RNA–Protein interactions for RNA: ENST00000525688.5

CD44-220, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 560 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-220ENST00000525688 KRTAP4-8Q9BYQ9 185 aa5.08□□□□□ -1.6
CD44-220ENST00000525688 TXLNGYQ9BZA5 131 aa5.08□□□□□ -1.6
CD44-220ENST00000525688 GHITMQ9H3K2 345 aa5.08□□□□□ -1.6
CD44-220ENST00000525688 MMRN2Q9H8L6 949 aa5.08□□□□□ -1.6
CD44-220ENST00000525688 SYNPO2LQ9H987 977 aa5.08□□□□□ -1.6
CD44-220ENST00000525688 TRPV4Q9HBA0 871 aa5.08□□□□□ -1.6
CD44-220ENST00000525688 PDE11AQ9HCR9 933 aa5.08□□□□□ -1.6
CD44-220ENST00000525688 SLC22A11Q9NSA0 550 aa5.08□□□□□ -1.6
CD44-220ENST00000525688 ZHX1Q9UKY1 873 aaPredicted RBP5.08□□□□□ -1.6
CD44-220ENST00000525688 SMC3Q9UQE7 1217 aa5.08□□□□□ -1.6
CD44-220ENST00000525688 GDAQ9Y2T3 454 aa5.08□□□□□ -1.6
CD44-220ENST00000525688 KNSTRNQ9Y448 316 aa5.08□□□□□ -1.6
CD44-220ENST00000525688 ATP6V0A2Q9Y487 856 aa5.08□□□□□ -1.6
CD44-220ENST00000525688 COPG1Q9Y678 874 aaKnown RBP5.08□□□□□ -1.6
CD44-220ENST00000525688 CPS1P31327 1500 aa5.07□□□□□ -1.6
CD44-220ENST00000525688 SPATA31E1Q6ZUB1 1445 aa5.07□□□□□ -1.6
CD44-220ENST00000525688 ADAMTS13Q76LX8 1427 aa5.07□□□□□ -1.6
CD44-220ENST00000525688 TMEM110-MUSTN1A8MSY1 372 aa5.07□□□□□ -1.6
CD44-220ENST00000525688 NARSO43776 548 aaKnown RBP5.07□□□□□ -1.6
CD44-220ENST00000525688 HNRNPA1P09651 372 aaKnown RBP eCLIP5.07□□□□□ -1.6
CD44-220ENST00000525688 CCDC159P0C7I6 412 aa5.07□□□□□ -1.6
CD44-220ENST00000525688 EBLN1P0CF75 366 aa5.07□□□□□ -1.6
CD44-220ENST00000525688 CPA1P15085 419 aa5.07□□□□□ -1.6
CD44-220ENST00000525688 ALOX12P18054 663 aa5.07□□□□□ -1.6
CD44-220ENST00000525688 CXCR5P32302 372 aa5.07□□□□□ -1.6
CD44-220ENST00000525688 CCT8P50990 548 aa5.07□□□□□ -1.6
CD44-220ENST00000525688 TBL3Q12788 808 aaKnown RBP5.07□□□□□ -1.6
CD44-220ENST00000525688 SLMAPQ14BN4 828 aa5.07□□□□□ -1.6
CD44-220ENST00000525688 PCID2Q5JVF3 399 aa5.07□□□□□ -1.6
CD44-220ENST00000525688 GALNT17Q6IS24 598 aa5.07□□□□□ -1.6
CD44-220ENST00000525688 ACAD10Q6JQN1 1059 aa5.07□□□□□ -1.6
CD44-220ENST00000525688 SLC39A5Q6ZMH5 540 aa5.07□□□□□ -1.6
CD44-220ENST00000525688 SYNE3Q6ZMZ3 975 aa5.07□□□□□ -1.6
CD44-220ENST00000525688 BTN2A1Q7KYR7 527 aa5.07□□□□□ -1.6
CD44-220ENST00000525688 BCDIN3DQ7Z5W3 292 aaKnown RBP5.07□□□□□ -1.6
CD44-220ENST00000525688 EPHX4Q8IUS5 362 aa5.07□□□□□ -1.6
CD44-220ENST00000525688 ULK2Q8IYT8 1036 aa5.07□□□□□ -1.6
CD44-220ENST00000525688 TCP11L2Q8N4U5 519 aa5.07□□□□□ -1.6
CD44-220ENST00000525688 CAVIN3Q969G5 261 aa5.07□□□□□ -1.6
CD44-220ENST00000525688 MASTLQ96GX5 879 aa5.07□□□□□ -1.6
CD44-220ENST00000525688 RBM17Q96I25 401 aaKnown RBP5.07□□□□□ -1.6
CD44-220ENST00000525688 SPATA17Q96L03 361 aa5.07□□□□□ -1.6
CD44-220ENST00000525688 TIGD1Q96MW7 591 aa5.07□□□□□ -1.6
CD44-220ENST00000525688 JAKMIP1Q96N16 626 aaKnown RBP5.07□□□□□ -1.6
CD44-220ENST00000525688 BBC3Q96PG8 261 aaPredicted RBP5.07□□□□□ -1.6
CD44-220ENST00000525688 TSGA13Q96PP4 275 aa5.07□□□□□ -1.6
CD44-220ENST00000525688 KRTAP4-12Q9BQ66 201 aa5.07□□□□□ -1.6
CD44-220ENST00000525688 FUZQ9BT04 418 aa5.07□□□□□ -1.6
CD44-220ENST00000525688 PHF7Q9BWX1 381 aaPredicted RBP5.07□□□□□ -1.6
CD44-220ENST00000525688 ORC3Q9UBD5 711 aaPredicted RBP5.07□□□□□ -1.6
CD44-220ENST00000525688 CD207Q9UJ71 328 aa5.07□□□□□ -1.6
CD44-220ENST00000525688 VPS4AQ9UN37 437 aa5.07□□□□□ -1.6
CD44-220ENST00000525688 CYP46A1Q9Y6A2 500 aa5.07□□□□□ -1.6
CD44-220ENST00000525688 NEXMIFQ5QGS0 1516 aa5.07□□□□□ -1.6
CD44-220ENST00000525688 CCDC144AA2RUR9 1427 aa5.06□□□□□ -1.6
CD44-220ENST00000525688 STRCP1A6NGW2 1772 aa5.06□□□□□ -1.6
CD44-220ENST00000525688 ANKRD30BQ9BXX2 1392 aa5.06□□□□□ -1.6
CD44-220ENST00000525688 TTC34A8MYJ7 566 aa5.06□□□□□ -1.6
CD44-220ENST00000525688 PI4K2BG5E9Z4 385 aa5.06□□□□□ -1.6
CD44-220ENST00000525688 GRM8O00222 908 aa5.06□□□□□ -1.6
CD44-220ENST00000525688 ZNF213O14771 459 aa5.06□□□□□ -1.6
CD44-220ENST00000525688 TMEM63AO94886 807 aa5.06□□□□□ -1.6
CD44-220ENST00000525688 KAT7O95251 611 aa5.06□□□□□ -1.6
CD44-220ENST00000525688 PDE8BO95263 885 aa5.06□□□□□ -1.6
CD44-220ENST00000525688 STARD3NLO95772 234 aa5.06□□□□□ -1.6
CD44-220ENST00000525688 MT-CO3P00414 261 aa5.06□□□□□ -1.6
CD44-220ENST00000525688 MT-ND3P03897 115 aa5.06□□□□□ -1.6
CD44-220ENST00000525688 PEPDP12955 493 aa5.06□□□□□ -1.6
CD44-220ENST00000525688 DRD4P21917 467 aa5.06□□□□□ -1.6
CD44-220ENST00000525688 SLC8A1P32418 973 aa5.06□□□□□ -1.6
CD44-220ENST00000525688 PGM1P36871 562 aa5.06□□□□□ -1.6
CD44-220ENST00000525688 CD86P42081 329 aa5.06□□□□□ -1.6
CD44-220ENST00000525688 AGTR2P50052 363 aa5.06□□□□□ -1.6
CD44-220ENST00000525688 COPB1P53618 953 aaKnown RBP5.06□□□□□ -1.6
CD44-220ENST00000525688 CASP6P55212 293 aa5.06□□□□□ -1.6
CD44-220ENST00000525688 WDR5P61964 334 aaKnown RBP5.06□□□□□ -1.6
CD44-220ENST00000525688 CDK18Q07002 472 aa5.06□□□□□ -1.6
CD44-220ENST00000525688 GAB1Q13480 694 aa5.06□□□□□ -1.6
CD44-220ENST00000525688 KRT32Q14532 448 aa5.06□□□□□ -1.6
CD44-220ENST00000525688 ASIC2Q16515 512 aa5.06□□□□□ -1.6
CD44-220ENST00000525688 LAIR1Q6GTX8 287 aa5.06□□□□□ -1.6
CD44-220ENST00000525688 KLHL10Q6JEL2 608 aa5.06□□□□□ -1.6
CD44-220ENST00000525688 RPUSD3Q6P087 351 aaKnown RBP5.06□□□□□ -1.6
CD44-220ENST00000525688 KIAA1324Q6UXG2 1013 aaKnown RBP5.06□□□□□ -1.6
CD44-220ENST00000525688 VRK3Q8IV63 474 aa5.06□□□□□ -1.6
CD44-220ENST00000525688 TERB1Q8NA31 727 aa5.06□□□□□ -1.6
CD44-220ENST00000525688 BEND2Q8NDZ0 799 aa5.06□□□□□ -1.6
CD44-220ENST00000525688 AKAP1Q92667 903 aaKnown RBP eCLIP5.06□□□□□ -1.6
CD44-220ENST00000525688 ZUFSPQ96AP4 578 aa5.06□□□□□ -1.6
CD44-220ENST00000525688 C7orf26Q96N11 449 aa5.06□□□□□ -1.6
CD44-220ENST00000525688 MMS19Q96T76 1030 aa5.06□□□□□ -1.6
CD44-220ENST00000525688 SLX1AQ9BQ83 275 aa5.06□□□□□ -1.6
CD44-220ENST00000525688 GPATCH1Q9BRR8 931 aaKnown RBP5.06□□□□□ -1.6
CD44-220ENST00000525688 PI4K2AQ9BTU6 479 aa5.06□□□□□ -1.6
CD44-220ENST00000525688 HTATIP2Q9BUP3 242 aa5.06□□□□□ -1.6
CD44-220ENST00000525688 CIPCQ9C0C6 399 aa5.06□□□□□ -1.6
CD44-220ENST00000525688 TAOK3Q9H2K8 898 aa5.06□□□□□ -1.6
CD44-220ENST00000525688 PRDM13Q9H4Q3 707 aa5.06□□□□□ -1.6
CD44-220ENST00000525688 ASIC5Q9NY37 505 aa5.06□□□□□ -1.6
CD44-220ENST00000525688 MTMR4Q9NYA4 1195 aa5.06□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms