RNA–Protein interactions for RNA: ENST00000548945.6

PTCH1-218, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 243 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-218ENST00000548945 ARRDC3Q96B67 414 aa13.15□□□□□ -0.3
PTCH1-218ENST00000548945 USP29Q9HBJ7 922 aa13.15□□□□□ -0.3
PTCH1-218ENST00000548945 SIX2Q9NPC8 291 aa13.15□□□□□ -0.3
PTCH1-218ENST00000548945 KIAA1468Q9P260 1216 aa13.15□□□□□ -0.3
PTCH1-218ENST00000548945 CA5BQ9Y2D0 317 aa13.15□□□□□ -0.3
PTCH1-218ENST00000548945 TENM4Q6N022 2769 aa13.15□□□□□ -0.31
PTCH1-218ENST00000548945 RP1P56715 2156 aa13.14□□□□□ -0.31
PTCH1-218ENST00000548945 ILVBLA1L0T0 632 aa13.14□□□□□ -0.31
PTCH1-218ENST00000548945 NEMP2A6NFY4 417 aa13.14□□□□□ -0.31
PTCH1-218ENST00000548945 I6L893 689 aaPredicted RBP13.14□□□□□ -0.31
PTCH1-218ENST00000548945 FOXN3O00409 490 aaPredicted RBP13.14□□□□□ -0.31
PTCH1-218ENST00000548945 RIOK3O14730 519 aaKnown RBP13.14□□□□□ -0.31
PTCH1-218ENST00000548945 ATXN7O15265 892 aaPredicted RBP13.14□□□□□ -0.31
PTCH1-218ENST00000548945 SMAD6O43541 496 aaKnown RBP13.14□□□□□ -0.31
PTCH1-218ENST00000548945 PIAS2O75928 621 aa13.14□□□□□ -0.31
PTCH1-218ENST00000548945 MT-CO3P00414 261 aa13.14□□□□□ -0.31
PTCH1-218ENST00000548945 GP1BAP07359 652 aa13.14□□□□□ -0.31
PTCH1-218ENST00000548945 ALPPL2P10696 532 aa13.14□□□□□ -0.31
PTCH1-218ENST00000548945 PRLRP16471 622 aa13.14□□□□□ -0.31
PTCH1-218ENST00000548945 RRM1P23921 792 aa13.14□□□□□ -0.31
PTCH1-218ENST00000548945 CDH5P33151 784 aaPredicted RBP13.14□□□□□ -0.31
PTCH1-218ENST00000548945 RECQLP46063 649 aaPredicted RBP13.14□□□□□ -0.31
PTCH1-218ENST00000548945 DAB2P98082 770 aa13.14□□□□□ -0.31
PTCH1-218ENST00000548945 APBA1Q02410 837 aa13.14□□□□□ -0.31
PTCH1-218ENST00000548945 DEUP1Q05D60 604 aa13.14□□□□□ -0.31
PTCH1-218ENST00000548945 TBC1D25Q3MII6 688 aa13.14□□□□□ -0.31
PTCH1-218ENST00000548945 RETSATQ6NUM9 610 aa13.14□□□□□ -0.31
PTCH1-218ENST00000548945 C22orf39Q6P5X5 142 aa13.14□□□□□ -0.31
PTCH1-218ENST00000548945 SLC47A2Q86VL8 602 aa13.14□□□□□ -0.31
PTCH1-218ENST00000548945 FAM181AQ8N9Y4 354 aa13.14□□□□□ -0.31
PTCH1-218ENST00000548945 TMEM35BQ8NCS4 154 aa13.14□□□□□ -0.31
PTCH1-218ENST00000548945 HAPLN3Q96S86 360 aa13.14□□□□□ -0.31
PTCH1-218ENST00000548945 CEP44Q9C0F1 390 aa13.14□□□□□ -0.31
PTCH1-218ENST00000548945 ANLNQ9NQW6 1124 aa13.14□□□□□ -0.31
PTCH1-218ENST00000548945 GPR27Q9NS67 375 aa13.14□□□□□ -0.31
PTCH1-218ENST00000548945 EVA1BQ9NVM1 165 aa13.14□□□□□ -0.31
PTCH1-218ENST00000548945 NLGN3Q9NZ94 848 aa13.14□□□□□ -0.31
PTCH1-218ENST00000548945 IL36AQ9UHA7 158 aa13.14□□□□□ -0.31
PTCH1-218ENST00000548945 DNAJC12Q9UKB3 198 aa13.14□□□□□ -0.31
PTCH1-218ENST00000548945 HS3ST3A1Q9Y663 406 aa13.14□□□□□ -0.31
PTCH1-218ENST00000548945 PIEZO2Q9H5I5 2752 aa13.14□□□□□ -0.31
PTCH1-218ENST00000548945 A0A0D9SEW6 157 aa13.13□□□□□ -0.31
PTCH1-218ENST00000548945 TEX51A0A1B0GUA7 166 aa13.13□□□□□ -0.31
PTCH1-218ENST00000548945 A6NNZ2 444 aa13.13□□□□□ -0.31
PTCH1-218ENST00000548945 K7ERQ8 282 aa13.13□□□□□ -0.31
PTCH1-218ENST00000548945 AP1G1O43747 822 aa13.13□□□□□ -0.31
PTCH1-218ENST00000548945 GADD45BO75293 160 aaPredicted RBP13.13□□□□□ -0.31
PTCH1-218ENST00000548945 PCDH8O95206 1070 aa13.13□□□□□ -0.31
PTCH1-218ENST00000548945 GIMD1P0DJR0 217 aa13.13□□□□□ -0.31
PTCH1-218ENST00000548945 ITGB7P26010 798 aa13.13□□□□□ -0.31
PTCH1-218ENST00000548945 OR1E1P30953 314 aa13.13□□□□□ -0.31
PTCH1-218ENST00000548945 MTIF2P46199 727 aaKnown RBP13.13□□□□□ -0.31
PTCH1-218ENST00000548945 SULT1E1P49888 294 aa13.13□□□□□ -0.31
PTCH1-218ENST00000548945 DUSP3P51452 185 aaPredicted RBP13.13□□□□□ -0.31
PTCH1-218ENST00000548945 HNRNPKP61978 463 aaKnown RBP eCLIP13.13□□□□□ -0.31
PTCH1-218ENST00000548945 RPS21P63220 83 aaKnown RBP13.13□□□□□ -0.31
PTCH1-218ENST00000548945 C19orf57Q0VDD7 668 aa13.13□□□□□ -0.31
PTCH1-218ENST00000548945 CDCP2Q5VXM1 449 aa13.13□□□□□ -0.31
PTCH1-218ENST00000548945 KIAA1161Q6NSJ0 714 aa13.13□□□□□ -0.31
PTCH1-218ENST00000548945 GCNT7Q6ZNI0 430 aa13.13□□□□□ -0.31
PTCH1-218ENST00000548945 ARCQ7LC44 396 aa13.13□□□□□ -0.31
PTCH1-218ENST00000548945 CREBRFQ8IUR6 639 aa13.13□□□□□ -0.31
PTCH1-218ENST00000548945 LSMEM2Q8N112 164 aa13.13□□□□□ -0.31
PTCH1-218ENST00000548945 PCDH20Q8N6Y1 951 aaKnown RBP13.13□□□□□ -0.31
PTCH1-218ENST00000548945 CHST14Q8NCH0 376 aa13.13□□□□□ -0.31
PTCH1-218ENST00000548945 OR13H1Q8NG92 308 aa13.13□□□□□ -0.31
PTCH1-218ENST00000548945 C18orf8Q96DM3 657 aa13.13□□□□□ -0.31
PTCH1-218ENST00000548945 DUSP23Q9BVJ7 150 aa13.13□□□□□ -0.31
PTCH1-218ENST00000548945 CALN1Q9BXU9 219 aa13.13□□□□□ -0.31
PTCH1-218ENST00000548945 RETREG1Q9H6L5 497 aa13.13□□□□□ -0.31
PTCH1-218ENST00000548945 UCKL1Q9NWZ5 548 aa13.13□□□□□ -0.31
PTCH1-218ENST00000548945 ZNF212Q9UDV6 495 aa13.13□□□□□ -0.31
PTCH1-218ENST00000548945 AJAP1Q9UKB5 411 aaPredicted RBP13.13□□□□□ -0.31
PTCH1-218ENST00000548945 ZFR2Q9UPR6 939 aaKnown RBP13.13□□□□□ -0.31
PTCH1-218ENST00000548945 SCAMP1O15126 338 aa13.12□□□□□ -0.31
PTCH1-218ENST00000548945 LZTS3O60299 673 aaPredicted RBP13.12□□□□□ -0.31
PTCH1-218ENST00000548945 OPA1O60313 960 aa13.12□□□□□ -0.31
PTCH1-218ENST00000548945 ZNF821O75541 412 aaPredicted RBP13.12□□□□□ -0.31
PTCH1-218ENST00000548945 LEFTY1O75610 366 aa13.12□□□□□ -0.31
PTCH1-218ENST00000548945 ZMPSTE24O75844 475 aa13.12□□□□□ -0.31
PTCH1-218ENST00000548945 DXOO77932 396 aaKnown RBP13.12□□□□□ -0.31
PTCH1-218ENST00000548945 LSM8O95777 96 aaKnown RBP13.12□□□□□ -0.31
PTCH1-218ENST00000548945 TFE3P19532 575 aaPredicted RBP13.12□□□□□ -0.31
PTCH1-218ENST00000548945 SERPINH1P50454 418 aaKnown RBP13.12□□□□□ -0.31
PTCH1-218ENST00000548945 NEK3P51956 506 aa13.12□□□□□ -0.31
PTCH1-218ENST00000548945 RNASE9P60153 205 aaKnown RBP13.12□□□□□ -0.31
PTCH1-218ENST00000548945 TLE3Q04726 772 aa13.12□□□□□ -0.31
PTCH1-218ENST00000548945 MAN2A1Q16706 1144 aa13.12□□□□□ -0.31
PTCH1-218ENST00000548945 ARSIQ5FYB1 569 aa13.12□□□□□ -0.31
PTCH1-218ENST00000548945 ARTNQ5T4W7 220 aa13.12□□□□□ -0.31
PTCH1-218ENST00000548945 FAM102AQ5T9C2 384 aaPredicted RBP13.12□□□□□ -0.31
PTCH1-218ENST00000548945 LINGO4Q6UY18 593 aa13.12□□□□□ -0.31
PTCH1-218ENST00000548945 KYAT3Q6YP21 454 aaKnown RBP13.12□□□□□ -0.31
PTCH1-218ENST00000548945 DPY19L3Q6ZPD9 716 aa13.12□□□□□ -0.31
PTCH1-218ENST00000548945 BNIPLQ7Z465 357 aa13.12□□□□□ -0.31
PTCH1-218ENST00000548945 TFAP2DQ7Z6R9 452 aa13.12□□□□□ -0.31
PTCH1-218ENST00000548945 ERICH1Q86X53 443 aa13.12□□□□□ -0.31
PTCH1-218ENST00000548945 FAM114A1Q8IWE2 563 aa13.12□□□□□ -0.31
PTCH1-218ENST00000548945 PLPP6Q8IY26 295 aa13.12□□□□□ -0.31
PTCH1-218ENST00000548945 SLC22A18ASQ8N1D0 253 aa13.12□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms