RNA–Protein interactions for RNA: ENST00000545689.2

COL4A6-209, Transcript of collagen type IV alpha 6 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A6, Length 6,380 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A6-209ENST00000545689 TTPAP49638 278 aa12.68□□□□□ -0.38
COL4A6-209ENST00000545689 MRPS5P82675 430 aaKnown RBP12.68□□□□□ -0.38
COL4A6-209ENST00000545689 PABPC1LQ4VXU2 614 aaKnown RBP12.68□□□□□ -0.38
COL4A6-209ENST00000545689 ABHD15Q6UXT9 468 aa12.68□□□□□ -0.38
COL4A6-209ENST00000545689 UNC5AQ6ZN44 842 aa12.68□□□□□ -0.38
COL4A6-209ENST00000545689 ZDHHC13Q8IUH4 622 aa12.68□□□□□ -0.38
COL4A6-209ENST00000545689 IL31RAQ8NI17 732 aa12.68□□□□□ -0.38
COL4A6-209ENST00000545689 ZCWPW1Q9H0M4 648 aa12.68□□□□□ -0.38
COL4A6-209ENST00000545689 DHX33Q9H6R0 707 aaKnown RBP12.68□□□□□ -0.38
COL4A6-209ENST00000545689 LIMD1Q9UGP4 676 aa12.68□□□□□ -0.38
COL4A6-209ENST00000545689 DUSP12Q9UNI6 340 aa12.68□□□□□ -0.38
COL4A6-209ENST00000545689 HDAC3O15379 428 aa12.68□□□□□ -0.38
COL4A6-209ENST00000545689 PEX1O43933 1283 aa12.68□□□□□ -0.38
COL4A6-209ENST00000545689 HTR7P34969 479 aa12.68□□□□□ -0.38
COL4A6-209ENST00000545689 TNFSF9P41273 254 aa12.68□□□□□ -0.38
COL4A6-209ENST00000545689 ATP6V0D1P61421 351 aa12.68□□□□□ -0.38
COL4A6-209ENST00000545689 PAGE2BQ5JRK9 111 aa12.68□□□□□ -0.38
COL4A6-209ENST00000545689 C16orf46Q6P387 395 aa12.68□□□□□ -0.38
COL4A6-209ENST00000545689 DHDDSQ86SQ9 333 aa12.68□□□□□ -0.38
COL4A6-209ENST00000545689 PIGZQ86VD9 579 aa12.68□□□□□ -0.38
COL4A6-209ENST00000545689 SLC41A1Q8IVJ1 513 aa12.68□□□□□ -0.38
COL4A6-209ENST00000545689 MAGEC3Q8TD91 643 aa12.68□□□□□ -0.38
COL4A6-209ENST00000545689 ALG3Q92685 438 aa12.68□□□□□ -0.38
COL4A6-209ENST00000545689 PTCD3Q96EY7 689 aaKnown RBP12.68□□□□□ -0.38
COL4A6-209ENST00000545689 YME1L1Q96TA2 773 aa12.68□□□□□ -0.38
COL4A6-209ENST00000545689 SLC39A8Q9C0K1 460 aa12.68□□□□□ -0.38
COL4A6-209ENST00000545689 SPAG4Q9NPE6 437 aa12.68□□□□□ -0.38
COL4A6-209ENST00000545689 RPS6KB2Q9UBS0 482 aa12.68□□□□□ -0.38
COL4A6-209ENST00000545689 ABCC6O95255 1503 aa12.68□□□□□ -0.38
COL4A6-209ENST00000545689 LIN7AO14910 233 aaPredicted RBP12.68□□□□□ -0.38
COL4A6-209ENST00000545689 NOL4O94818 638 aa12.68□□□□□ -0.38
COL4A6-209ENST00000545689 MMP8P22894 467 aa12.68□□□□□ -0.38
COL4A6-209ENST00000545689 CRYBB1P53674 252 aaPredicted RBP12.68□□□□□ -0.38
COL4A6-209ENST00000545689 TNK2Q07912 1038 aa12.68□□□□□ -0.38
COL4A6-209ENST00000545689 UGCGQ16739 394 aa12.68□□□□□ -0.38
COL4A6-209ENST00000545689 LACTB2Q53H82 288 aaPredicted RBP12.68□□□□□ -0.38
COL4A6-209ENST00000545689 POTEHQ6S545 545 aa12.68□□□□□ -0.38
COL4A6-209ENST00000545689 ZNF438Q7Z4V0 828 aa12.68□□□□□ -0.38
COL4A6-209ENST00000545689 PRCCQ92733 491 aaPredicted RBP12.68□□□□□ -0.38
COL4A6-209ENST00000545689 BHMTQ93088 406 aa12.68□□□□□ -0.38
COL4A6-209ENST00000545689 MPP4Q96JB8 637 aa12.68□□□□□ -0.38
COL4A6-209ENST00000545689 RNF145Q96MT1 663 aa12.68□□□□□ -0.38
COL4A6-209ENST00000545689 TTYH3Q9C0H2 523 aa12.68□□□□□ -0.38
COL4A6-209ENST00000545689 BTBD7Q9P203 1132 aa12.68□□□□□ -0.38
COL4A6-209ENST00000545689 SAE1Q9UBE0 346 aaPredicted RBP12.68□□□□□ -0.38
COL4A6-209ENST00000545689 PCDHGC3Q9UN70 934 aa12.68□□□□□ -0.38
COL4A6-209ENST00000545689 CORO2BQ9UQ03 480 aa12.68□□□□□ -0.38
COL4A6-209ENST00000545689 GIT1Q9Y2X7 761 aa12.68□□□□□ -0.38
COL4A6-209ENST00000545689 SIPA1L2Q9P2F8 1722 aaPredicted RBP12.68□□□□□ -0.38
COL4A6-209ENST00000545689 PBLDP30039 288 aaPredicted RBP12.68□□□□□ -0.38
COL4A6-209ENST00000545689 DGUOKQ16854 277 aa12.68□□□□□ -0.38
COL4A6-209ENST00000545689 TRPC4APQ8TEL6 797 aa12.68□□□□□ -0.38
COL4A6-209ENST00000545689 RORBQ92753 470 aa12.68□□□□□ -0.38
COL4A6-209ENST00000545689 ZBTB10Q96DT7 871 aa12.68□□□□□ -0.38
COL4A6-209ENST00000545689 KREMEN1Q96MU8 473 aa12.68□□□□□ -0.38
COL4A6-209ENST00000545689 QRFPRQ96P65 431 aa12.68□□□□□ -0.38
COL4A6-209ENST00000545689 ACP6Q9NPH0 428 aa12.68□□□□□ -0.38
COL4A6-209ENST00000545689 TSC22D4Q9Y3Q8 395 aa12.68□□□□□ -0.38
COL4A6-209ENST00000545689 ZBTB14O43829 449 aa12.68□□□□□ -0.38
COL4A6-209ENST00000545689 ATP5C1P36542 298 aaKnown RBP12.68□□□□□ -0.38
COL4A6-209ENST00000545689 GRIA4P48058 902 aa12.68□□□□□ -0.38
COL4A6-209ENST00000545689 UBE3AQ05086 875 aa12.68□□□□□ -0.38
COL4A6-209ENST00000545689 ZNF544Q6NX49 715 aa12.68□□□□□ -0.38
COL4A6-209ENST00000545689 PPP3R2Q96LZ3 170 aa12.68□□□□□ -0.38
COL4A6-209ENST00000545689 DUSP16Q9BY84 665 aa12.68□□□□□ -0.38
COL4A6-209ENST00000545689 PIH1D1Q9NWS0 290 aaKnown RBP12.68□□□□□ -0.38
COL4A6-209ENST00000545689 PARP4Q9UKK3 1724 aaKnown RBP12.67□□□□□ -0.38
COL4A6-209ENST00000545689 SHOX2O60902 331 aaPredicted RBP12.67□□□□□ -0.38
COL4A6-209ENST00000545689 GRIK3Q13003 919 aa12.67□□□□□ -0.38
COL4A6-209ENST00000545689 DSG4Q86SJ6 1040 aa12.67□□□□□ -0.38
COL4A6-209ENST00000545689 KIAA0319LQ8IZA0 1049 aa12.67□□□□□ -0.38
COL4A6-209ENST00000545689 ATL1Q8WXF7 558 aa12.67□□□□□ -0.38
COL4A6-209ENST00000545689 USP6NLQ92738 828 aa12.67□□□□□ -0.38
COL4A6-209ENST00000545689 PCDHB18PQ96TA0 734 aa12.67□□□□□ -0.38
COL4A6-209ENST00000545689 CYLDQ9NQC7 956 aa12.67□□□□□ -0.38
COL4A6-209ENST00000545689 SNX6Q9UNH7 406 aa12.67□□□□□ -0.38
COL4A6-209ENST00000545689 TCRBV9S1A1TA0A576 114 aa12.67□□□□□ -0.38
COL4A6-209ENST00000545689 EPB42P16452 691 aa12.67□□□□□ -0.38
COL4A6-209ENST00000545689 IFNGR2P38484 337 aa12.67□□□□□ -0.38
COL4A6-209ENST00000545689 ATP13A4Q4VNC1 1196 aa12.67□□□□□ -0.38
COL4A6-209ENST00000545689 IL27RAQ6UWB1 636 aa12.67□□□□□ -0.38
COL4A6-209ENST00000545689 TSHZ1Q6ZSZ6 1077 aa12.67□□□□□ -0.38
COL4A6-209ENST00000545689 MON1BQ7L1V2 547 aa12.67□□□□□ -0.38
COL4A6-209ENST00000545689 ZNF276Q8N554 614 aa12.67□□□□□ -0.38
COL4A6-209ENST00000545689 LRRC57Q8N9N7 239 aa12.67□□□□□ -0.38
COL4A6-209ENST00000545689 UBE2E3Q969T4 207 aa12.67□□□□□ -0.38
COL4A6-209ENST00000545689 PIK3C2AO00443 1686 aa12.67□□□□□ -0.38
COL4A6-209ENST00000545689 SLC28A1O00337 649 aa12.67□□□□□ -0.38
COL4A6-209ENST00000545689 QSOX1O00391 747 aa12.67□□□□□ -0.38
COL4A6-209ENST00000545689 ABLIM1O14639 778 aa12.67□□□□□ -0.38
COL4A6-209ENST00000545689 MAGEA10P43363 369 aaPredicted RBP12.67□□□□□ -0.38
COL4A6-209ENST00000545689 TTC27Q6P3X3 843 aa12.67□□□□□ -0.38
COL4A6-209ENST00000545689 NKD2Q969F2 451 aaPredicted RBP12.67□□□□□ -0.38
COL4A6-209ENST00000545689 TRMOQ9BU70 441 aa12.67□□□□□ -0.38
COL4A6-209ENST00000545689 C8orf4Q9NR00 106 aa12.67□□□□□ -0.38
COL4A6-209ENST00000545689 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP12.67□□□□□ -0.38
COL4A6-209ENST00000545689 DNMT3LQ9UJW3 386 aa12.67□□□□□ -0.38
COL4A6-209ENST00000545689 PNMA8CA0A1B0GUJ8 204 aa12.67□□□□□ -0.38
COL4A6-209ENST00000545689 BBIP1A8MTZ0 92 aa12.67□□□□□ -0.38
COL4A6-209ENST00000545689 ADM5C9JUS6 153 aa12.67□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms