RNA–Protein interactions for RNA: ENST00000545440.5

SNHG1-223, Transcript of small nucleolar RNA host gene 1, human

TSL 2 BASIC

Gene SNHG1, Length 754 nt, Biotype lincRNA, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SNHG1-223	ENST00000545440	FIBIN	Q8TAL6	211 aa		7.93	□□□□□ -1.14
SNHG1-223	ENST00000545440	WFDC5	Q8TCV5	224 aa		7.93	□□□□□ -1.14
SNHG1-223	ENST00000545440	DDX1	Q92499	740 aa	Known RBP	7.93	□□□□□ -1.14
SNHG1-223	ENST00000545440	TCEAL3	Q969E4	200 aa		7.93	□□□□□ -1.14
SNHG1-223	ENST00000545440	LMLN	Q96KR4	655 aa		7.93	□□□□□ -1.14
SNHG1-223	ENST00000545440	EDEM2	Q9BV94	578 aa		7.93	□□□□□ -1.14
SNHG1-223	ENST00000545440	STK33	Q9BYT3	514 aa		7.93	□□□□□ -1.14
SNHG1-223	ENST00000545440	MKRN2	Q9H000	416 aa	Known RBP	7.93	□□□□□ -1.14
SNHG1-223	ENST00000545440	GAN	Q9H2C0	597 aa		7.93	□□□□□ -1.14
SNHG1-223	ENST00000545440	TMEM245	Q9H330	911 aa		7.93	□□□□□ -1.14
SNHG1-223	ENST00000545440	PRDM16	Q9HAZ2	1276 aa		7.93	□□□□□ -1.14
SNHG1-223	ENST00000545440	FANCL	Q9NW38	375 aa		7.93	□□□□□ -1.14
SNHG1-223	ENST00000545440	TMEM51	Q9NW97	253 aa		7.93	□□□□□ -1.14
SNHG1-223	ENST00000545440	SLTM	Q9NWH9	1034 aa	Known RBP eCLIP	7.93	□□□□□ -1.14
SNHG1-223	ENST00000545440	DDIT4	Q9NX09	232 aa		7.93	□□□□□ -1.14
SNHG1-223	ENST00000545440	RRN3	Q9NYV6	651 aa		7.93	□□□□□ -1.14
SNHG1-223	ENST00000545440	USP36	Q9P275	1121 aa	Known RBP	7.93	□□□□□ -1.14
SNHG1-223	ENST00000545440	EVL	Q9UI08	416 aa	Predicted RBP	7.93	□□□□□ -1.14
SNHG1-223	ENST00000545440	STAP1	Q9ULZ2	295 aa		7.93	□□□□□ -1.14
SNHG1-223	ENST00000545440	KNL1	Q8NG31	2342 aa		7.92	□□□□□ -1.14
SNHG1-223	ENST00000545440	NCOR2	Q9Y618	2525 aa		7.92	□□□□□ -1.14
SNHG1-223	ENST00000545440	TRPM6	Q9BX84	2022 aa		7.92	□□□□□ -1.14
SNHG1-223	ENST00000545440	MSANTD3-TMEFF1	A0A0A6YYJ0	341 aa		7.92	□□□□□ -1.14
SNHG1-223	ENST00000545440	GOLGA6L7	A0A1B0GV03	622 aa		7.92	□□□□□ -1.14
SNHG1-223	ENST00000545440		A0A1B0GVM2	712 aa		7.92	□□□□□ -1.14
SNHG1-223	ENST00000545440	TCAF2	A6NFQ2	919 aa		7.92	□□□□□ -1.14
SNHG1-223	ENST00000545440	LGALS16	A8MUM7	142 aa		7.92	□□□□□ -1.14
SNHG1-223	ENST00000545440	KCNU1	A8MYU2	1149 aa		7.92	□□□□□ -1.14
SNHG1-223	ENST00000545440	C9orf172	C9J069	976 aa		7.92	□□□□□ -1.14
SNHG1-223	ENST00000545440		F5H5T6	163 aa		7.92	□□□□□ -1.14
SNHG1-223	ENST00000545440	DEAF1	O75398	565 aa	Predicted RBP	7.92	□□□□□ -1.14
SNHG1-223	ENST00000545440	GRAP2	O75791	330 aa		7.92	□□□□□ -1.14
SNHG1-223	ENST00000545440	ASL	P04424	464 aa		7.92	□□□□□ -1.14
SNHG1-223	ENST00000545440	EPHX1	P07099	455 aa		7.92	□□□□□ -1.14
SNHG1-223	ENST00000545440	ZNF18	P17022	549 aa		7.92	□□□□□ -1.14
SNHG1-223	ENST00000545440	POLR2E	P19388	210 aa	Known RBP	7.92	□□□□□ -1.14
SNHG1-223	ENST00000545440	ABCB4	P21439	1286 aa		7.92	□□□□□ -1.14
SNHG1-223	ENST00000545440	TACR2	P21452	398 aa		7.92	□□□□□ -1.14
SNHG1-223	ENST00000545440	CD70	P32970	193 aa		7.92	□□□□□ -1.14
SNHG1-223	ENST00000545440	MATK	P42679	507 aa		7.92	□□□□□ -1.14
SNHG1-223	ENST00000545440	PTGER3	P43115	390 aa		7.92	□□□□□ -1.14
SNHG1-223	ENST00000545440	GABRB2	P47870	512 aa		7.92	□□□□□ -1.14
SNHG1-223	ENST00000545440	COPB1	P53618	953 aa	Known RBP	7.92	□□□□□ -1.14
SNHG1-223	ENST00000545440	COPA	P53621	1224 aa		7.92	□□□□□ -1.14
SNHG1-223	ENST00000545440	JAM2	P57087	298 aa		7.92	□□□□□ -1.14
SNHG1-223	ENST00000545440	PITX1	P78337	314 aa	Predicted RBP	7.92	□□□□□ -1.14
SNHG1-223	ENST00000545440	LMAN2	Q12907	356 aa		7.92	□□□□□ -1.14
SNHG1-223	ENST00000545440	TAF5	Q15542	800 aa		7.92	□□□□□ -1.14
SNHG1-223	ENST00000545440	FNDC3B	Q53EP0	1204 aa	Known RBP	7.92	□□□□□ -1.14
SNHG1-223	ENST00000545440	ZC3H12A	Q5D1E8	599 aa	Known RBP	7.92	□□□□□ -1.14
SNHG1-223	ENST00000545440	OTUD1	Q5VV17	481 aa	Predicted RBP	7.92	□□□□□ -1.14
SNHG1-223	ENST00000545440	MBLAC2	Q68D91	279 aa		7.92	□□□□□ -1.14
SNHG1-223	ENST00000545440	IL31	Q6EBC2	164 aa		7.92	□□□□□ -1.14
SNHG1-223	ENST00000545440	OR6B2	Q6IFH4	312 aa		7.92	□□□□□ -1.14
SNHG1-223	ENST00000545440	KIAA1324	Q6UXG2	1013 aa	Known RBP	7.92	□□□□□ -1.14
SNHG1-223	ENST00000545440	BNC2	Q6ZN30	1099 aa	Predicted RBP	7.92	□□□□□ -1.14
SNHG1-223	ENST00000545440	ARMCX6	Q7L4S7	300 aa		7.92	□□□□□ -1.14
SNHG1-223	ENST00000545440	NOP9	Q86U38	636 aa	Known RBP	7.92	□□□□□ -1.14
SNHG1-223	ENST00000545440	PDZD3	Q86UT5	571 aa		7.92	□□□□□ -1.14
SNHG1-223	ENST00000545440	CHSY1	Q86X52	802 aa		7.92	□□□□□ -1.14
SNHG1-223	ENST00000545440	TMPRSS6	Q8IU80	811 aa		7.92	□□□□□ -1.14
SNHG1-223	ENST00000545440	TMEFF1	Q8IYR6	380 aa		7.92	□□□□□ -1.14
SNHG1-223	ENST00000545440	LGI2	Q8N0V4	545 aa		7.92	□□□□□ -1.14
SNHG1-223	ENST00000545440	KDM1B	Q8NB78	822 aa		7.92	□□□□□ -1.14
SNHG1-223	ENST00000545440	STK35	Q8TDR2	534 aa		7.92	□□□□□ -1.14
SNHG1-223	ENST00000545440	GPBAR1	Q8TDU6	330 aa		7.92	□□□□□ -1.14
SNHG1-223	ENST00000545440	CYB5D2	Q8WUJ1	264 aa		7.92	□□□□□ -1.14
SNHG1-223	ENST00000545440	SORCS1	Q8WY21	1168 aa		7.92	□□□□□ -1.14
SNHG1-223	ENST00000545440	PRCC	Q92733	491 aa	Predicted RBP	7.92	□□□□□ -1.14
SNHG1-223	ENST00000545440	TTC17	Q96AE7	1141 aa		7.92	□□□□□ -1.14
SNHG1-223	ENST00000545440	FERD3L	Q96RJ6	166 aa		7.92	□□□□□ -1.14
SNHG1-223	ENST00000545440	PRMT1	Q99873	361 aa	Known RBP	7.92	□□□□□ -1.14
SNHG1-223	ENST00000545440	CEP41	Q9BYV8	373 aa		7.92	□□□□□ -1.14
SNHG1-223	ENST00000545440	NAT10	Q9H0A0	1025 aa	Known RBP	7.92	□□□□□ -1.14
SNHG1-223	ENST00000545440	SLC6A17	Q9H1V8	727 aa		7.92	□□□□□ -1.14
SNHG1-223	ENST00000545440	VPS16	Q9H269	839 aa		7.92	□□□□□ -1.14
SNHG1-223	ENST00000545440	PDCL3	Q9H2J4	239 aa		7.92	□□□□□ -1.14
SNHG1-223	ENST00000545440	SMOC1	Q9H4F8	434 aa		7.92	□□□□□ -1.14
SNHG1-223	ENST00000545440	CCDC86	Q9H6F5	360 aa	Known RBP	7.92	□□□□□ -1.14
SNHG1-223	ENST00000545440	CD93	Q9NPY3	652 aa		7.92	□□□□□ -1.14
SNHG1-223	ENST00000545440	RXFP3	Q9NSD7	469 aa		7.92	□□□□□ -1.14
SNHG1-223	ENST00000545440	FAM207A	Q9NSI2	230 aa	Predicted RBP	7.92	□□□□□ -1.14
SNHG1-223	ENST00000545440	LIMA1	Q9UHB6	759 aa	Known RBP	7.92	□□□□□ -1.14
SNHG1-223	ENST00000545440	SLC12A6	Q9UHW9	1150 aa		7.92	□□□□□ -1.14
SNHG1-223	ENST00000545440	XPO7	Q9UIA9	1087 aa	Known RBP	7.92	□□□□□ -1.14
SNHG1-223	ENST00000545440	NOCT	Q9UK39	431 aa	Known RBP	7.92	□□□□□ -1.14
SNHG1-223	ENST00000545440	PILRB	Q9UKJ0	227 aa		7.92	□□□□□ -1.14
SNHG1-223	ENST00000545440	PLA2G4C	Q9UP65	541 aa		7.92	□□□□□ -1.14
SNHG1-223	ENST00000545440	SIK3	Q9Y2K2	1263 aa		7.92	□□□□□ -1.14
SNHG1-223	ENST00000545440	MED19	A0JLT2	244 aa	Predicted RBP	7.91	□□□□□ -1.14
SNHG1-223	ENST00000545440		M0QYT0	321 aa		7.91	□□□□□ -1.14
SNHG1-223	ENST00000545440	EPHB6	O15197	1021 aa		7.91	□□□□□ -1.14
SNHG1-223	ENST00000545440	DDX3Y	O15523	660 aa	Known RBP	7.91	□□□□□ -1.14
SNHG1-223	ENST00000545440	NDUFS2	O75306	463 aa		7.91	□□□□□ -1.14
SNHG1-223	ENST00000545440	MOCS3	O95396	460 aa		7.91	□□□□□ -1.14
SNHG1-223	ENST00000545440	MME	P08473	750 aa		7.91	□□□□□ -1.14
SNHG1-223	ENST00000545440	IMPDH2	P12268	514 aa		7.91	□□□□□ -1.14
SNHG1-223	ENST00000545440	HLA-E	P13747	358 aa		7.91	□□□□□ -1.14
SNHG1-223	ENST00000545440	CD6	P30203	668 aa		7.91	□□□□□ -1.14
SNHG1-223	ENST00000545440	OXTR	P30559	389 aa		7.91	□□□□□ -1.14

Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms