RNA–Protein interactions for RNA: ENST00000513960.5

VCAN-210, Transcript of versican, humanhuman

TSL 1 (best)

Gene VCAN, Length 3,973 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-210ENST00000513960 ADCYAP1R1P41586 468 aa9.8□□□□□ -0.84
VCAN-210ENST00000513960 IRF9Q00978 393 aa9.8□□□□□ -0.84
VCAN-210ENST00000513960 OLIG2Q13516 323 aa9.8□□□□□ -0.84
VCAN-210ENST00000513960 PGM2L1Q6PCE3 622 aa9.8□□□□□ -0.84
VCAN-210ENST00000513960 CATSPER4Q7RTX7 472 aa9.8□□□□□ -0.84
VCAN-210ENST00000513960 PID1Q7Z2X4 250 aa9.8□□□□□ -0.84
VCAN-210ENST00000513960 PLD5Q8N7P1 536 aa9.8□□□□□ -0.84
VCAN-210ENST00000513960 PPTC7Q8NI37 304 aa9.8□□□□□ -0.84
VCAN-210ENST00000513960 C12orf43Q96C57 262 aaKnown RBP9.8□□□□□ -0.84
VCAN-210ENST00000513960 TBCBQ99426 244 aa9.8□□□□□ -0.84
VCAN-210ENST00000513960 APBA2Q99767 749 aa9.8□□□□□ -0.84
VCAN-210ENST00000513960 GBA2Q9HCG7 927 aaPredicted RBP9.8□□□□□ -0.84
VCAN-210ENST00000513960 CYP4F12Q9HCS2 524 aa9.8□□□□□ -0.84
VCAN-210ENST00000513960 SNX15Q9NRS6 342 aa9.8□□□□□ -0.84
VCAN-210ENST00000513960 KLHL8Q9P2G9 620 aaPredicted RBP9.8□□□□□ -0.84
VCAN-210ENST00000513960 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP9.79□□□□□ -0.84
VCAN-210ENST00000513960 KCNU1A8MYU2 1149 aa9.79□□□□□ -0.84
VCAN-210ENST00000513960 TRIM13O60858 407 aa9.79□□□□□ -0.84
VCAN-210ENST00000513960 CBFA2T3O75081 653 aa9.79□□□□□ -0.84
VCAN-210ENST00000513960 ALDOAP04075 364 aaKnown RBP9.79□□□□□ -0.84
VCAN-210ENST00000513960 CYP2F1P24903 491 aa9.79□□□□□ -0.84
VCAN-210ENST00000513960 KPNA1P52294 538 aaPredicted RBP9.79□□□□□ -0.84
VCAN-210ENST00000513960 SLC6A3Q01959 620 aa9.79□□□□□ -0.84
VCAN-210ENST00000513960 GNA12Q03113 381 aa9.79□□□□□ -0.84
VCAN-210ENST00000513960 C1QTNF12Q5T7M4 302 aa9.79□□□□□ -0.84
VCAN-210ENST00000513960 PMF1Q6P1K2 205 aa9.79□□□□□ -0.84
VCAN-210ENST00000513960 CHST15Q7LFX5 561 aaPredicted RBP9.79□□□□□ -0.84
VCAN-210ENST00000513960 BEST2Q8NFU1 509 aa9.79□□□□□ -0.84
VCAN-210ENST00000513960 EXT2Q93063 718 aa9.79□□□□□ -0.84
VCAN-210ENST00000513960 FAM49AQ9H0Q0 323 aaPredicted RBP9.79□□□□□ -0.84
VCAN-210ENST00000513960 FAIMQ9NVQ4 179 aa9.79□□□□□ -0.84
VCAN-210ENST00000513960 UTRNP46939 3433 aa9.79□□□□□ -0.84
VCAN-210ENST00000513960 LOC285556D6RIA3 1793 aa9.79□□□□□ -0.84
VCAN-210ENST00000513960 LSM1O15116 133 aaKnown RBP9.79□□□□□ -0.84
VCAN-210ENST00000513960 ENDOD1O94919 500 aa9.79□□□□□ -0.84
VCAN-210ENST00000513960 ITGBL1O95965 494 aaPredicted RBP9.79□□□□□ -0.84
VCAN-210ENST00000513960 CYP3A5P20815 502 aa9.79□□□□□ -0.84
VCAN-210ENST00000513960 CDH3P22223 829 aa9.79□□□□□ -0.84
VCAN-210ENST00000513960 GRM5P41594 1212 aa9.79□□□□□ -0.84
VCAN-210ENST00000513960 YAP1P46937 504 aaKnown RBP9.79□□□□□ -0.84
VCAN-210ENST00000513960 PCYT1AP49585 367 aa9.79□□□□□ -0.84
VCAN-210ENST00000513960 CA9Q16790 459 aa9.79□□□□□ -0.84
VCAN-210ENST00000513960 KIZQ2M2Z5 673 aa9.79□□□□□ -0.84
VCAN-210ENST00000513960 DCAF4L1Q3SXM0 396 aa9.79□□□□□ -0.84
VCAN-210ENST00000513960 AGKQ53H12 422 aa9.79□□□□□ -0.84
VCAN-210ENST00000513960 C6orf183Q5T699 404 aa9.79□□□□□ -0.84
VCAN-210ENST00000513960 HERC6Q8IVU3 1022 aa9.79□□□□□ -0.84
VCAN-210ENST00000513960 TMCO5AQ8N6Q1 288 aa9.79□□□□□ -0.84
VCAN-210ENST00000513960 KLHL32Q96NJ5 620 aa9.79□□□□□ -0.84
VCAN-210ENST00000513960 OMDQ99983 421 aa9.79□□□□□ -0.84
VCAN-210ENST00000513960 GPATCH1Q9BRR8 931 aaKnown RBP9.79□□□□□ -0.84
VCAN-210ENST00000513960 DNAI2Q9GZS0 605 aa9.79□□□□□ -0.84
VCAN-210ENST00000513960 KLHL25Q9H0H3 589 aa9.79□□□□□ -0.84
VCAN-210ENST00000513960 ZNF696Q9H7X3 374 aa9.79□□□□□ -0.84
VCAN-210ENST00000513960 TRPC7Q9HCX4 862 aa9.79□□□□□ -0.84
VCAN-210ENST00000513960 GID8Q9NWU2 228 aa9.79□□□□□ -0.84
VCAN-210ENST00000513960 SNTG2Q9NY99 539 aa9.79□□□□□ -0.84
VCAN-210ENST00000513960 COL1A2P08123 1366 aa9.79□□□□□ -0.84
VCAN-210ENST00000513960 MCM3APO60318 1980 aa9.79□□□□□ -0.84
VCAN-210ENST00000513960 STAU1O95793 577 aaKnown RBP9.79□□□□□ -0.84
VCAN-210ENST00000513960 LTFP02788 710 aa9.79□□□□□ -0.84
VCAN-210ENST00000513960 CDK9P50750 372 aaKnown RBP9.79□□□□□ -0.84
VCAN-210ENST00000513960 SULT2A1Q06520 285 aa9.79□□□□□ -0.84
VCAN-210ENST00000513960 GRIK4Q16099 956 aa9.79□□□□□ -0.84
VCAN-210ENST00000513960 KIF19Q2TAC6 998 aa9.79□□□□□ -0.84
VCAN-210ENST00000513960 TRNP1Q6NT89 227 aa9.79□□□□□ -0.84
VCAN-210ENST00000513960 SH2D5Q6ZV89 423 aa9.79□□□□□ -0.84
VCAN-210ENST00000513960 DPP9Q86TI2 863 aa9.79□□□□□ -0.84
VCAN-210ENST00000513960 SIX6OS1Q8N1H7 587 aa9.79□□□□□ -0.84
VCAN-210ENST00000513960 PLD6Q8N2A8 252 aaKnown RBP9.79□□□□□ -0.84
VCAN-210ENST00000513960 COLGALT1Q8NBJ5 622 aa9.79□□□□□ -0.84
VCAN-210ENST00000513960 RIN3Q8TB24 985 aa9.79□□□□□ -0.84
VCAN-210ENST00000513960 PBXIP1Q96AQ6 731 aa9.79□□□□□ -0.84
VCAN-210ENST00000513960 SLC10A4Q96EP9 437 aa9.79□□□□□ -0.84
VCAN-210ENST00000513960 MRPL45Q9BRJ2 306 aaKnown RBP9.79□□□□□ -0.84
VCAN-210ENST00000513960 SNRNP25Q9BV90 132 aaKnown RBP9.79□□□□□ -0.84
VCAN-210ENST00000513960 EPB41L1Q9H4G0 881 aa9.79□□□□□ -0.84
VCAN-210ENST00000513960 CLK4Q9HAZ1 481 aaKnown RBP9.79□□□□□ -0.84
VCAN-210ENST00000513960 PCDH18Q9HCL0 1135 aa9.79□□□□□ -0.84
VCAN-210ENST00000513960 PNPLA3Q9NST1 481 aa9.79□□□□□ -0.84
VCAN-210ENST00000513960 DAPK2Q9UIK4 370 aa9.79□□□□□ -0.84
VCAN-210ENST00000513960 PRPF19Q9UMS4 504 aaKnown RBP9.79□□□□□ -0.84
VCAN-210ENST00000513960 PTPRFP10586 1907 aa9.79□□□□□ -0.84
VCAN-210ENST00000513960 TK2O00142 265 aa9.78□□□□□ -0.84
VCAN-210ENST00000513960 FBP2O00757 339 aa9.78□□□□□ -0.84
VCAN-210ENST00000513960 MYL4P12829 197 aa9.78□□□□□ -0.84
VCAN-210ENST00000513960 TPH1P17752 444 aa9.78□□□□□ -0.84
VCAN-210ENST00000513960 HDCP19113 662 aa9.78□□□□□ -0.84
VCAN-210ENST00000513960 UGT1A6P19224 532 aa9.78□□□□□ -0.84
VCAN-210ENST00000513960 UGT1A1P22309 533 aa9.78□□□□□ -0.84
VCAN-210ENST00000513960 UGT1A4P22310 534 aa9.78□□□□□ -0.84
VCAN-210ENST00000513960 VARSP26640 1264 aaKnown RBP9.78□□□□□ -0.84
VCAN-210ENST00000513960 UGT1A3P35503 534 aa9.78□□□□□ -0.84
VCAN-210ENST00000513960 UGT1A5P35504 534 aa9.78□□□□□ -0.84
VCAN-210ENST00000513960 GRIA3P42263 894 aa9.78□□□□□ -0.84
VCAN-210ENST00000513960 HALP42357 657 aa9.78□□□□□ -0.84
VCAN-210ENST00000513960 PSME3P61289 254 aa9.78□□□□□ -0.84
VCAN-210ENST00000513960 USP10Q14694 798 aaKnown RBP9.78□□□□□ -0.84
VCAN-210ENST00000513960 CARTPTQ16568 116 aa9.78□□□□□ -0.84
VCAN-210ENST00000513960 MGAT5BQ3V5L5 792 aa9.78□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms