RNA–Protein interactions for RNA: ENST00000549578.5

VPS29-206, Transcript of VPS29, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS29, Length 1,523 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-206ENST00000549578 ATP5OP48047 213 aa21.58■■□□□ 1.04
VPS29-206ENST00000549578 VASPP50552 380 aaPredicted RBP21.58■■□□□ 1.04
VPS29-206ENST00000549578 CLCN5P51795 746 aa21.58■■□□□ 1.04
VPS29-206ENST00000549578 CLCN6P51797 869 aa21.58■■□□□ 1.04
VPS29-206ENST00000549578 SLC10A7Q0GE19 358 aa21.58■■□□□ 1.04
VPS29-206ENST00000549578 PRKD1Q15139 912 aaPredicted RBP21.58■■□□□ 1.04
VPS29-206ENST00000549578 INO80DQ53TQ3 878 aaPredicted RBP21.58■■□□□ 1.04
VPS29-206ENST00000549578 FAM182AQ5T1J6 154 aa21.58■■□□□ 1.04
VPS29-206ENST00000549578 TMCO4Q5TGY1 634 aa21.58■■□□□ 1.04
VPS29-206ENST00000549578 SDE2Q6IQ49 451 aa21.58■■□□□ 1.04
VPS29-206ENST00000549578 TIGD7Q6NT04 549 aaPredicted RBP21.58■■□□□ 1.04
VPS29-206ENST00000549578 C22orf39Q6P5X5 142 aa21.58■■□□□ 1.04
VPS29-206ENST00000549578 ACTRT1Q8TDG2 376 aa21.58■■□□□ 1.04
VPS29-206ENST00000549578 TFB1MQ8WVM0 346 aaKnown RBP21.58■■□□□ 1.04
VPS29-206ENST00000549578 QKIQ96PU8 341 aaKnown RBP eCLIP21.58■■□□□ 1.041e-6■■■■■ 30.1
VPS29-206ENST00000549578 GABRG3Q99928 467 aa21.58■■□□□ 1.04
VPS29-206ENST00000549578 TNKS2Q9H2K2 1166 aa21.58■■□□□ 1.04
VPS29-206ENST00000549578 TTC7AQ9ULT0 858 aaPredicted RBP21.58■■□□□ 1.04
VPS29-206ENST00000549578 MMP17Q9ULZ9 603 aa21.58■■□□□ 1.04
VPS29-206ENST00000549578 ZDBF2Q9HCK1 2354 aa21.58■■□□□ 1.04
VPS29-206ENST00000549578 CHURC1-FNTBB4DL54 471 aa21.57■■□□□ 1.04
VPS29-206ENST00000549578 KCNK1O00180 336 aa21.57■■□□□ 1.04
VPS29-206ENST00000549578 MCF2LO15068 1137 aa21.57■■□□□ 1.04
VPS29-206ENST00000549578 MATN3O15232 486 aa21.57■■□□□ 1.04
VPS29-206ENST00000549578 RBP3P10745 1247 aa21.57■■□□□ 1.04
VPS29-206ENST00000549578 HOXB2P14652 356 aa21.57■■□□□ 1.04
VPS29-206ENST00000549578 MTAPQ13126 283 aa21.57■■□□□ 1.04
VPS29-206ENST00000549578 XRCC4Q13426 336 aa21.57■■□□□ 1.04
VPS29-206ENST00000549578 LBRQ14739 615 aaKnown RBP21.57■■□□□ 1.04
VPS29-206ENST00000549578 CYTH1Q15438 398 aa21.57■■□□□ 1.04
VPS29-206ENST00000549578 HNRNPA1L2Q32P51 320 aaKnown RBP21.57■■□□□ 1.04
VPS29-206ENST00000549578 HSF5Q4G112 596 aaPredicted RBP21.57■■□□□ 1.04
VPS29-206ENST00000549578 Q6ZVU0 165 aa21.57■■□□□ 1.04
VPS29-206ENST00000549578 C1orf54Q8WWF1 131 aa21.57■■□□□ 1.04
VPS29-206ENST00000549578 ZNF419Q96HQ0 510 aaPredicted RBP21.57■■□□□ 1.04
VPS29-206ENST00000549578 ZNF599Q96NL3 588 aa21.57■■□□□ 1.04
VPS29-206ENST00000549578 TM6SF2Q9BZW4 377 aa21.57■■□□□ 1.04
VPS29-206ENST00000549578 BRD8Q9H0E9 1235 aa21.57■■□□□ 1.04
VPS29-206ENST00000549578 C11orf16Q9NQ32 467 aa21.57■■□□□ 1.04
VPS29-206ENST00000549578 KIF2AO00139 706 aaPredicted RBP21.56■■□□□ 1.04
VPS29-206ENST00000549578 BNIP3LO60238 219 aa21.56■■□□□ 1.04
VPS29-206ENST00000549578 ZNF821O75541 412 aaPredicted RBP21.56■■□□□ 1.04
VPS29-206ENST00000549578 SLC45A4Q5BKX6 768 aa21.56■■□□□ 1.04
VPS29-206ENST00000549578 EOGTQ5NDL2 527 aa21.56■■□□□ 1.04
VPS29-206ENST00000549578 KIAA1211LQ6NV74 962 aa21.56■■□□□ 1.04
VPS29-206ENST00000549578 BMP8AQ7Z5Y6 402 aa21.56■■□□□ 1.04
VPS29-206ENST00000549578 CREG2Q8IUH2 290 aa21.56■■□□□ 1.04
VPS29-206ENST00000549578 FBXL6Q8N531 539 aa21.56■■□□□ 1.04
VPS29-206ENST00000549578 TMEM105Q8N8V8 129 aa21.56■■□□□ 1.04
VPS29-206ENST00000549578 NSMCE1Q8WV22 266 aa21.56■■□□□ 1.04
VPS29-206ENST00000549578 MAIP1Q8WWC4 291 aa21.56■■□□□ 1.04
VPS29-206ENST00000549578 CASKIN2Q8WXE0 1202 aa21.56■■□□□ 1.04
VPS29-206ENST00000549578 MAML1Q92585 1016 aa21.56■■□□□ 1.04
VPS29-206ENST00000549578 PTPRN2Q92932 1015 aa21.56■■□□□ 1.04
VPS29-206ENST00000549578 CEP44Q9C0F1 390 aa21.56■■□□□ 1.04
VPS29-206ENST00000549578 SEPT10Q9P0V9 454 aa21.56■■□□□ 1.04
VPS29-206ENST00000549578 DNPEPQ9ULA0 475 aa21.56■■□□□ 1.04
VPS29-206ENST00000549578 SLC8A2Q9UPR5 921 aa21.56■■□□□ 1.04
VPS29-206ENST00000549578 HACD1B0YJ81 288 aa21.55■■□□□ 1.04
VPS29-206ENST00000549578 ATG13O75143 517 aa21.55■■□□□ 1.04
VPS29-206ENST00000549578 CCNB1P14635 433 aa21.55■■□□□ 1.04
VPS29-206ENST00000549578 COL9A1P20849 921 aa21.55■■□□□ 1.04
VPS29-206ENST00000549578 RHOAP61586 193 aa21.55■■□□□ 1.04
VPS29-206ENST00000549578 ZNF33AQ06730 810 aa21.55■■□□□ 1.04
VPS29-206ENST00000549578 RFTN1Q14699 578 aaPredicted RBP21.55■■□□□ 1.04
VPS29-206ENST00000549578 MARC1Q5VT66 337 aa21.55■■□□□ 1.04
VPS29-206ENST00000549578 TMEM92Q6UXU6 159 aa21.55■■□□□ 1.04
VPS29-206ENST00000549578 SPEM1Q8N4L4 309 aa21.55■■□□□ 1.04
VPS29-206ENST00000549578 TSEN2Q8NCE0 465 aaKnown RBP21.55■■□□□ 1.04
VPS29-206ENST00000549578 SLC35B2Q8TB61 432 aa21.55■■□□□ 1.04
VPS29-206ENST00000549578 FATE1Q969F0 183 aa21.55■■□□□ 1.04
VPS29-206ENST00000549578 EXOC2Q96KP1 924 aa21.55■■□□□ 1.04
VPS29-206ENST00000549578 CINPQ9BW66 212 aaPredicted RBP21.55■■□□□ 1.04
VPS29-206ENST00000549578 AP1M1Q9BXS5 423 aa21.55■■□□□ 1.04
VPS29-206ENST00000549578 CEP41Q9BYV8 373 aa21.55■■□□□ 1.04
VPS29-206ENST00000549578 LHX3Q9UBR4 397 aa21.55■■□□□ 1.04
VPS29-206ENST00000549578 CKAP5Q14008 2032 aa21.55■■□□□ 1.04
VPS29-206ENST00000549578 EDDM13A0A1B0GTR0 161 aa21.55■■□□□ 1.04
VPS29-206ENST00000549578 A0A1W2PQF6 199 aa21.55■■□□□ 1.04
VPS29-206ENST00000549578 LIASO43766 372 aa21.55■■□□□ 1.04
VPS29-206ENST00000549578 SIN3BO75182 1162 aa21.55■■□□□ 1.04
VPS29-206ENST00000549578 TUBB4AP04350 444 aa21.55■■□□□ 1.04
VPS29-206ENST00000549578 RBL1P28749 1068 aa21.55■■□□□ 1.04
VPS29-206ENST00000549578 MMP13P45452 471 aa21.55■■□□□ 1.04
VPS29-206ENST00000549578 ZBTB17Q13105 803 aa21.55■■□□□ 1.04
VPS29-206ENST00000549578 SNX1Q13596 522 aa21.55■■□□□ 1.04
VPS29-206ENST00000549578 HNRNPDQ14103 355 aaKnown RBP21.55■■□□□ 1.04
VPS29-206ENST00000549578 ZNF235Q14590 738 aa21.55■■□□□ 1.04
VPS29-206ENST00000549578 ATXN7L2Q5T6C5 722 aaPredicted RBP21.55■■□□□ 1.04
VPS29-206ENST00000549578 C9orf64Q5T6V5 341 aa21.55■■□□□ 1.04
VPS29-206ENST00000549578 DARS2Q6PI48 645 aaKnown RBP21.55■■□□□ 1.04
VPS29-206ENST00000549578 SYT13Q7L8C5 426 aa21.55■■□□□ 1.04
VPS29-206ENST00000549578 METTL3Q86U44 580 aaKnown RBP21.55■■□□□ 1.04
VPS29-206ENST00000549578 CDKL3Q8IVW4 592 aaPredicted RBP21.55■■□□□ 1.04
VPS29-206ENST00000549578 PCDH20Q8N6Y1 951 aaKnown RBP21.55■■□□□ 1.04
VPS29-206ENST00000549578 PRELID2Q8N945 189 aa21.55■■□□□ 1.04
VPS29-206ENST00000549578 ISG20Q96AZ6 181 aaKnown RBP21.55■■□□□ 1.04
VPS29-206ENST00000549578 NAP1L3Q99457 506 aaPredicted RBP21.55■■□□□ 1.04
VPS29-206ENST00000549578 PRSS16Q9NQE7 514 aa21.55■■□□□ 1.04
VPS29-206ENST00000549578 SEPT3Q9UH03 358 aa21.55■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms