RNA–Protein interactions for RNA: ENST00000545856.5

PRPF40A-212, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,358 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-212ENST00000545856 POLR1EQ9GZS1 481 aaKnown RBP16.31■□□□□ 0.2
PRPF40A-212ENST00000545856 VPS45Q9NRW7 570 aa16.31■□□□□ 0.2
PRPF40A-212ENST00000545856 ELOVL2Q9NXB9 296 aa16.31■□□□□ 0.2
PRPF40A-212ENST00000545856 INTS6Q9UL03 887 aaKnown RBP16.31■□□□□ 0.2
PRPF40A-212ENST00000545856 CLEC4EQ9ULY5 219 aa16.31■□□□□ 0.2
PRPF40A-212ENST00000545856 ATP8A1Q9Y2Q0 1164 aa16.31■□□□□ 0.2
PRPF40A-212ENST00000545856 PIAS3Q9Y6X2 628 aa16.31■□□□□ 0.2
PRPF40A-212ENST00000545856 PSMD3O43242 534 aa16.3■□□□□ 0.2
PRPF40A-212ENST00000545856 RAD51CO43502 376 aa16.3■□□□□ 0.2
PRPF40A-212ENST00000545856 MAP3K6O95382 1288 aa16.3■□□□□ 0.2
PRPF40A-212ENST00000545856 KRT14P02533 472 aa16.3■□□□□ 0.2
PRPF40A-212ENST00000545856 KCNJ1P48048 391 aa16.3■□□□□ 0.2
PRPF40A-212ENST00000545856 CDK16Q00536 496 aa16.3■□□□□ 0.2
PRPF40A-212ENST00000545856 GRM3Q14832 879 aa16.3■□□□□ 0.2
PRPF40A-212ENST00000545856 PARP6Q2NL67 630 aa16.3■□□□□ 0.2
PRPF40A-212ENST00000545856 HSF5Q4G112 596 aaPredicted RBP16.3■□□□□ 0.2
PRPF40A-212ENST00000545856 ANKRD20A2Q5SQ80 823 aa16.3■□□□□ 0.2
PRPF40A-212ENST00000545856 ANKRD20A1Q5TYW2 823 aa16.3■□□□□ 0.2
PRPF40A-212ENST00000545856 ANKRD20A3Q5VUR7 823 aa16.3■□□□□ 0.2
PRPF40A-212ENST00000545856 ASTLQ6HA08 431 aaPredicted RBP16.3■□□□□ 0.2
PRPF40A-212ENST00000545856 TP53INP2Q8IXH6 220 aa16.3■□□□□ 0.2
PRPF40A-212ENST00000545856 KLHDC8BQ8IXV7 354 aa16.3■□□□□ 0.2
PRPF40A-212ENST00000545856 PCDH20Q8N6Y1 951 aaKnown RBP16.3■□□□□ 0.2
PRPF40A-212ENST00000545856 NOA1Q8NC60 698 aaKnown RBP16.3■□□□□ 0.2
PRPF40A-212ENST00000545856 SHDQ96IW2 340 aa16.3■□□□□ 0.2
PRPF40A-212ENST00000545856 MGME1Q9BQP7 344 aa16.3■□□□□ 0.2
PRPF40A-212ENST00000545856 CINPQ9BW66 212 aaPredicted RBP16.3■□□□□ 0.2
PRPF40A-212ENST00000545856 FRMD8Q9BZ67 464 aaPredicted RBP16.3■□□□□ 0.2
PRPF40A-212ENST00000545856 GBA3Q9H227 469 aa16.3■□□□□ 0.2
PRPF40A-212ENST00000545856 KLHL8Q9P2G9 620 aaPredicted RBP16.3■□□□□ 0.2
PRPF40A-212ENST00000545856 WNT16Q9UBV4 365 aa16.3■□□□□ 0.2
PRPF40A-212ENST00000545856 PLA2G4CQ9UP65 541 aa16.3■□□□□ 0.2
PRPF40A-212ENST00000545856 CKAP5Q14008 2032 aa16.29■□□□□ 0.2
PRPF40A-212ENST00000545856 J3KR12 359 aa16.29■□□□□ 0.2
PRPF40A-212ENST00000545856 KCNK1O00180 336 aa16.29■□□□□ 0.2
PRPF40A-212ENST00000545856 TTI1O43156 1089 aa16.29■□□□□ 0.2
PRPF40A-212ENST00000545856 ATP9BO43861 1147 aa16.29■□□□□ 0.2
PRPF40A-212ENST00000545856 ANXA9O76027 345 aa16.29■□□□□ 0.2
PRPF40A-212ENST00000545856 GSRP00390 522 aa16.29■□□□□ 0.2
PRPF40A-212ENST00000545856 IFNB1P01574 187 aa16.29■□□□□ 0.2
PRPF40A-212ENST00000545856 BMP1P13497 986 aa16.29■□□□□ 0.2
PRPF40A-212ENST00000545856 HNRNPLP14866 589 aaKnown RBP eCLIP16.29■□□□□ 0.2
PRPF40A-212ENST00000545856 MAGEA6P43360 314 aa16.29■□□□□ 0.2
PRPF40A-212ENST00000545856 ST8SIA6P61647 398 aa16.29■□□□□ 0.2
PRPF40A-212ENST00000545856 CAV1Q03135 178 aa16.29■□□□□ 0.2
PRPF40A-212ENST00000545856 GEN1Q17RS7 908 aa16.29■□□□□ 0.2
PRPF40A-212ENST00000545856 ARMC3Q5W041 872 aa16.29■□□□□ 0.2
PRPF40A-212ENST00000545856 TRMT11Q7Z4G4 463 aaKnown RBP16.29■□□□□ 0.2
PRPF40A-212ENST00000545856 HOOK3Q86VS8 718 aa16.29■□□□□ 0.2
PRPF40A-212ENST00000545856 C12orf40Q86WS4 652 aa16.29■□□□□ 0.2
PRPF40A-212ENST00000545856 APCDD1Q8J025 514 aa16.29■□□□□ 0.2
PRPF40A-212ENST00000545856 ZNF567Q8N184 647 aa16.29■□□□□ 0.2
PRPF40A-212ENST00000545856 SYNPOQ8N3V7 929 aa16.29■□□□□ 0.2
PRPF40A-212ENST00000545856 SH2D3CQ8N5H7 860 aa16.29■□□□□ 0.2
PRPF40A-212ENST00000545856 NAT16Q8N8M0 369 aa16.29■□□□□ 0.2
PRPF40A-212ENST00000545856 FCRL5Q96RD9 977 aa16.29■□□□□ 0.2
PRPF40A-212ENST00000545856 FAM118BQ9BPY3 351 aa16.29■□□□□ 0.2
PRPF40A-212ENST00000545856 SLC25A51Q9H1U9 297 aa16.29■□□□□ 0.2
PRPF40A-212ENST00000545856 EIF2B3Q9NR50 452 aaKnown RBP16.29■□□□□ 0.2
PRPF40A-212ENST00000545856 FAM114A2Q9NRY5 505 aa16.29■□□□□ 0.2
PRPF40A-212ENST00000545856 RBM22Q9NW64 420 aaKnown RBP eCLIP16.29■□□□□ 0.21e-9■■■■■ 40.4
PRPF40A-212ENST00000545856 MRPS17Q9Y2R5 130 aaKnown RBP16.29■□□□□ 0.2
PRPF40A-212ENST00000545856 AAR2Q9Y312 384 aaKnown RBP16.29■□□□□ 0.2
PRPF40A-212ENST00000545856 AP3B1O00203 1094 aa16.28■□□□□ 0.2
PRPF40A-212ENST00000545856 JCHAINP01591 159 aa16.28■□□□□ 0.2
PRPF40A-212ENST00000545856 ITIH2P19823 946 aa16.28■□□□□ 0.2
PRPF40A-212ENST00000545856 CA4P22748 312 aa16.28■□□□□ 0.2
PRPF40A-212ENST00000545856 GDF10P55107 478 aa16.28■□□□□ 0.2
PRPF40A-212ENST00000545856 AP1S1P61966 158 aa16.28■□□□□ 0.2
PRPF40A-212ENST00000545856 GRSF1Q12849 480 aaKnown RBP eCLIP16.28■□□□□ 0.2
PRPF40A-212ENST00000545856 CUL1Q13616 776 aa16.28■□□□□ 0.2
PRPF40A-212ENST00000545856 PRPSAP1Q14558 356 aa16.28■□□□□ 0.2
PRPF40A-212ENST00000545856 TMEM196Q5HYL7 178 aa16.28■□□□□ 0.2
PRPF40A-212ENST00000545856 ARHGAP36Q6ZRI8 547 aa16.28■□□□□ 0.2
PRPF40A-212ENST00000545856 CHFRQ96EP1 664 aa16.28■□□□□ 0.2
PRPF40A-212ENST00000545856 SNF8Q96H20 258 aa16.28■□□□□ 0.2
PRPF40A-212ENST00000545856 TSPYL1Q9H0U9 437 aa16.28■□□□□ 0.2
PRPF40A-212ENST00000545856 PRDM6Q9NQX0 595 aa16.28■□□□□ 0.2
PRPF40A-212ENST00000545856 WHRNQ9P202 907 aa16.28■□□□□ 0.2
PRPF40A-212ENST00000545856 ASIC3Q9UHC3 531 aa16.28■□□□□ 0.2
PRPF40A-212ENST00000545856 ERVW-1Q9UQF0 538 aa16.28■□□□□ 0.2
PRPF40A-212ENST00000545856 ANKRD36A6QL64 1941 aa16.28■□□□□ 0.2
PRPF40A-212ENST00000545856 BDP1A6H8Y1 2624 aa16.28■□□□□ 0.2
PRPF40A-212ENST00000545856 A0A1W2PQ67 120 aa16.27■□□□□ 0.2
PRPF40A-212ENST00000545856 TBC1D3BA6NDS4 549 aa16.27■□□□□ 0.2
PRPF40A-212ENST00000545856 BHMG1C9JSJ3 638 aaPredicted RBP16.27■□□□□ 0.2
PRPF40A-212ENST00000545856 SNAP91O60641 907 aa16.27■□□□□ 0.2
PRPF40A-212ENST00000545856 TMCC1O94876 653 aa16.27■□□□□ 0.2
PRPF40A-212ENST00000545856 HEXIM1O94992 359 aaKnown RBP16.27■□□□□ 0.2
PRPF40A-212ENST00000545856 CD160O95971 181 aa16.27■□□□□ 0.2
PRPF40A-212ENST00000545856 IGSF6O95976 241 aa16.27■□□□□ 0.2
PRPF40A-212ENST00000545856 ASGR2P07307 311 aa16.27■□□□□ 0.2
PRPF40A-212ENST00000545856 TNFRSF8P28908 595 aa16.27■□□□□ 0.2
PRPF40A-212ENST00000545856 SNRPD1P62314 119 aaKnown RBP16.27■□□□□ 0.2
PRPF40A-212ENST00000545856 SLC10A7Q0GE19 358 aa16.27■□□□□ 0.2
PRPF40A-212ENST00000545856 ZBTB17Q13105 803 aa16.27■□□□□ 0.2
PRPF40A-212ENST00000545856 CALCOCO2Q13137 446 aa16.27■□□□□ 0.2
PRPF40A-212ENST00000545856 SEMA5AQ13591 1074 aa16.27■□□□□ 0.2
PRPF40A-212ENST00000545856 MLF2Q15773 248 aaPredicted RBP16.27■□□□□ 0.2
PRPF40A-212ENST00000545856 DUPD1Q68J44 220 aa16.27■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms