RNA–Protein interactions for RNA: ENST00000546820.5

PTCH1-213, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 864 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-213ENST00000546820 BNIP3LO60238 219 aa14.02□□□□□ -0.17
PTCH1-213ENST00000546820 MAFKO60675 156 aa14.02□□□□□ -0.17
PTCH1-213ENST00000546820 SIN3BO75182 1162 aa14.02□□□□□ -0.17
PTCH1-213ENST00000546820 ACADMP11310 421 aa14.02□□□□□ -0.17
PTCH1-213ENST00000546820 COL9A1P20849 921 aa14.02□□□□□ -0.17
PTCH1-213ENST00000546820 CCNCP24863 283 aa14.02□□□□□ -0.17
PTCH1-213ENST00000546820 GARSP41250 739 aaKnown RBP14.02□□□□□ -0.17
PTCH1-213ENST00000546820 RENBPP51606 427 aa14.02□□□□□ -0.17
PTCH1-213ENST00000546820 SNRPD1P62314 119 aaKnown RBP14.02□□□□□ -0.17
PTCH1-213ENST00000546820 ZBTB16Q05516 673 aa14.02□□□□□ -0.17
PTCH1-213ENST00000546820 RAD51Q06609 339 aa14.02□□□□□ -0.17
PTCH1-213ENST00000546820 ZNF33AQ06730 810 aa14.02□□□□□ -0.17
PTCH1-213ENST00000546820 ELAVL3Q14576 367 aaKnown RBP14.02□□□□□ -0.17
PTCH1-213ENST00000546820 LLGL1Q15334 1064 aa14.02□□□□□ -0.17
PTCH1-213ENST00000546820 HS1BP3Q53T59 392 aa14.02□□□□□ -0.17
PTCH1-213ENST00000546820 CARD16Q5EG05 197 aa14.02□□□□□ -0.17
PTCH1-213ENST00000546820 SEL1L2Q5TEA6 688 aa14.02□□□□□ -0.17
PTCH1-213ENST00000546820 ANO7Q6IWH7 933 aa14.02□□□□□ -0.17
PTCH1-213ENST00000546820 KIAA1211LQ6NV74 962 aa14.02□□□□□ -0.17
PTCH1-213ENST00000546820 C22orf39Q6P5X5 142 aa14.02□□□□□ -0.17
PTCH1-213ENST00000546820 LEKR1Q6ZMV7 388 aa14.02□□□□□ -0.17
PTCH1-213ENST00000546820 BBS12Q6ZW61 710 aa14.02□□□□□ -0.17
PTCH1-213ENST00000546820 LONP2Q86WA8 852 aa14.02□□□□□ -0.17
PTCH1-213ENST00000546820 TMPRSS6Q8IU80 811 aa14.02□□□□□ -0.17
PTCH1-213ENST00000546820 MAML2Q8IZL2 1156 aaPredicted RBP14.02□□□□□ -0.17
PTCH1-213ENST00000546820 SIPA1Q96FS4 1042 aa14.02□□□□□ -0.17
PTCH1-213ENST00000546820 POLR3BQ9NW08 1133 aaPredicted RBP14.02□□□□□ -0.17
PTCH1-213ENST00000546820 DTLQ9NZJ0 730 aa14.02□□□□□ -0.17
PTCH1-213ENST00000546820 MUC3AQ02505 3323 aa14.02□□□□□ -0.17
PTCH1-213ENST00000546820 CHD5Q8TDI0 1954 aa14.02□□□□□ -0.17
PTCH1-213ENST00000546820 KCNK3O14649 394 aa14.01□□□□□ -0.17
PTCH1-213ENST00000546820 MCF2LO15068 1137 aa14.01□□□□□ -0.17
PTCH1-213ENST00000546820 AXIN1O15169 862 aa14.01□□□□□ -0.17
PTCH1-213ENST00000546820 MATN3O15232 486 aa14.01□□□□□ -0.17
PTCH1-213ENST00000546820 ZNF217O75362 1048 aa14.01□□□□□ -0.17
PTCH1-213ENST00000546820 NEBLO76041 1014 aa14.01□□□□□ -0.17
PTCH1-213ENST00000546820 TMCC1O94876 653 aa14.01□□□□□ -0.17
PTCH1-213ENST00000546820 POP4O95707 220 aaKnown RBP14.01□□□□□ -0.17
PTCH1-213ENST00000546820 CD160O95971 181 aa14.01□□□□□ -0.17
PTCH1-213ENST00000546820 DNTTP04053 509 aa14.01□□□□□ -0.17
PTCH1-213ENST00000546820 SP9P0CG40 484 aa14.01□□□□□ -0.17
PTCH1-213ENST00000546820 GABRG2P18507 467 aa14.01□□□□□ -0.17
PTCH1-213ENST00000546820 RHOAP61586 193 aa14.01□□□□□ -0.17
PTCH1-213ENST00000546820 GBE1Q04446 702 aa14.01□□□□□ -0.17
PTCH1-213ENST00000546820 SLC10A2Q12908 348 aaPredicted RBP14.01□□□□□ -0.17
PTCH1-213ENST00000546820 ZNF211Q13398 564 aaPredicted RBP14.01□□□□□ -0.17
PTCH1-213ENST00000546820 LBRQ14739 615 aaKnown RBP14.01□□□□□ -0.17
PTCH1-213ENST00000546820 USP39Q53GS9 565 aaKnown RBP14.01□□□□□ -0.17
PTCH1-213ENST00000546820 MARC1Q5VT66 337 aa14.01□□□□□ -0.17
PTCH1-213ENST00000546820 FAM46CQ5VWP2 391 aa14.01□□□□□ -0.17
PTCH1-213ENST00000546820 ZNF776Q68DI1 518 aaPredicted RBP14.01□□□□□ -0.17
PTCH1-213ENST00000546820 HEATR6Q6AI08 1181 aaKnown RBP14.01□□□□□ -0.17
PTCH1-213ENST00000546820 TSSK4Q6SA08 328 aa14.01□□□□□ -0.17
PTCH1-213ENST00000546820 Q6ZVU0 165 aa14.01□□□□□ -0.17
PTCH1-213ENST00000546820 RASSF3Q86WH2 238 aa14.01□□□□□ -0.17
PTCH1-213ENST00000546820 TP53INP2Q8IXH6 220 aa14.01□□□□□ -0.17
PTCH1-213ENST00000546820 STK40Q8N2I9 435 aa14.01□□□□□ -0.17
PTCH1-213ENST00000546820 RYBPQ8N488 228 aaPredicted RBP14.01□□□□□ -0.17
PTCH1-213ENST00000546820 TTC13Q8NBP0 860 aa14.01□□□□□ -0.17
PTCH1-213ENST00000546820 NETO2Q8NC67 525 aa14.01□□□□□ -0.17
PTCH1-213ENST00000546820 FATE1Q969F0 183 aa14.01□□□□□ -0.17
PTCH1-213ENST00000546820 HDAC11Q96DB2 347 aa14.01□□□□□ -0.17
PTCH1-213ENST00000546820 ERLEC1Q96DZ1 483 aa14.01□□□□□ -0.17
PTCH1-213ENST00000546820 MRGPRX1Q96LB2 322 aa14.01□□□□□ -0.17
PTCH1-213ENST00000546820 FAM129BQ96TA1 746 aa14.01□□□□□ -0.17
PTCH1-213ENST00000546820 FERMT1Q9BQL6 677 aa14.01□□□□□ -0.17
PTCH1-213ENST00000546820 CINPQ9BW66 212 aaPredicted RBP14.01□□□□□ -0.17
PTCH1-213ENST00000546820 RSPH9Q9H1X1 276 aaPredicted RBP14.01□□□□□ -0.17
PTCH1-213ENST00000546820 CARD9Q9H257 536 aa14.01□□□□□ -0.17
PTCH1-213ENST00000546820 TNKS2Q9H2K2 1166 aa14.01□□□□□ -0.17
PTCH1-213ENST00000546820 MTG2Q9H4K7 406 aa14.01□□□□□ -0.17
PTCH1-213ENST00000546820 PDFQ9HBH1 243 aa14.01□□□□□ -0.17
PTCH1-213ENST00000546820 KCND1Q9NSA2 647 aa14.01□□□□□ -0.17
PTCH1-213ENST00000546820 ZSCAN32Q9NX65 697 aa14.01□□□□□ -0.17
PTCH1-213ENST00000546820 SEPT3Q9UH03 358 aa14.01□□□□□ -0.17
PTCH1-213ENST00000546820 SCML1Q9UN30 329 aa14.01□□□□□ -0.17
PTCH1-213ENST00000546820 FCF1Q9Y324 198 aaKnown RBP14.01□□□□□ -0.17
PTCH1-213ENST00000546820 HCN4Q9Y3Q4 1203 aa14.01□□□□□ -0.17
PTCH1-213ENST00000546820 CACNA1IQ9P0X4 2223 aa14□□□□□ -0.17
PTCH1-213ENST00000546820 APOC4-APOC2K7ER74 178 aa14□□□□□ -0.17
PTCH1-213ENST00000546820 IGSF6O95976 241 aa14□□□□□ -0.17
PTCH1-213ENST00000546820 ADH1BP00325 375 aa14□□□□□ -0.17
PTCH1-213ENST00000546820 GSRP00390 522 aa14□□□□□ -0.17
PTCH1-213ENST00000546820 IL1BP01584 269 aa14□□□□□ -0.17
PTCH1-213ENST00000546820 APOC2P02655 101 aa14□□□□□ -0.17
PTCH1-213ENST00000546820 PRNPP04156 253 aa14□□□□□ -0.17
PTCH1-213ENST00000546820 CNR2P34972 360 aa14□□□□□ -0.17
PTCH1-213ENST00000546820 HSPA9P38646 679 aaKnown RBP14□□□□□ -0.17
PTCH1-213ENST00000546820 FNTBP49356 437 aa14□□□□□ -0.17
PTCH1-213ENST00000546820 NSUN2Q08J23 767 aaKnown RBP eCLIP14□□□□□ -0.17
PTCH1-213ENST00000546820 CCDC15Q0P6D6 951 aa14□□□□□ -0.17
PTCH1-213ENST00000546820 HNRNPDQ14103 355 aaKnown RBP14□□□□□ -0.17
PTCH1-213ENST00000546820 CYTH1Q15438 398 aa14□□□□□ -0.17
PTCH1-213ENST00000546820 KIAA1324Q6UXG2 1013 aaKnown RBP14□□□□□ -0.17
PTCH1-213ENST00000546820 NPNTQ6UXI9 565 aa14□□□□□ -0.17
PTCH1-213ENST00000546820 ARHGAP36Q6ZRI8 547 aa14□□□□□ -0.17
PTCH1-213ENST00000546820 WDR5BQ86VZ2 330 aa14□□□□□ -0.17
PTCH1-213ENST00000546820 CCDC13Q8IYE1 715 aa14□□□□□ -0.17
PTCH1-213ENST00000546820 OR2AP1Q8NGE2 309 aa14□□□□□ -0.17
PTCH1-213ENST00000546820 LRIG1Q96JA1 1093 aa14□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms