFL1Q7Z2Z2 1120 aaKnown RBP10.77□□□□□ -0.69
VPS29-208ENST00000550267 CCAR2Q8N163 923 aaKnown RBP10.77□□□□□ -0.69
VPS29-208ENST00000550267 UBR7Q8N806 425 aa10.77□□□□□ -0.69
VPS29-208ENST00000550267 ERCC4Q92889 916 aaPredicted RBP10.77□□□□□ -0.69
VPS29-208ENST00000550267 ARRDC3Q96B67 414 aa10.77□□□□□ -0.69
VPS29-208ENST00000550267 ZSWIM1Q9BR11 485 aa10.77□□□□□ -0.69
VPS29-208ENST00000550267 DUSP23Q9BVJ7 150 aa10.77□□□□□ -0.69
VPS29-208ENST00000550267 USP29Q9HBJ7 922 aa10.77□□□□□ -0.69
VPS29-208ENST00000550267 DNAJC28Q9NX36 388 aa10.77□□□□□ -0.69
VPS29-208ENST00000550267 KIAA1257Q9ULG3 409 aa10.77□□□□□ -0.69
VPS29-208ENST00000550267 HECTD1Q9ULT8 2610 aa10.77□□□□□ -0.69
VPS29-208ENST00000550267 COL27A1Q8IZC6 1860 aaPredicted RBP10.76□□□□□ -0.69
VPS29-208ENST00000550267 KNTC1P50748 2209 aa10.76□□□□□ -0.69
VPS29-208ENST00000550267 F5H5T6 163 aa10.76□□□□□ -0.69
VPS29-208ENST00000550267 M0QYV0 167 aa10.76□□□□□ -0.69
VPS29-208ENST00000550267 MCF2LO15068 1137 aa10.76□□□□□ -0.69
VPS29-208ENST00000550267 CASC3O15234 703 aaKnown RBP10.76□□□□□ -0.69
VPS29-208ENST00000550267 EFSO43281 561 aa10.76□□□□□ -0.69
VPS29-208ENST00000550267 ATP9BO43861 1147 aa10.76□□□□□ -0.69
VPS29-208ENST00000550267 STX10O60499 249 aa10.76□□□□□ -0.69
VPS29-208ENST00000550267 TNFSF15O95150 251 aa10.76□□□□□ -0.69
VPS29-208ENST00000550267 CALCAP01258 141 aa10.76□□□□□ -0.69
VPS29-208ENST00000550267 APOEP02649 317 aa10.76□□□□□ -0.69
VPS29-208ENST00000550267 HNRNPA2B1P22626 353 aaKnown RBP10.76□□□□□ -0.69
VPS29-208ENST00000550267 PLK1P53350 603 aa10.76□□□□□ -0.69
VPS29-208ENST00000550267 YWHAEP62258 255 aaKnown RBP10.76□□□□□ -0.69
VPS29-208ENST00000550267 DRAP1Q14919 205 aaPredicted RBP10.76□□□□□ -0.69
VPS29-208ENST00000550267 DLG2Q15700 870 aa10.76□□□□□ -0.69
VPS29-208ENST00000550267 ARL13BQ3SXY8 428 aa10.76□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 48.3 ms