RNA–Protein interactions for RNA: ENST00000548539.1

VPS29-205, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 598 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-205ENST00000548539 KRTAP5-9P26371 169 aa4.44□□□□□ -1.7
VPS29-205ENST00000548539 RGS2P41220 211 aa4.44□□□□□ -1.7
VPS29-205ENST00000548539 POLGP54098 1239 aaPredicted RBP4.44□□□□□ -1.7
VPS29-205ENST00000548539 UFM1P61960 85 aa4.44□□□□□ -1.7
VPS29-205ENST00000548539 EFNB1P98172 346 aa4.44□□□□□ -1.7
VPS29-205ENST00000548539 PTP4A2Q12974 167 aa4.44□□□□□ -1.7
VPS29-205ENST00000548539 DCTN2Q13561 401 aaKnown RBP4.44□□□□□ -1.7
VPS29-205ENST00000548539 GALNT3Q14435 633 aa4.44□□□□□ -1.7
VPS29-205ENST00000548539 SEMA3AQ14563 771 aa4.44□□□□□ -1.7
VPS29-205ENST00000548539 FAM171A1Q5VUB5 890 aa4.44□□□□□ -1.7
VPS29-205ENST00000548539 MORN5Q5VZ52 161 aa4.44□□□□□ -1.7
VPS29-205ENST00000548539 AWAT2Q6E213 333 aa4.44□□□□□ -1.7
VPS29-205ENST00000548539 ITPRIPL1Q6GPH6 555 aa4.44□□□□□ -1.7
VPS29-205ENST00000548539 MZT2BQ6NZ67 158 aa4.44□□□□□ -1.7
VPS29-205ENST00000548539 B4GALNT4Q76KP1 1039 aa4.44□□□□□ -1.7
VPS29-205ENST00000548539 DIS3L2Q8IYB7 885 aaKnown RBP4.44□□□□□ -1.7
VPS29-205ENST00000548539 PAQR4Q8N4S7 273 aaPredicted RBP4.44□□□□□ -1.7
VPS29-205ENST00000548539 ARL14EPQ8N8R7 260 aaPredicted RBP4.44□□□□□ -1.7
VPS29-205ENST00000548539 DNAAF1Q8NEP3 725 aa4.44□□□□□ -1.7
VPS29-205ENST00000548539 NFKBIDQ8NI38 313 aa4.44□□□□□ -1.7
VPS29-205ENST00000548539 ZCCHC10Q8TBK6 192 aa4.44□□□□□ -1.7
VPS29-205ENST00000548539 METTL6Q8TCB7 284 aa4.44□□□□□ -1.7
VPS29-205ENST00000548539 ZFPM2Q8WW38 1151 aa4.44□□□□□ -1.7
VPS29-205ENST00000548539 HSPH1Q92598 858 aa4.44□□□□□ -1.7
VPS29-205ENST00000548539 KAT2AQ92830 837 aa4.44□□□□□ -1.7
VPS29-205ENST00000548539 C5orf34Q96MH7 638 aa4.44□□□□□ -1.7
VPS29-205ENST00000548539 SCNM1Q9BWG6 230 aa4.44□□□□□ -1.7
VPS29-205ENST00000548539 HEMGNQ9BXL5 484 aa4.44□□□□□ -1.7
VPS29-205ENST00000548539 CXorf56Q9H5V9 222 aa4.44□□□□□ -1.7
VPS29-205ENST00000548539 TBC1D22BQ9NU19 505 aa4.44□□□□□ -1.7
VPS29-205ENST00000548539 TAS2R10Q9NYW0 307 aa4.44□□□□□ -1.7
VPS29-205ENST00000548539 IL1RAPL1Q9NZN1 696 aa4.44□□□□□ -1.7
VPS29-205ENST00000548539 NLKQ9UBE8 527 aa4.44□□□□□ -1.7
VPS29-205ENST00000548539 PEMTQ9UBM1 199 aa4.44□□□□□ -1.7
VPS29-205ENST00000548539 ICKQ9UPZ9 632 aa4.44□□□□□ -1.7
VPS29-205ENST00000548539 DHDHQ9UQ10 334 aa4.44□□□□□ -1.7
VPS29-205ENST00000548539 OSGIN2Q9Y236 505 aa4.44□□□□□ -1.7
VPS29-205ENST00000548539 A0A0A0MQY5 61 aa4.43□□□□□ -1.7
VPS29-205ENST00000548539 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP4.43□□□□□ -1.7
VPS29-205ENST00000548539 TEX13CA0A0J9YWL9 993 aa4.43□□□□□ -1.7
VPS29-205ENST00000548539 GOLGA6L10A0A0M3HER8 536 aa4.43□□□□□ -1.7
VPS29-205ENST00000548539 FSD2A1L4K1 749 aa4.43□□□□□ -1.7
VPS29-205ENST00000548539 GAGE10A6NGK3 116 aa4.43□□□□□ -1.7
VPS29-205ENST00000548539 KCNJ18B7U540 433 aa4.43□□□□□ -1.7
VPS29-205ENST00000548539 GFPT2O94808 682 aa4.43□□□□□ -1.7
VPS29-205ENST00000548539 DDX58O95786 925 aaKnown RBP4.43□□□□□ -1.7
VPS29-205ENST00000548539 ADAP00813 363 aa4.43□□□□□ -1.7
VPS29-205ENST00000548539 CHRM4P08173 479 aa4.43□□□□□ -1.7
VPS29-205ENST00000548539 SNHG28P0DPA3 235 aa4.43□□□□□ -1.7
VPS29-205ENST00000548539 KLRC2P26717 231 aa4.43□□□□□ -1.7
VPS29-205ENST00000548539 CYP2J2P51589 502 aa4.43□□□□□ -1.7
VPS29-205ENST00000548539 TFF2Q03403 129 aa4.43□□□□□ -1.7
VPS29-205ENST00000548539 NEXNQ0ZGT2 675 aa4.43□□□□□ -1.7
VPS29-205ENST00000548539 ERV3-1Q14264 604 aa4.43□□□□□ -1.7
VPS29-205ENST00000548539 ZNF268Q14587 947 aaPredicted RBP4.43□□□□□ -1.7
VPS29-205ENST00000548539 PGM5Q15124 567 aa4.43□□□□□ -1.7
VPS29-205ENST00000548539 SLC9B1Q4ZJI4 515 aa4.43□□□□□ -1.7
VPS29-205ENST00000548539 KIAA1755Q5JYT7 1200 aa4.43□□□□□ -1.7
VPS29-205ENST00000548539 TMTC3Q6ZXV5 915 aa4.43□□□□□ -1.7
VPS29-205ENST00000548539 CCDC25Q86WR0 208 aa4.43□□□□□ -1.7
VPS29-205ENST00000548539 ADGRF4Q8IZF3 695 aa4.43□□□□□ -1.7
VPS29-205ENST00000548539 FAM47BQ8NA70 645 aa4.43□□□□□ -1.7
VPS29-205ENST00000548539 ADAMTS15Q8TE58 950 aa4.43□□□□□ -1.7
VPS29-205ENST00000548539 MAP4K1Q92918 833 aa4.43□□□□□ -1.7
VPS29-205ENST00000548539 P2RY11Q96G91 374 aa4.43□□□□□ -1.7
VPS29-205ENST00000548539 IFT27Q9BW83 186 aa4.43□□□□□ -1.7
VPS29-205ENST00000548539 SEMA4CQ9C0C4 833 aa4.43□□□□□ -1.7
VPS29-205ENST00000548539 XRN2Q9H0D6 950 aaKnown RBP eCLIP4.43□□□□□ -1.7
VPS29-205ENST00000548539 MOV10Q9HCE1 1003 aaKnown RBP4.43□□□□□ -1.7
VPS29-205ENST00000548539 ZNF304Q9HCX3 659 aa4.43□□□□□ -1.7
VPS29-205ENST00000548539 KCND2Q9NZV8 630 aa4.43□□□□□ -1.7
VPS29-205ENST00000548539 HCN3Q9P1Z3 774 aa4.43□□□□□ -1.7
VPS29-205ENST00000548539 CTNNAL1Q9UBT7 734 aa4.43□□□□□ -1.7
VPS29-205ENST00000548539 IPO11Q9UI26 975 aaKnown RBP4.43□□□□□ -1.7
VPS29-205ENST00000548539 SCINQ9Y6U3 715 aa4.43□□□□□ -1.7
VPS29-205ENST00000548539 PI4KAP2A4QPH2 592 aa4.42□□□□□ -1.7
VPS29-205ENST00000548539 OR6C68A6NDL8 312 aa4.42□□□□□ -1.7
VPS29-205ENST00000548539 PABPN1LA6NDY0 278 aaKnown RBP4.42□□□□□ -1.7
VPS29-205ENST00000548539 SNAP23O00161 211 aa4.42□□□□□ -1.7
VPS29-205ENST00000548539 LDLRAD4O15165 306 aa4.42□□□□□ -1.7
VPS29-205ENST00000548539 INSIG1O15503 277 aa4.42□□□□□ -1.7
VPS29-205ENST00000548539 TNFSF14O43557 240 aa4.42□□□□□ -1.7
VPS29-205ENST00000548539 ZBED4O75132 1171 aa4.42□□□□□ -1.7
VPS29-205ENST00000548539 TMEM63AO94886 807 aa4.42□□□□□ -1.7
VPS29-205ENST00000548539 SGPL1O95470 568 aa4.42□□□□□ -1.7
VPS29-205ENST00000548539 COX7A2P14406 83 aa4.42□□□□□ -1.7
VPS29-205ENST00000548539 CHMP24386 653 aa4.42□□□□□ -1.7
VPS29-205ENST00000548539 STAT1P42224 750 aa4.42□□□□□ -1.7
VPS29-205ENST00000548539 SKIV2L2P42285 1042 aaKnown RBP4.42□□□□□ -1.7
VPS29-205ENST00000548539 CTCFP49711 727 aaPredicted RBP4.42□□□□□ -1.7
VPS29-205ENST00000548539 SETQ01105 290 aaPredicted RBP4.42□□□□□ -1.7
VPS29-205ENST00000548539 C5orf22Q49AR2 442 aa4.42□□□□□ -1.7
VPS29-205ENST00000548539 AADACL2Q6P093 401 aa4.42□□□□□ -1.7
VPS29-205ENST00000548539 CFAP161Q6P656 301 aa4.42□□□□□ -1.7
VPS29-205ENST00000548539 TMEM81Q6P7N7 255 aa4.42□□□□□ -1.7
VPS29-205ENST00000548539 ZNF782Q6ZMW2 699 aaPredicted RBP4.42□□□□□ -1.7
VPS29-205ENST00000548539 MOB3CQ70IA8 216 aa4.42□□□□□ -1.7
VPS29-205ENST00000548539 CYB5R4Q7L1T6 521 aa4.42□□□□□ -1.7
VPS29-205ENST00000548539 NEK8Q86SG6 692 aa4.42□□□□□ -1.7
VPS29-205ENST00000548539 CUL5Q93034 780 aa4.42□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms