RNA–Protein interactions for RNA: ENST00000526054.5

VPS28-204, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 892 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-204ENST00000526054 PPP1R9BQ96SB3 815 aa10.39□□□□□ -0.75
VPS28-204ENST00000526054 ZYG11BQ9C0D3 744 aa10.39□□□□□ -0.75
VPS28-204ENST00000526054 TM9SF3Q9HD45 589 aa10.39□□□□□ -0.75
VPS28-204ENST00000526054 KIAA1522Q9P206 1035 aaPredicted RBP10.39□□□□□ -0.75
VPS28-204ENST00000526054 PPARGC1AQ9UBK2 798 aaKnown RBP10.39□□□□□ -0.75
VPS28-204ENST00000526054 OR12D3Q9UGF7 316 aa10.39□□□□□ -0.75
VPS28-204ENST00000526054 FZD10Q9ULW2 581 aa10.39□□□□□ -0.75
VPS28-204ENST00000526054 LHX6Q9UPM6 363 aa10.39□□□□□ -0.75
VPS28-204ENST00000526054 PCDHGB2Q9Y5G2 931 aa10.39□□□□□ -0.75
VPS28-204ENST00000526054 PCDHA13Q9Y5I0 950 aa10.39□□□□□ -0.75
VPS28-204ENST00000526054 SNX10Q9Y5X0 201 aa10.39□□□□□ -0.75
VPS28-204ENST00000526054 ATRXP46100 2492 aa10.39□□□□□ -0.75
VPS28-204ENST00000526054 PLXNB3Q9ULL4 1909 aa10.39□□□□□ -0.75
VPS28-204ENST00000526054 FASNP49327 2511 aaKnown RBP10.38□□□□□ -0.75
VPS28-204ENST00000526054 FREM2Q5SZK8 3169 aa10.38□□□□□ -0.75
VPS28-204ENST00000526054 IGLV3-10A0A075B6K4 115 aa10.38□□□□□ -0.75
VPS28-204ENST00000526054 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP10.38□□□□□ -0.75
VPS28-204ENST00000526054 SRGAP2O75044 1071 aa10.38□□□□□ -0.75
VPS28-204ENST00000526054 MTA2O94776 668 aa10.38□□□□□ -0.75
VPS28-204ENST00000526054 PROSCO94903 275 aa10.38□□□□□ -0.75
VPS28-204ENST00000526054 ASLP04424 464 aa10.38□□□□□ -0.75
VPS28-204ENST00000526054 C7P10643 843 aa10.38□□□□□ -0.75
VPS28-204ENST00000526054 CD27P26842 260 aa10.38□□□□□ -0.75
VPS28-204ENST00000526054 L1CAMP32004 1257 aa10.38□□□□□ -0.75
VPS28-204ENST00000526054 MAN1A1P33908 653 aa10.38□□□□□ -0.75
VPS28-204ENST00000526054 HTR7P34969 479 aa10.38□□□□□ -0.75
VPS28-204ENST00000526054 SSR1P43307 286 aaKnown RBP10.38□□□□□ -0.75
VPS28-204ENST00000526054 CCT8P50990 548 aa10.38□□□□□ -0.75
VPS28-204ENST00000526054 ZNF135P52742 658 aaPredicted RBP10.38□□□□□ -0.75
VPS28-204ENST00000526054 KRT83P78385 493 aa10.38□□□□□ -0.75
VPS28-204ENST00000526054 ZNF177Q13360 481 aaPredicted RBP10.38□□□□□ -0.75
VPS28-204ENST00000526054 SLC12A1Q13621 1099 aa10.38□□□□□ -0.75
VPS28-204ENST00000526054 SUZ12Q15022 739 aaKnown RBP10.38□□□□□ -0.75
VPS28-204ENST00000526054 HADHQ16836 314 aaKnown RBP10.38□□□□□ -0.75
VPS28-204ENST00000526054 KIF19Q2TAC6 998 aa10.38□□□□□ -0.75
VPS28-204ENST00000526054 ERMARDQ5T6L9 678 aa10.38□□□□□ -0.75
VPS28-204ENST00000526054 RWDD4Q6NW29 188 aaKnown RBP10.38□□□□□ -0.75
VPS28-204ENST00000526054 LAYNQ6UX15 382 aa10.38□□□□□ -0.75
VPS28-204ENST00000526054 ADAT2Q7Z6V5 191 aaKnown RBP10.38□□□□□ -0.75
VPS28-204ENST00000526054 SLCO6A1Q86UG4 719 aa10.38□□□□□ -0.75
VPS28-204ENST00000526054 CIR1Q86X95 450 aaPredicted RBP10.38□□□□□ -0.75
VPS28-204ENST00000526054 TMEM139Q8IV31 216 aa10.38□□□□□ -0.75
VPS28-204ENST00000526054 PSTKQ8IV42 348 aaKnown RBP10.38□□□□□ -0.75
VPS28-204ENST00000526054 ZNF683Q8IZ20 524 aa10.38□□□□□ -0.75
VPS28-204ENST00000526054 SLC35G2Q8TBE7 412 aa10.38□□□□□ -0.75
VPS28-204ENST00000526054 RHBDD1Q8TEB9 315 aa10.38□□□□□ -0.75
VPS28-204ENST00000526054 GANCQ8TET4 914 aa10.38□□□□□ -0.75
VPS28-204ENST00000526054 TBC1D31Q96DN5 1066 aa10.38□□□□□ -0.75
VPS28-204ENST00000526054 PDLIM2Q96JY6 352 aa10.38□□□□□ -0.75
VPS28-204ENST00000526054 CDC6Q99741 560 aa10.38□□□□□ -0.75
VPS28-204ENST00000526054 EPAS1Q99814 870 aa10.38□□□□□ -0.75
VPS28-204ENST00000526054 SNRNP25Q9BV90 132 aaKnown RBP10.38□□□□□ -0.75
VPS28-204ENST00000526054 RSPH9Q9H1X1 276 aaPredicted RBP10.38□□□□□ -0.75
VPS28-204ENST00000526054 PABPC3Q9H361 631 aaKnown RBP10.38□□□□□ -0.75
VPS28-204ENST00000526054 RETREG1Q9H6L5 497 aa10.38□□□□□ -0.75
VPS28-204ENST00000526054 SGK2Q9HBY8 427 aa10.38□□□□□ -0.75
VPS28-204ENST00000526054 OSGEPQ9NPF4 335 aa10.38□□□□□ -0.75
VPS28-204ENST00000526054 SUN2Q9UH99 717 aa10.38□□□□□ -0.75
VPS28-204ENST00000526054 PCSK1NQ9UHG2 260 aa10.38□□□□□ -0.75
VPS28-204ENST00000526054 AP4E1Q9UPM8 1137 aa10.38□□□□□ -0.75
VPS28-204ENST00000526054 NCKAP1Q9Y2A7 1128 aa10.38□□□□□ -0.75
VPS28-204ENST00000526054 ANKRD6Q9Y2G4 727 aa10.38□□□□□ -0.75
VPS28-204ENST00000526054 SNX11Q9Y5W9 270 aa10.38□□□□□ -0.75
VPS28-204ENST00000526054 A0A0A6YYK5 440 aaPredicted RBP10.37□□□□□ -0.75
VPS28-204ENST00000526054 FAM47DPA6NHR8 397 aa10.37□□□□□ -0.75
VPS28-204ENST00000526054 GOLGA8CPA6NN73 597 aa10.37□□□□□ -0.75
VPS28-204ENST00000526054 DRGXA6NNA5 263 aa10.37□□□□□ -0.75
VPS28-204ENST00000526054 TMEM110-MUSTN1A8MSY1 372 aa10.37□□□□□ -0.75
VPS28-204ENST00000526054 RNASEH1O60930 286 aaKnown RBP10.37□□□□□ -0.75
VPS28-204ENST00000526054 SIN3BO75182 1162 aa10.37□□□□□ -0.75
VPS28-204ENST00000526054 CNTN5O94779 1100 aa10.37□□□□□ -0.75
VPS28-204ENST00000526054 LRIG2O94898 1065 aa10.37□□□□□ -0.75
VPS28-204ENST00000526054 RHOCP08134 193 aa10.37□□□□□ -0.75
VPS28-204ENST00000526054 CSKP41240 450 aa10.37□□□□□ -0.75
VPS28-204ENST00000526054 ARHGAP25P42331 645 aa10.37□□□□□ -0.75
VPS28-204ENST00000526054 GRK6P43250 576 aa10.37□□□□□ -0.75
VPS28-204ENST00000526054 NOP2P46087 812 aaKnown RBP10.37□□□□□ -0.75
VPS28-204ENST00000526054 IRAK1P51617 712 aa10.37□□□□□ -0.75
VPS28-204ENST00000526054 MESDQ14696 234 aa10.37□□□□□ -0.75
VPS28-204ENST00000526054 TCEAL1Q15170 157 aa10.37□□□□□ -0.75
VPS28-204ENST00000526054 HNRNPA1L2Q32P51 320 aaKnown RBP10.37□□□□□ -0.75
VPS28-204ENST00000526054 INAVAQ3KP66 663 aa10.37□□□□□ -0.75
VPS28-204ENST00000526054 BOLA3Q53S33 107 aa10.37□□□□□ -0.75
VPS28-204ENST00000526054 ALFQ53S48 1182 aa10.37□□□□□ -0.75
VPS28-204ENST00000526054 C6orf118Q5T5N4 469 aa10.37□□□□□ -0.75
VPS28-204ENST00000526054 MANEALQ5VSG8 457 aa10.37□□□□□ -0.75
VPS28-204ENST00000526054 KIAA0895LQ68EN5 471 aa10.37□□□□□ -0.75
VPS28-204ENST00000526054 CCNI2Q6ZMN8 369 aaPredicted RBP10.37□□□□□ -0.75
VPS28-204ENST00000526054 USP30Q70CQ3 517 aa10.37□□□□□ -0.75
VPS28-204ENST00000526054 KIAA1328Q86T90 577 aa10.37□□□□□ -0.75
VPS28-204ENST00000526054 ARFGAP1Q8N6T3 406 aa10.37□□□□□ -0.75
VPS28-204ENST00000526054 ACRBPQ8NEB7 543 aa10.37□□□□□ -0.75
VPS28-204ENST00000526054 NBEAQ8NFP9 2946 aa10.37□□□□□ -0.75
VPS28-204ENST00000526054 MYO19Q96H55 970 aa10.37□□□□□ -0.75
VPS28-204ENST00000526054 CALR3Q96L12 384 aaKnown RBP10.37□□□□□ -0.75
VPS28-204ENST00000526054 PEBP4Q96S96 227 aa10.37□□□□□ -0.75
VPS28-204ENST00000526054 MTG2Q9H4K7 406 aa10.37□□□□□ -0.75
VPS28-204ENST00000526054 DHX35Q9H5Z1 703 aaKnown RBP10.37□□□□□ -0.75
VPS28-204ENST00000526054 CCDC86Q9H6F5 360 aaKnown RBP10.37□□□□□ -0.75
VPS28-204ENST00000526054 CATSPERBQ9H7T0 1116 aa10.37□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms