RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 IL1BP01584 269 aa13.23□□□□□ -0.29
VPS28-216ENST00000533806 CHRNA3P32297 505 aa13.23□□□□□ -0.29
VPS28-216ENST00000533806 GEMIN4P57678 1058 aaKnown RBP13.23□□□□□ -0.29
VPS28-216ENST00000533806 SF3A2Q15428 464 aaKnown RBP13.23□□□□□ -0.29
VPS28-216ENST00000533806 TTC31Q49AM3 519 aaPredicted RBP13.23□□□□□ -0.29
VPS28-216ENST00000533806 INO80DQ53TQ3 878 aaPredicted RBP13.23□□□□□ -0.29
VPS28-216ENST00000533806 DPY19L3Q6ZPD9 716 aa13.23□□□□□ -0.29
VPS28-216ENST00000533806 ARMCX6Q7L4S7 300 aa13.23□□□□□ -0.29
VPS28-216ENST00000533806 CYP2U1Q7Z449 544 aa13.23□□□□□ -0.29
VPS28-216ENST00000533806 FAM124AQ86V42 546 aa13.23□□□□□ -0.29
VPS28-216ENST00000533806 TMTC1Q8IUR5 882 aa13.23□□□□□ -0.29
VPS28-216ENST00000533806 CHST14Q8NCH0 376 aa13.23□□□□□ -0.29
VPS28-216ENST00000533806 HSPH1Q92598 858 aa13.23□□□□□ -0.29
VPS28-216ENST00000533806 HSPA12BQ96MM6 686 aa13.23□□□□□ -0.29
VPS28-216ENST00000533806 ORAI3Q9BRQ5 295 aa13.23□□□□□ -0.29
VPS28-216ENST00000533806 BTBD1Q9H0C5 482 aa13.23□□□□□ -0.29
VPS28-216ENST00000533806 TNKS2Q9H2K2 1166 aa13.23□□□□□ -0.29
VPS28-216ENST00000533806 SMOC1Q9H4F8 434 aa13.23□□□□□ -0.29
VPS28-216ENST00000533806 C6orf106Q9H6K1 298 aaPredicted RBP13.23□□□□□ -0.29
VPS28-216ENST00000533806 SGK2Q9HBY8 427 aa13.23□□□□□ -0.29
VPS28-216ENST00000533806 RCOR3Q9P2K3 495 aaPredicted RBP13.23□□□□□ -0.29
VPS28-216ENST00000533806 IMPACTQ9P2X3 320 aa13.23□□□□□ -0.29
VPS28-216ENST00000533806 EVLQ9UI08 416 aaPredicted RBP13.23□□□□□ -0.29
VPS28-216ENST00000533806 FCF1Q9Y324 198 aaKnown RBP13.23□□□□□ -0.29
VPS28-216ENST00000533806 DYNC1LI1Q9Y6G9 523 aaKnown RBP13.23□□□□□ -0.29
VPS28-216ENST00000533806 A0A1W2PP55 124 aa13.22□□□□□ -0.29
VPS28-216ENST00000533806 PATE3B3GLJ2 98 aa13.22□□□□□ -0.29
VPS28-216ENST00000533806 H3BRJ5 948 aa13.22□□□□□ -0.29
VPS28-216ENST00000533806 PRAMEF11O60813 436 aa13.22□□□□□ -0.29
VPS28-216ENST00000533806 NDUFS2O75306 463 aa13.22□□□□□ -0.29
VPS28-216ENST00000533806 NDUFA10O95299 355 aa13.22□□□□□ -0.29
VPS28-216ENST00000533806 CD48P09326 243 aa13.22□□□□□ -0.29
VPS28-216ENST00000533806 DPP6P42658 865 aa13.22□□□□□ -0.29
VPS28-216ENST00000533806 MAGEA1P43355 309 aa13.22□□□□□ -0.29
VPS28-216ENST00000533806 PSMD8P48556 350 aa13.22□□□□□ -0.29
VPS28-216ENST00000533806 PAPOLAP51003 745 aaKnown RBP13.22□□□□□ -0.29
VPS28-216ENST00000533806 CARD16Q5EG05 197 aa13.22□□□□□ -0.29
VPS28-216ENST00000533806 FAM46CQ5VWP2 391 aa13.22□□□□□ -0.29
VPS28-216ENST00000533806 TCEAL6Q6IPX3 200 aa13.22□□□□□ -0.29
VPS28-216ENST00000533806 RAD9BQ6WBX8 426 aa13.22□□□□□ -0.29
VPS28-216ENST00000533806 LEKR1Q6ZMV7 388 aa13.22□□□□□ -0.29
VPS28-216ENST00000533806 DSG4Q86SJ6 1040 aa13.22□□□□□ -0.29
VPS28-216ENST00000533806 TP53INP2Q8IXH6 220 aa13.22□□□□□ -0.29
VPS28-216ENST00000533806 HDDC3Q8N4P3 179 aa13.22□□□□□ -0.29
VPS28-216ENST00000533806 LZTR1Q8N653 840 aa13.22□□□□□ -0.29
VPS28-216ENST00000533806 PIP4K2CQ8TBX8 421 aa13.22□□□□□ -0.29
VPS28-216ENST00000533806 CASKIN2Q8WXE0 1202 aa13.22□□□□□ -0.29
VPS28-216ENST00000533806 PIGKQ92643 395 aa13.22□□□□□ -0.29
VPS28-216ENST00000533806 TCEAL3Q969E4 200 aa13.22□□□□□ -0.29
VPS28-216ENST00000533806 CELF6Q96J87 481 aaKnown RBP13.22□□□□□ -0.29
VPS28-216ENST00000533806 RXFP3Q9NSD7 469 aa13.22□□□□□ -0.29
VPS28-216ENST00000533806 HPCAL4Q9UM19 191 aa13.22□□□□□ -0.29
VPS28-216ENST00000533806 NCKAP1Q9Y2A7 1128 aa13.22□□□□□ -0.29
VPS28-216ENST00000533806 ZBTB32Q9Y2Y4 487 aaPredicted RBP13.22□□□□□ -0.29
VPS28-216ENST00000533806 REXO2Q9Y3B8 237 aaKnown RBP13.22□□□□□ -0.29
VPS28-216ENST00000533806 MFHAS1Q9Y4C4 1052 aa13.22□□□□□ -0.29
VPS28-216ENST00000533806 PCDHA13Q9Y5I0 950 aa13.22□□□□□ -0.29
VPS28-216ENST00000533806 EPN1Q9Y6I3 576 aaPredicted RBP13.22□□□□□ -0.29
VPS28-216ENST00000533806 WASF2Q9Y6W5 498 aa13.22□□□□□ -0.29
VPS28-216ENST00000533806 RCCD1A6NED2 376 aa13.21□□□□□ -0.29
VPS28-216ENST00000533806 SOWAHDA6NJG2 315 aa13.21□□□□□ -0.29
VPS28-216ENST00000533806 J3KR12 359 aa13.21□□□□□ -0.29
VPS28-216ENST00000533806 SLC7A4O43246 635 aa13.21□□□□□ -0.29
VPS28-216ENST00000533806 DAPK3O43293 454 aa13.21□□□□□ -0.29
VPS28-216ENST00000533806 BUB1O43683 1085 aa13.21□□□□□ -0.29
VPS28-216ENST00000533806 GDF9O60383 454 aa13.21□□□□□ -0.29
VPS28-216ENST00000533806 RNASEH2AO75792 299 aaKnown RBP13.21□□□□□ -0.29
VPS28-216ENST00000533806 SEMA4FO95754 770 aa13.21□□□□□ -0.29
VPS28-216ENST00000533806 PEX11BO96011 259 aa13.21□□□□□ -0.29
VPS28-216ENST00000533806 GSRP00390 522 aa13.21□□□□□ -0.29
VPS28-216ENST00000533806 IGHV4-34P06331 123 aa13.21□□□□□ -0.29
VPS28-216ENST00000533806 AMPD1P23109 780 aa13.21□□□□□ -0.29
VPS28-216ENST00000533806 ARL4AP40617 200 aa13.21□□□□□ -0.29
VPS28-216ENST00000533806 TAS2R38P59533 333 aa13.21□□□□□ -0.29
VPS28-216ENST00000533806 LMNB2Q03252 620 aa13.21□□□□□ -0.29
VPS28-216ENST00000533806 SFSWAPQ12872 951 aaKnown RBP13.21□□□□□ -0.29
VPS28-216ENST00000533806 DPYSL3Q14195 570 aa13.21□□□□□ -0.29
VPS28-216ENST00000533806 MESDQ14696 234 aa13.21□□□□□ -0.29
VPS28-216ENST00000533806 CYTH1Q15438 398 aa13.21□□□□□ -0.29
VPS28-216ENST00000533806 HADHQ16836 314 aaKnown RBP13.21□□□□□ -0.29
VPS28-216ENST00000533806 ARSIQ5FYB1 569 aa13.21□□□□□ -0.29
VPS28-216ENST00000533806 LRRC38Q5VT99 294 aa13.21□□□□□ -0.29
VPS28-216ENST00000533806 AGBL4Q5VU57 503 aa13.21□□□□□ -0.29
VPS28-216ENST00000533806 DCAF12L1Q5VU92 463 aa13.21□□□□□ -0.29
VPS28-216ENST00000533806 SLC23A3Q6PIS1 610 aa13.21□□□□□ -0.29
VPS28-216ENST00000533806 OR2AP1Q8NGE2 309 aa13.21□□□□□ -0.29
VPS28-216ENST00000533806 BIRC7Q96CA5 298 aa13.21□□□□□ -0.29
VPS28-216ENST00000533806 FAF2Q96CS3 445 aa13.21□□□□□ -0.29
VPS28-216ENST00000533806 CCDC114Q96M63 670 aa13.21□□□□□ -0.29
VPS28-216ENST00000533806 CAPN10Q9HC96 672 aa13.21□□□□□ -0.29
VPS28-216ENST00000533806 IL36AQ9UHA7 158 aa13.21□□□□□ -0.29
VPS28-216ENST00000533806 TFR2Q9UP52 801 aa13.21□□□□□ -0.29
VPS28-216ENST00000533806 SLCO1B1Q9Y6L6 691 aa13.21□□□□□ -0.29
VPS28-216ENST00000533806 GON4LQ3T8J9 2241 aa13.21□□□□□ -0.29
VPS28-216ENST00000533806 TNRC6BQ9UPQ9 1833 aaKnown RBP13.2□□□□□ -0.3
VPS28-216ENST00000533806 A0A0A6YYK5 440 aaPredicted RBP13.2□□□□□ -0.3
VPS28-216ENST00000533806 LNP1A1A4G5 178 aa13.2□□□□□ -0.3
VPS28-216ENST00000533806 C3orf70A6NLC5 250 aaPredicted RBP13.2□□□□□ -0.3
VPS28-216ENST00000533806 PRR5-ARHGAP8B1AHC4 643 aa13.2□□□□□ -0.3
VPS28-216ENST00000533806 PLK4O00444 970 aa13.2□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms