RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 KLHDC8BQ8IXV7 354 aa21.39■■□□□ 1.01
VPS28-208ENST00000527797 OR2W6PQ8NHA6 318 aa21.39■■□□□ 1.01
VPS28-208ENST00000527797 UHMK1Q8TAS1 419 aaKnown RBP21.39■■□□□ 1.01
VPS28-208ENST00000527797 IRF7Q92985 503 aa21.39■■□□□ 1.01
VPS28-208ENST00000527797 LRRC39Q96DD0 335 aa21.39■■□□□ 1.01
VPS28-208ENST00000527797 OXNAD1Q96HP4 312 aaPredicted RBP21.39■■□□□ 1.01
VPS28-208ENST00000527797 ASB16Q96NS5 453 aa21.39■■□□□ 1.01
VPS28-208ENST00000527797 SPHK2Q9NRA0 654 aa21.39■■□□□ 1.01
VPS28-208ENST00000527797 FAM53CQ9NYF3 392 aa21.39■■□□□ 1.01
VPS28-208ENST00000527797 UBP1Q9NZI7 540 aa21.39■■□□□ 1.01
VPS28-208ENST00000527797 OR51B4Q9Y5P0 310 aa21.39■■□□□ 1.01
VPS28-208ENST00000527797 WNT6Q9Y6F9 365 aa21.39■■□□□ 1.01
VPS28-208ENST00000527797 DYNC1LI1Q9Y6G9 523 aaKnown RBP21.39■■□□□ 1.01
VPS28-208ENST00000527797 TMEM265A0A087WTH1 108 aa21.38■■□□□ 1.01
VPS28-208ENST00000527797 A0A1W2PPC1 479 aa21.38■■□□□ 1.01
VPS28-208ENST00000527797 GLDCP23378 1020 aa21.38■■□□□ 1.01
VPS28-208ENST00000527797 ELK3P41970 407 aa21.38■■□□□ 1.01
VPS28-208ENST00000527797 MAGEA3P43357 314 aa21.38■■□□□ 1.01
VPS28-208ENST00000527797 HSP90B2PQ58FF3 399 aa21.38■■□□□ 1.01
VPS28-208ENST00000527797 CEP85LQ5SZL2 805 aa21.38■■□□□ 1.01
VPS28-208ENST00000527797 NAPEPLDQ6IQ20 393 aa21.38■■□□□ 1.01
VPS28-208ENST00000527797 PALM2Q8IXS6 379 aa21.38■■□□□ 1.01
VPS28-208ENST00000527797 ADGRG2Q8IZP9 1017 aa21.38■■□□□ 1.01
VPS28-208ENST00000527797 GOLGA6L1Q8N7Z2 621 aa21.38■■□□□ 1.01
VPS28-208ENST00000527797 SPATA22Q8NHS9 363 aa21.38■■□□□ 1.01
VPS28-208ENST00000527797 VPS37BQ9H9H4 285 aa21.38■■□□□ 1.01
VPS28-208ENST00000527797 CLEC1BQ9P126 229 aa21.38■■□□□ 1.01
VPS28-208ENST00000527797 SEPT3Q9UH03 358 aa21.38■■□□□ 1.01
VPS28-208ENST00000527797 CDH22Q9UJ99 828 aa21.38■■□□□ 1.01
VPS28-208ENST00000527797 TEX264Q9Y6I9 313 aa21.38■■□□□ 1.01
VPS28-208ENST00000527797 HELZP42694 1942 aaKnown RBP21.38■■□□□ 1.01
VPS28-208ENST00000527797 PENKP01210 267 aaPredicted RBP21.37■■□□□ 1.01
VPS28-208ENST00000527797 TSHRP16473 764 aa21.37■■□□□ 1.01
VPS28-208ENST00000527797 VIPR2P41587 438 aa21.37■■□□□ 1.01
VPS28-208ENST00000527797 MAXP61244 160 aa21.37■■□□□ 1.01
VPS28-208ENST00000527797 LINC00523Q86TU6 105 aa21.37■■□□□ 1.01
VPS28-208ENST00000527797 DCAF4L2Q8NA75 395 aa21.37■■□□□ 1.01
VPS28-208ENST00000527797 ATP11CQ8NB49 1132 aa21.37■■□□□ 1.01
VPS28-208ENST00000527797 ALG14Q96F25 216 aa21.37■■□□□ 1.01
VPS28-208ENST00000527797 IMP4Q96G21 291 aaKnown RBP21.37■■□□□ 1.01
VPS28-208ENST00000527797 CINPQ9BW66 212 aaPredicted RBP21.37■■□□□ 1.01
VPS28-208ENST00000527797 BBS2Q9BXC9 721 aa21.37■■□□□ 1.01
VPS28-208ENST00000527797 POLR1EQ9GZS1 481 aaKnown RBP21.37■■□□□ 1.01
VPS28-208ENST00000527797 LRRC4CQ9HCJ2 640 aa21.37■■□□□ 1.01
VPS28-208ENST00000527797 MED4Q9NPJ6 270 aa21.37■■□□□ 1.01
VPS28-208ENST00000527797 CLEC4EQ9ULY5 219 aa21.37■■□□□ 1.01
VPS28-208ENST00000527797 CHMP2BQ9UQN3 213 aa21.37■■□□□ 1.01
VPS28-208ENST00000527797 NEDD8-MDP1E9PL57 170 aa21.37■■□□□ 1.01
VPS28-208ENST00000527797 AP3B1O00203 1094 aa21.37■■□□□ 1.01
VPS28-208ENST00000527797 ZMPSTE24O75844 475 aa21.37■■□□□ 1.01
VPS28-208ENST00000527797 MT-CYBP00156 380 aaPredicted RBP21.37■■□□□ 1.01
VPS28-208ENST00000527797 SHBGP04278 402 aa21.37■■□□□ 1.01
VPS28-208ENST00000527797 ABHD2P08910 425 aa21.37■■□□□ 1.01
VPS28-208ENST00000527797 ZNF844Q08AG5 666 aa21.37■■□□□ 1.01
VPS28-208ENST00000527797 LMAN2Q12907 356 aa21.37■■□□□ 1.01
VPS28-208ENST00000527797 MPP3Q13368 585 aa21.37■■□□□ 1.01
VPS28-208ENST00000527797 SLC12A1Q13621 1099 aa21.37■■□□□ 1.01
VPS28-208ENST00000527797 PGBD5Q8N414 524 aa21.37■■□□□ 1.01
VPS28-208ENST00000527797 ZNF557Q8N988 423 aaPredicted RBP21.37■■□□□ 1.01
VPS28-208ENST00000527797 BPIFB1Q8TDL5 484 aa21.37■■□□□ 1.01
VPS28-208ENST00000527797 LRRC3BQ96PB8 259 aa21.37■■□□□ 1.01
VPS28-208ENST00000527797 WDR83Q9BRX9 315 aaKnown RBP21.37■■□□□ 1.01
VPS28-208ENST00000527797 C2orf49Q9BVC5 232 aaPredicted RBP21.37■■□□□ 1.01
VPS28-208ENST00000527797 DUS2Q9NX74 493 aaKnown RBP21.37■■□□□ 1.01
VPS28-208ENST00000527797 OBP2AQ9NY56 170 aa21.37■■□□□ 1.01
VPS28-208ENST00000527797 CDH7Q9ULB5 785 aa21.37■■□□□ 1.01
VPS28-208ENST00000527797 MTCH2Q9Y6C9 303 aa21.37■■□□□ 1.01
VPS28-208ENST00000527797 A0A087WUV0 522 aaPredicted RBP21.36■■□□□ 1.01
VPS28-208ENST00000527797 SDR42E2A6NKP2 422 aa21.36■■□□□ 1.01
VPS28-208ENST00000527797 SNAP91O60641 907 aa21.36■■□□□ 1.01
VPS28-208ENST00000527797 PHBP35232 272 aa21.36■■□□□ 1.01
VPS28-208ENST00000527797 ARF5P84085 180 aa21.36■■□□□ 1.01
VPS28-208ENST00000527797 DSC2Q02487 901 aa21.36■■□□□ 1.01
VPS28-208ENST00000527797 NIPAL4Q0D2K0 466 aa21.36■■□□□ 1.01
VPS28-208ENST00000527797 GRIN2CQ14957 1233 aa21.36■■□□□ 1.01
VPS28-208ENST00000527797 LY6G5CQ5SRR4 150 aa21.36■■□□□ 1.01
VPS28-208ENST00000527797 EP400NLQ6ZTU2 488 aa21.36■■□□□ 1.01
VPS28-208ENST00000527797 AGGF1Q8N302 714 aaeCLIP21.36■■□□□ 1.01
VPS28-208ENST00000527797 OR52K1Q8NGK4 314 aa21.36■■□□□ 1.01
VPS28-208ENST00000527797 OSCP1Q8WVF1 389 aa21.36■■□□□ 1.01
VPS28-208ENST00000527797 RSPRY1Q96DX4 576 aa21.36■■□□□ 1.01
VPS28-208ENST00000527797 SIGLEC10Q96LC7 697 aa21.36■■□□□ 1.01
VPS28-208ENST00000527797 SH3GL2Q99962 352 aa21.36■■□□□ 1.01
VPS28-208ENST00000527797 CCDC77Q9BR77 488 aa21.36■■□□□ 1.01
VPS28-208ENST00000527797 S1PR5Q9H228 398 aa21.36■■□□□ 1.01
VPS28-208ENST00000527797 TTYH1Q9H313 450 aaPredicted RBP21.36■■□□□ 1.01
VPS28-208ENST00000527797 TRPV4Q9HBA0 871 aa21.36■■□□□ 1.01
VPS28-208ENST00000527797 CASS4Q9NQ75 786 aa21.36■■□□□ 1.01
VPS28-208ENST00000527797 VPS45Q9NRW7 570 aa21.36■■□□□ 1.01
VPS28-208ENST00000527797 CLDND1Q9NY35 253 aa21.36■■□□□ 1.01
VPS28-208ENST00000527797 MARK1Q9P0L2 795 aa21.36■■□□□ 1.01
VPS28-208ENST00000527797 VPS51Q9UID3 782 aa21.36■■□□□ 1.01
VPS28-208ENST00000527797 ACTL7AQ9Y615 435 aa21.36■■□□□ 1.01
VPS28-208ENST00000527797 SHROOM3Q8TF72 1996 aa21.36■■□□□ 1.01
VPS28-208ENST00000527797 GOLGA6L10A6NI86 522 aa21.35■■□□□ 1.01
VPS28-208ENST00000527797 USP12O75317 370 aa21.35■■□□□ 1.01
VPS28-208ENST00000527797 CPP00450 1065 aa21.35■■□□□ 1.01
VPS28-208ENST00000527797 PLK1P53350 603 aa21.35■■□□□ 1.01
VPS28-208ENST00000527797 SESN2P58004 480 aaPredicted RBP21.35■■□□□ 1.01
VPS28-208ENST00000527797 GPX6P59796 221 aa21.35■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms