RNA–Protein interactions for RNA: ENST00000546744.5

PTCH1-212, Transcript of patched 1, humanhuman

TSL 2

Gene PTCH1, Length 4,389 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-212ENST00000546744 KCNH1O95259 989 aa12.97□□□□□ -0.33
PTCH1-212ENST00000546744 MLYCDO95822 493 aa12.97□□□□□ -0.33
PTCH1-212ENST00000546744 GMFBP60983 142 aa12.97□□□□□ -0.33
PTCH1-212ENST00000546744 LGALS3BPQ08380 585 aa12.97□□□□□ -0.33
PTCH1-212ENST00000546744 LPCAT4Q643R3 524 aa12.97□□□□□ -0.33
PTCH1-212ENST00000546744 C16orf46Q6P387 395 aa12.97□□□□□ -0.33
PTCH1-212ENST00000546744 HIPK1Q86Z02 1210 aa12.97□□□□□ -0.33
PTCH1-212ENST00000546744 MAGEB10Q96LZ2 347 aaPredicted RBP12.97□□□□□ -0.33
PTCH1-212ENST00000546744 PIGUQ9H490 435 aa12.97□□□□□ -0.33
PTCH1-212ENST00000546744 MKL2Q9ULH7 1088 aa12.97□□□□□ -0.33
PTCH1-212ENST00000546744 ERGIC3Q9Y282 383 aa12.97□□□□□ -0.33
PTCH1-212ENST00000546744 UBE2QL1A1L167 161 aa12.96□□□□□ -0.33
PTCH1-212ENST00000546744 EPHB6O15197 1021 aa12.96□□□□□ -0.33
PTCH1-212ENST00000546744 RGS14O43566 566 aa12.96□□□□□ -0.33
PTCH1-212ENST00000546744 TIE1P35590 1138 aa12.96□□□□□ -0.33
PTCH1-212ENST00000546744 CAPGP40121 348 aa12.96□□□□□ -0.33
PTCH1-212ENST00000546744 SLC12A3P55017 1021 aa12.96□□□□□ -0.33
PTCH1-212ENST00000546744 DGCR6Q14129 220 aa12.96□□□□□ -0.33
PTCH1-212ENST00000546744 TYW3Q6IPR3 259 aaKnown RBP12.96□□□□□ -0.33
PTCH1-212ENST00000546744 FNDC5Q8NAU1 212 aa12.96□□□□□ -0.33
PTCH1-212ENST00000546744 BPIFB6Q8NFQ5 453 aa12.96□□□□□ -0.33
PTCH1-212ENST00000546744 ALG3Q92685 438 aa12.96□□□□□ -0.33
PTCH1-212ENST00000546744 TAMM41Q96BW9 452 aa12.96□□□□□ -0.33
PTCH1-212ENST00000546744 TSEN34Q9BSV6 310 aaKnown RBP12.96□□□□□ -0.33
PTCH1-212ENST00000546744 WDCPQ9H6R7 721 aa12.96□□□□□ -0.33
PTCH1-212ENST00000546744 MID1IP1Q9NPA3 183 aa12.96□□□□□ -0.33
PTCH1-212ENST00000546744 ARHGAP28Q9P2N2 729 aa12.96□□□□□ -0.33
PTCH1-212ENST00000546744 M0QYT0 321 aa12.96□□□□□ -0.33
PTCH1-212ENST00000546744 IFRD1O00458 451 aaPredicted RBP12.96□□□□□ -0.33
PTCH1-212ENST00000546744 SLC22A1O15245 554 aa12.96□□□□□ -0.33
PTCH1-212ENST00000546744 NRP2O60462 931 aa12.96□□□□□ -0.33
PTCH1-212ENST00000546744 PMPCBO75439 489 aa12.96□□□□□ -0.33
PTCH1-212ENST00000546744 SMIM11AP58511 58 aa12.96□□□□□ -0.33
PTCH1-212ENST00000546744 GPSM2P81274 684 aa12.96□□□□□ -0.33
PTCH1-212ENST00000546744 SCN1BQ07699 218 aa12.96□□□□□ -0.33
PTCH1-212ENST00000546744 FSCN1Q16658 493 aaKnown RBP12.96□□□□□ -0.33
PTCH1-212ENST00000546744 ELMSAN1Q6PJG2 1045 aa12.96□□□□□ -0.33
PTCH1-212ENST00000546744 EIF3MQ7L2H7 374 aaKnown RBP12.96□□□□□ -0.33
PTCH1-212ENST00000546744 ZNF540Q8NDQ6 660 aa12.96□□□□□ -0.33
PTCH1-212ENST00000546744 TMEM143Q96AN5 459 aa12.96□□□□□ -0.33
PTCH1-212ENST00000546744 ACSF2Q96CM8 615 aaPredicted RBP12.96□□□□□ -0.33
PTCH1-212ENST00000546744 DNAJC19Q96DA6 116 aa12.96□□□□□ -0.33
PTCH1-212ENST00000546744 NOL11Q9H8H0 719 aaKnown RBP12.96□□□□□ -0.33
PTCH1-212ENST00000546744 ZFYVE28Q9HCC9 887 aa12.96□□□□□ -0.33
PTCH1-212ENST00000546744 IGSF9Q9P2J2 1179 aa12.96□□□□□ -0.33
PTCH1-212ENST00000546744 PRKAG3Q9UGI9 489 aa12.96□□□□□ -0.33
PTCH1-212ENST00000546744 TCRBV9S1A1TA0A576 114 aa12.96□□□□□ -0.34
PTCH1-212ENST00000546744 TULP3O75386 442 aa12.96□□□□□ -0.34
PTCH1-212ENST00000546744 PPP2R1BP30154 601 aa12.96□□□□□ -0.34
PTCH1-212ENST00000546744 FOXD4Q12950 439 aaPredicted RBP12.96□□□□□ -0.34
PTCH1-212ENST00000546744 HERC3Q15034 1050 aa12.96□□□□□ -0.34
PTCH1-212ENST00000546744 HYIQ5T013 277 aa12.96□□□□□ -0.34
PTCH1-212ENST00000546744 SYCE2Q6PIF2 218 aa12.96□□□□□ -0.34
PTCH1-212ENST00000546744 MPZL3Q6UWV2 235 aa12.96□□□□□ -0.34
PTCH1-212ENST00000546744 RINLQ6ZS11 566 aa12.96□□□□□ -0.34
PTCH1-212ENST00000546744 ALYREFQ86V81 257 aaKnown RBP12.96□□□□□ -0.34
PTCH1-212ENST00000546744 DPP10Q8N608 796 aa12.96□□□□□ -0.34
PTCH1-212ENST00000546744 VGLL2Q8N8G2 317 aa12.96□□□□□ -0.34
PTCH1-212ENST00000546744 ZNF570Q96NI8 536 aa12.96□□□□□ -0.34
PTCH1-212ENST00000546744 LRRC4CQ9HCJ2 640 aa12.96□□□□□ -0.34
PTCH1-212ENST00000546744 CLN6Q9NWW5 311 aa12.96□□□□□ -0.34
PTCH1-212ENST00000546744 AFF4Q9UHB7 1163 aaKnown RBP12.96□□□□□ -0.34
PTCH1-212ENST00000546744 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP12.96□□□□□ -0.34
PTCH1-212ENST00000546744 BCS1LQ9Y276 419 aa12.96□□□□□ -0.34
PTCH1-212ENST00000546744 hCG_1818297A0A087WSY0 165 aa12.95□□□□□ -0.34
PTCH1-212ENST00000546744 WDR27A2RRH5 827 aa12.95□□□□□ -0.34
PTCH1-212ENST00000546744 UBE2Q2LH0YL09 131 aa12.95□□□□□ -0.34
PTCH1-212ENST00000546744 LTA4HP09960 611 aaKnown RBP12.95□□□□□ -0.34
PTCH1-212ENST00000546744 MGAT1P26572 445 aa12.95□□□□□ -0.34
PTCH1-212ENST00000546744 TAF6P49848 677 aa12.95□□□□□ -0.34
PTCH1-212ENST00000546744 EARS2Q5JPH6 523 aaKnown RBP12.95□□□□□ -0.34
PTCH1-212ENST00000546744 KHDRBS2Q5VWX1 349 aaKnown RBP12.95□□□□□ -0.34
PTCH1-212ENST00000546744 GALNT18Q6P9A2 607 aa12.95□□□□□ -0.34
PTCH1-212ENST00000546744 MAP4K3Q8IVH8 894 aa12.95□□□□□ -0.34
PTCH1-212ENST00000546744 MICALL2Q8IY33 904 aa12.95□□□□□ -0.34
PTCH1-212ENST00000546744 ANKRD52Q8NB46 1076 aa12.95□□□□□ -0.34
PTCH1-212ENST00000546744 FAM49AQ9H0Q0 323 aaPredicted RBP12.95□□□□□ -0.34
PTCH1-212ENST00000546744 PREBQ9HCU5 417 aa12.95□□□□□ -0.34
PTCH1-212ENST00000546744 ERAP1Q9NZ08 941 aa12.95□□□□□ -0.34
PTCH1-212ENST00000546744 IFT80Q9P2H3 777 aaPredicted RBP12.95□□□□□ -0.34
PTCH1-212ENST00000546744 PCDHGA10Q9Y5H3 936 aa12.95□□□□□ -0.34
PTCH1-212ENST00000546744 ATRNO75882 1429 aa12.95□□□□□ -0.34
PTCH1-212ENST00000546744 CSPG5O95196 566 aa12.95□□□□□ -0.34
PTCH1-212ENST00000546744 PABPC4LP0CB38 370 aaKnown RBP12.95□□□□□ -0.34
PTCH1-212ENST00000546744 ALOX15P16050 662 aaPredicted RBP12.95□□□□□ -0.34
PTCH1-212ENST00000546744 GNL1P36915 607 aaPredicted RBP12.95□□□□□ -0.34
PTCH1-212ENST00000546744 ADAM17P78536 824 aa12.95□□□□□ -0.34
PTCH1-212ENST00000546744 UBAP2LQ14157 1087 aaKnown RBP12.95□□□□□ -0.34
PTCH1-212ENST00000546744 SYTL3Q4VX76 610 aa12.95□□□□□ -0.34
PTCH1-212ENST00000546744 NCCRP1Q6ZVX7 275 aaPredicted RBP12.95□□□□□ -0.34
PTCH1-212ENST00000546744 ATP6V0D2Q8N8Y2 350 aa12.95□□□□□ -0.34
PTCH1-212ENST00000546744 SMYD1Q8NB12 490 aa12.95□□□□□ -0.34
PTCH1-212ENST00000546744 C10orf82Q8WW14 230 aa12.95□□□□□ -0.34
PTCH1-212ENST00000546744 SH3KBP1Q96B97 665 aa12.95□□□□□ -0.34
PTCH1-212ENST00000546744 RBM4BQ9BQ04 359 aaKnown RBP12.95□□□□□ -0.34
PTCH1-212ENST00000546744 ZNF670Q9BS34 389 aa12.95□□□□□ -0.34
PTCH1-212ENST00000546744 RBM4Q9BWF3 364 aaKnown RBP12.95□□□□□ -0.34
PTCH1-212ENST00000546744 ELOVL6Q9H5J4 265 aa12.95□□□□□ -0.34
PTCH1-212ENST00000546744 POMKQ9H5K3 350 aa12.95□□□□□ -0.34
PTCH1-212ENST00000546744 PRDM8Q9NQV8 689 aa12.95□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms