RNA–Protein interactions for RNA: ENST00000544504.5

YBX3-215, Transcript of Y-box binding protein 3, humanhuman

TSL 3

Gene YBX3, Length 583 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-215ENST00000544504 CACNA1IQ9P0X4 2223 aa9.71□□□□□ -0.85
YBX3-215ENST00000544504 LAMA1P25391 3075 aa9.71□□□□□ -0.85
YBX3-215ENST00000544504 C5orf60A6NFR6 353 aa9.71□□□□□ -0.86
YBX3-215ENST00000544504 TRDMT1O14717 391 aaKnown RBP9.71□□□□□ -0.86
YBX3-215ENST00000544504 MATN3O15232 486 aa9.71□□□□□ -0.86
YBX3-215ENST00000544504 CHADO15335 359 aa9.71□□□□□ -0.86
YBX3-215ENST00000544504 TTI1O43156 1089 aa9.71□□□□□ -0.86
YBX3-215ENST00000544504 CTIFO43310 598 aaKnown RBP9.71□□□□□ -0.86
YBX3-215ENST00000544504 OPHN1O60890 802 aa9.71□□□□□ -0.86
YBX3-215ENST00000544504 GCATO75600 419 aa9.71□□□□□ -0.86
YBX3-215ENST00000544504 HEXIM1O94992 359 aaKnown RBP9.71□□□□□ -0.86
YBX3-215ENST00000544504 PENKP01210 267 aaPredicted RBP9.71□□□□□ -0.86
YBX3-215ENST00000544504 IFNB1P01574 187 aa9.71□□□□□ -0.86
YBX3-215ENST00000544504 KRT14P02533 472 aa9.71□□□□□ -0.86
YBX3-215ENST00000544504 PROS1P07225 676 aa9.71□□□□□ -0.86
YBX3-215ENST00000544504 ADH5P11766 374 aa9.71□□□□□ -0.86
YBX3-215ENST00000544504 HOXB3P14651 431 aaPredicted RBP9.71□□□□□ -0.86
YBX3-215ENST00000544504 FCARP24071 287 aa9.71□□□□□ -0.86
YBX3-215ENST00000544504 HOXD9P28356 352 aaPredicted RBP9.71□□□□□ -0.86
YBX3-215ENST00000544504 RBL1P28749 1068 aa9.71□□□□□ -0.86
YBX3-215ENST00000544504 VIPR2P41587 438 aa9.71□□□□□ -0.86
YBX3-215ENST00000544504 KCNJ1P48048 391 aa9.71□□□□□ -0.86
YBX3-215ENST00000544504 PAPOLAP51003 745 aaKnown RBP9.71□□□□□ -0.86
YBX3-215ENST00000544504 RENBPP51606 427 aa9.71□□□□□ -0.86
YBX3-215ENST00000544504 PLK1P53350 603 aa9.71□□□□□ -0.86
YBX3-215ENST00000544504 IFI35P80217 286 aaPredicted RBP9.71□□□□□ -0.86
YBX3-215ENST00000544504 CAV1Q03135 178 aa9.71□□□□□ -0.86
YBX3-215ENST00000544504 IL10RBQ08334 325 aa9.71□□□□□ -0.86
YBX3-215ENST00000544504 CALCOCO2Q13137 446 aa9.71□□□□□ -0.86
YBX3-215ENST00000544504 SERINC3Q13530 473 aa9.71□□□□□ -0.86
YBX3-215ENST00000544504 CUL1Q13616 776 aa9.71□□□□□ -0.86
YBX3-215ENST00000544504 RFTN1Q14699 578 aaPredicted RBP9.71□□□□□ -0.86
YBX3-215ENST00000544504 CSRP2Q16527 193 aa9.71□□□□□ -0.86
YBX3-215ENST00000544504 EML3Q32P44 896 aa9.71□□□□□ -0.86
YBX3-215ENST00000544504 IL31Q6EBC2 164 aa9.71□□□□□ -0.86
YBX3-215ENST00000544504 ITPRIPL1Q6GPH6 555 aa9.71□□□□□ -0.86
YBX3-215ENST00000544504 RETSATQ6NUM9 610 aa9.71□□□□□ -0.86
YBX3-215ENST00000544504 TTC27Q6P3X3 843 aa9.71□□□□□ -0.86
YBX3-215ENST00000544504 PARM1Q6UWI2 310 aa9.71□□□□□ -0.86
YBX3-215ENST00000544504 CEP128Q6ZU80 1094 aa9.71□□□□□ -0.86
YBX3-215ENST00000544504 PCGF5Q86SE9 256 aa9.71□□□□□ -0.86
YBX3-215ENST00000544504 ZNF354CQ86Y25 554 aa9.71□□□□□ -0.86
YBX3-215ENST00000544504 FAM71DQ8N9W8 422 aa9.71□□□□□ -0.86
YBX3-215ENST00000544504 DCAF4L2Q8NA75 395 aa9.71□□□□□ -0.86
YBX3-215ENST00000544504 CASKIN2Q8WXE0 1202 aa9.71□□□□□ -0.86
YBX3-215ENST00000544504 FGF14Q92915 247 aa9.71□□□□□ -0.86
YBX3-215ENST00000544504 ARHGEF2Q92974 986 aaKnown RBP9.71□□□□□ -0.86
YBX3-215ENST00000544504 COL26A1Q96A83 441 aa9.71□□□□□ -0.86
YBX3-215ENST00000544504 ACDQ96AP0 544 aa9.71□□□□□ -0.86
YBX3-215ENST00000544504 P2RY11Q96G91 374 aa9.71□□□□□ -0.86
YBX3-215ENST00000544504 CELF6Q96J87 481 aaKnown RBP9.71□□□□□ -0.86
YBX3-215ENST00000544504 FAM118BQ9BPY3 351 aa9.71□□□□□ -0.86
YBX3-215ENST00000544504 TMEM121Q9BTD3 319 aa9.71□□□□□ -0.86
YBX3-215ENST00000544504 RPP25Q9BUL9 199 aaKnown RBP9.71□□□□□ -0.86
YBX3-215ENST00000544504 C2orf49Q9BVC5 232 aaPredicted RBP9.71□□□□□ -0.86
YBX3-215ENST00000544504 TRMT61BQ9BVS5 477 aaKnown RBP9.71□□□□□ -0.86
YBX3-215ENST00000544504 TSPYL1Q9H0U9 437 aa9.71□□□□□ -0.86
YBX3-215ENST00000544504 MUC3BQ9H195 1237 aa9.71□□□□□ -0.86
YBX3-215ENST00000544504 SEMA4GQ9NTN9 838 aa9.71□□□□□ -0.86
YBX3-215ENST00000544504 MFHAS1Q9Y4C4 1052 aa9.71□□□□□ -0.86
YBX3-215ENST00000544504 WNT6Q9Y6F9 365 aa9.71□□□□□ -0.86
YBX3-215ENST00000544504 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP9.7□□□□□ -0.86
YBX3-215ENST00000544504 A0A0A0MRY4 1105 aa9.7□□□□□ -0.86
YBX3-215ENST00000544504 GOLGA6CA6NDK9 693 aa9.7□□□□□ -0.86
YBX3-215ENST00000544504 GOLGA6BA6NDN3 693 aa9.7□□□□□ -0.86
YBX3-215ENST00000544504 PALM2-AKAP2B1ALY0 433 aaPredicted RBP9.7□□□□□ -0.86
YBX3-215ENST00000544504 NEDD8-MDP1E9PL57 170 aa9.7□□□□□ -0.86
YBX3-215ENST00000544504 RNF103O00237 685 aa9.7□□□□□ -0.86
YBX3-215ENST00000544504 SCAMP3O14828 347 aaKnown RBP9.7□□□□□ -0.86
YBX3-215ENST00000544504 KDELR3O43731 214 aa9.7□□□□□ -0.86
YBX3-215ENST00000544504 CACNG3O60359 315 aa9.7□□□□□ -0.86
YBX3-215ENST00000544504 MAFKO60675 156 aa9.7□□□□□ -0.86
YBX3-215ENST00000544504 PRAMEF11O60813 436 aa9.7□□□□□ -0.86
YBX3-215ENST00000544504 RHOXF2BP0C7M4 288 aa9.7□□□□□ -0.86
YBX3-215ENST00000544504 GOLGA6DP0CG33 693 aa9.7□□□□□ -0.86
YBX3-215ENST00000544504 TYRP14679 529 aa9.7□□□□□ -0.86
YBX3-215ENST00000544504 ITIH2P19823 946 aa9.7□□□□□ -0.86
YBX3-215ENST00000544504 CD72P21854 359 aa9.7□□□□□ -0.86
YBX3-215ENST00000544504 KCNA4P22459 653 aa9.7□□□□□ -0.86
YBX3-215ENST00000544504 FDFT1P37268 417 aa9.7□□□□□ -0.86
YBX3-215ENST00000544504 HSPA9P38646 679 aaKnown RBP9.7□□□□□ -0.86
YBX3-215ENST00000544504 ADCY8P40145 1251 aa9.7□□□□□ -0.86
YBX3-215ENST00000544504 EIF2DP41214 584 aaKnown RBP9.7□□□□□ -0.86
YBX3-215ENST00000544504 IRAK1P51617 712 aa9.7□□□□□ -0.86
YBX3-215ENST00000544504 SULT2A1Q06520 285 aa9.7□□□□□ -0.86
YBX3-215ENST00000544504 SLC20A2Q08357 652 aa9.7□□□□□ -0.86
YBX3-215ENST00000544504 HNRNPDQ14103 355 aaKnown RBP9.7□□□□□ -0.86
YBX3-215ENST00000544504 DHCR24Q15392 516 aa9.7□□□□□ -0.86
YBX3-215ENST00000544504 ERCC6LQ2NKX8 1250 aa9.7□□□□□ -0.86
YBX3-215ENST00000544504 LY6G5CQ5SRR4 150 aa9.7□□□□□ -0.86
YBX3-215ENST00000544504 FYB2Q5VWT5 728 aa9.7□□□□□ -0.86
YBX3-215ENST00000544504 RNF219Q5W0B1 726 aaPredicted RBP9.7□□□□□ -0.86
YBX3-215ENST00000544504 TANGO2Q6ICL3 276 aa9.7□□□□□ -0.86
YBX3-215ENST00000544504 CXorf57Q6NSI4 855 aaKnown RBP9.7□□□□□ -0.86
YBX3-215ENST00000544504 VITQ6UXI7 678 aa9.7□□□□□ -0.86
YBX3-215ENST00000544504 PRR23CQ6ZRP0 262 aa9.7□□□□□ -0.86
YBX3-215ENST00000544504 ARHGEF18Q6ZSZ5 1173 aa9.7□□□□□ -0.86
YBX3-215ENST00000544504 TPGS1Q6ZTW0 290 aa9.7□□□□□ -0.86
YBX3-215ENST00000544504 NUDT18Q6ZVK8 323 aa9.7□□□□□ -0.86
YBX3-215ENST00000544504 CIR1Q86X95 450 aaPredicted RBP9.7□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms