RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 NMRAL1Q9HBL8 299 aa17.19■□□□□ 0.34
USP28-208ENST00000540438 DMAP1Q9NPF5 467 aaPredicted RBP17.19■□□□□ 0.34
USP28-208ENST00000540438 SLC38A7Q9NVC3 462 aa17.19■□□□□ 0.34
USP28-208ENST00000540438 TAGLN3Q9UI15 199 aa17.19■□□□□ 0.34
USP28-208ENST00000540438 STX16-NPEPL1H3BU86 382 aa17.18■□□□□ 0.34
USP28-208ENST00000540438 UBTFL6P0CB48 400 aaPredicted RBP17.18■□□□□ 0.34
USP28-208ENST00000540438 PRSS56P0CW18 603 aa17.18■□□□□ 0.34
USP28-208ENST00000540438 ODC1P11926 461 aa17.18■□□□□ 0.34
USP28-208ENST00000540438 SOX11P35716 441 aa17.18■□□□□ 0.34
USP28-208ENST00000540438 PAPOLAP51003 745 aaKnown RBP17.18■□□□□ 0.34
USP28-208ENST00000540438 DEFB107AQ8IZN7 70 aa17.18■□□□□ 0.34
USP28-208ENST00000540438 FAM156AQ8NDB6 213 aa17.18■□□□□ 0.34
USP28-208ENST00000540438 RSPH1Q8WYR4 309 aa17.18■□□□□ 0.34
USP28-208ENST00000540438 CATSPER2Q96P56 530 aa17.18■□□□□ 0.34
USP28-208ENST00000540438 SLC45A1Q9Y2W3 748 aa17.18■□□□□ 0.34
USP28-208ENST00000540438 SERPINE1P05121 402 aa17.18■□□□□ 0.34
USP28-208ENST00000540438 TUBB3Q13509 450 aa17.18■□□□□ 0.34
USP28-208ENST00000540438 CNSTQ6PJW8 725 aa17.18■□□□□ 0.34
USP28-208ENST00000540438 DNAJC9Q8WXX5 260 aa17.18■□□□□ 0.34
USP28-208ENST00000540438 ELMO2Q96JJ3 720 aa17.18■□□□□ 0.34
USP28-208ENST00000540438 EXOC2Q96KP1 924 aa17.18■□□□□ 0.34
USP28-208ENST00000540438 DCDC2Q9UHG0 476 aa17.18■□□□□ 0.34
USP28-208ENST00000540438 TLK1Q9UKI8 766 aa17.18■□□□□ 0.34
USP28-208ENST00000540438 ZSWIM8A7E2V4 1837 aa17.18■□□□□ 0.34
USP28-208ENST00000540438 G3V2L1 256 aa17.18■□□□□ 0.34
USP28-208ENST00000540438 PKNOX1P55347 436 aa17.18■□□□□ 0.34
USP28-208ENST00000540438 YWHAHQ04917 246 aaPredicted RBP17.18■□□□□ 0.34
USP28-208ENST00000540438 CSHL1Q14406 222 aa17.18■□□□□ 0.34
USP28-208ENST00000540438 IHHQ14623 411 aa17.18■□□□□ 0.34
USP28-208ENST00000540438 LPCAT4Q643R3 524 aa17.18■□□□□ 0.34
USP28-208ENST00000540438 PDZD4Q76G19 769 aaPredicted RBP17.18■□□□□ 0.34
USP28-208ENST00000540438 ARHGAP12Q8IWW6 846 aa17.18■□□□□ 0.34
USP28-208ENST00000540438 TDRD5Q8NAT2 981 aaKnown RBP17.18■□□□□ 0.34
USP28-208ENST00000540438 OR6P1Q8NGX9 317 aa17.18■□□□□ 0.34
USP28-208ENST00000540438 ZNF398Q8TD17 642 aa17.18■□□□□ 0.34
USP28-208ENST00000540438 CRYL1Q9Y2S2 319 aa17.18■□□□□ 0.34
USP28-208ENST00000540438 C9JVG2 144 aa17.17■□□□□ 0.34
USP28-208ENST00000540438 PIGNO95427 931 aa17.17■□□□□ 0.34
USP28-208ENST00000540438 ZCCHC18P0CG32 403 aa17.17■□□□□ 0.34
USP28-208ENST00000540438 GRIA4P48058 902 aa17.17■□□□□ 0.34
USP28-208ENST00000540438 LIMK2P53671 638 aa17.17■□□□□ 0.34
USP28-208ENST00000540438 SLC10A7Q0GE19 358 aa17.17■□□□□ 0.34
USP28-208ENST00000540438 DLG1Q12959 904 aa17.17■□□□□ 0.34
USP28-208ENST00000540438 ARL13AQ5H913 290 aaPredicted RBP17.17■□□□□ 0.34
USP28-208ENST00000540438 KYAT3Q6YP21 454 aaKnown RBP17.17■□□□□ 0.34
USP28-208ENST00000540438 TMEM135Q86UB9 458 aa17.17■□□□□ 0.34
USP28-208ENST00000540438 GIPC2Q8TF65 315 aa17.17■□□□□ 0.34
USP28-208ENST00000540438 CPNE1Q99829 537 aa17.17■□□□□ 0.34
USP28-208ENST00000540438 ACE2Q9BYF1 805 aaPredicted RBP17.17■□□□□ 0.34
USP28-208ENST00000540438 CASS4Q9NQ75 786 aa17.17■□□□□ 0.34
USP28-208ENST00000540438 XPR1Q9UBH6 696 aa17.17■□□□□ 0.34
USP28-208ENST00000540438 TSPAN3O60637 253 aa17.17■□□□□ 0.34
USP28-208ENST00000540438 DUSP11O75319 330 aaKnown RBP17.17■□□□□ 0.34
USP28-208ENST00000540438 MLNP12872 115 aa17.17■□□□□ 0.34
USP28-208ENST00000540438 PRKAR2AP13861 404 aaKnown RBP17.17■□□□□ 0.34
USP28-208ENST00000540438 NME5P56597 212 aa17.17■□□□□ 0.34
USP28-208ENST00000540438 DSC2Q02487 901 aa17.17■□□□□ 0.34
USP28-208ENST00000540438 GALNT2Q10471 571 aa17.17■□□□□ 0.34
USP28-208ENST00000540438 RAB41Q5JT25 222 aa17.17■□□□□ 0.34
USP28-208ENST00000540438 KCTD11Q693B1 232 aa17.17■□□□□ 0.34
USP28-208ENST00000540438 RTN4RL1Q86UN2 441 aaPredicted RBP17.17■□□□□ 0.34
USP28-208ENST00000540438 SPDL1Q96EA4 605 aa17.17■□□□□ 0.34
USP28-208ENST00000540438 DNAI2Q9GZS0 605 aa17.17■□□□□ 0.34
USP28-208ENST00000540438 DCLRE1BQ9H816 532 aa17.17■□□□□ 0.34
USP28-208ENST00000540438 ZDHHC2Q9UIJ5 367 aa17.17■□□□□ 0.34
USP28-208ENST00000540438 HS3ST4Q9Y661 456 aa17.17■□□□□ 0.34
USP28-208ENST00000540438 DNAH14Q0VDD8 3507 aa17.17■□□□□ 0.34
USP28-208ENST00000540438 ATP6AP2A0A1C7CYW4 349 aa17.16■□□□□ 0.34
USP28-208ENST00000540438 TRAFD1O14545 582 aaPredicted RBP17.16■□□□□ 0.34
USP28-208ENST00000540438 KLF11O14901 512 aa17.16■□□□□ 0.34
USP28-208ENST00000540438 NVLO15381 856 aaKnown RBP17.16■□□□□ 0.34
USP28-208ENST00000540438 ATP6AP2O75787 350 aa17.16■□□□□ 0.34
USP28-208ENST00000540438 CD86P42081 329 aa17.16■□□□□ 0.34
USP28-208ENST00000540438 SPANXN3Q5MJ09 141 aa17.16■□□□□ 0.34
USP28-208ENST00000540438 RAP1GAP2Q684P5 730 aa17.16■□□□□ 0.34
USP28-208ENST00000540438 BNIPLQ7Z465 357 aa17.16■□□□□ 0.34
USP28-208ENST00000540438 SERINC5Q86VE9 423 aa17.16■□□□□ 0.34
USP28-208ENST00000540438 TRIM42Q8IWZ5 723 aa17.16■□□□□ 0.34
USP28-208ENST00000540438 FSTL5Q8N475 847 aaPredicted RBP17.16■□□□□ 0.34
USP28-208ENST00000540438 GMIPQ9P107 970 aa17.16■□□□□ 0.34
USP28-208ENST00000540438 FBXO21O94952 628 aa17.16■□□□□ 0.34
USP28-208ENST00000540438 MX2P20592 715 aa17.16■□□□□ 0.34
USP28-208ENST00000540438 SLC1A2P43004 574 aa17.16■□□□□ 0.34
USP28-208ENST00000540438 ANO7Q6IWH7 933 aa17.16■□□□□ 0.34
USP28-208ENST00000540438 LENG8Q96PV6 779 aaPredicted RBP17.16■□□□□ 0.34
USP28-208ENST00000540438 SEPT5Q99719 369 aaPredicted RBP17.16■□□□□ 0.34
USP28-208ENST00000540438 YIPF3Q9GZM5 350 aa17.16■□□□□ 0.34
USP28-208ENST00000540438 XIRP2A4UGR9 3374 aa17.16■□□□□ 0.34
USP28-208ENST00000540438 GPR182O15218 404 aa17.15■□□□□ 0.34
USP28-208ENST00000540438 RPL17P18621 184 aaKnown RBP17.15■□□□□ 0.34
USP28-208ENST00000540438 KCNA5P22460 613 aa17.15■□□□□ 0.34
USP28-208ENST00000540438 SERPINB8P50452 374 aa17.15■□□□□ 0.34
USP28-208ENST00000540438 TAS2R39P59534 338 aa17.15■□□□□ 0.34
USP28-208ENST00000540438 CDH17Q12864 832 aa17.15■□□□□ 0.34
USP28-208ENST00000540438 GRTP1Q5TC63 336 aa17.15■□□□□ 0.34
USP28-208ENST00000540438 LRRC74BQ6ZQY2 392 aa17.15■□□□□ 0.34
USP28-208ENST00000540438 SAPCD2Q86UD0 394 aa17.15■□□□□ 0.34
USP28-208ENST00000540438 TMPRSS6Q8IU80 811 aa17.15■□□□□ 0.34
USP28-208ENST00000540438 PSMG2Q969U7 264 aa17.15■□□□□ 0.34
USP28-208ENST00000540438 TBL1YQ9BQ87 522 aa17.15■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms