RNA–Protein interactions for RNA: ENST00000513803.5

NFKB1-211, Transcript of nuclear factor kappa B subunit 1, human

TSL 4

Gene NFKB1, Length 612 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NFKB1-211	ENST00000513803	RPLP0	P05388	317 aa	Known RBP	11.11	□□□□□ -0.63
NFKB1-211	ENST00000513803	SETSIP	P0DME0	302 aa		11.11	□□□□□ -0.63
NFKB1-211	ENST00000513803	CHRNA3	P32297	505 aa		11.11	□□□□□ -0.63
NFKB1-211	ENST00000513803	NUMB	P49757	651 aa		11.11	□□□□□ -0.63
NFKB1-211	ENST00000513803	ATP1A2	P50993	1020 aa		11.11	□□□□□ -0.63
NFKB1-211	ENST00000513803	CCL7	P80098	99 aa		11.11	□□□□□ -0.63
NFKB1-211	ENST00000513803	NNT	Q13423	1086 aa		11.11	□□□□□ -0.63
NFKB1-211	ENST00000513803	C1orf61	Q13536	156 aa		11.11	□□□□□ -0.63
NFKB1-211	ENST00000513803	SLC39A14	Q15043	492 aa		11.11	□□□□□ -0.63
NFKB1-211	ENST00000513803	E2F4	Q16254	413 aa		11.11	□□□□□ -0.63
NFKB1-211	ENST00000513803	C1orf220	Q5T0J3	134 aa		11.11	□□□□□ -0.63
NFKB1-211	ENST00000513803	CEP135	Q66GS9	1140 aa		11.11	□□□□□ -0.63
NFKB1-211	ENST00000513803	KIAA1161	Q6NSJ0	714 aa		11.11	□□□□□ -0.63
NFKB1-211	ENST00000513803	ERN2	Q76MJ5	926 aa	Known RBP	11.11	□□□□□ -0.63
NFKB1-211	ENST00000513803	OR6C4	Q8NGE1	309 aa		11.11	□□□□□ -0.63
NFKB1-211	ENST00000513803	UBA3	Q8TBC4	463 aa		11.11	□□□□□ -0.63
NFKB1-211	ENST00000513803	TMX3	Q96JJ7	454 aa		11.11	□□□□□ -0.63
NFKB1-211	ENST00000513803	TBATA	Q96M53	351 aa		11.11	□□□□□ -0.63
NFKB1-211	ENST00000513803	HDAC8	Q9BY41	377 aa		11.11	□□□□□ -0.63
NFKB1-211	ENST00000513803	SLC13A1	Q9BZW2	595 aa		11.11	□□□□□ -0.63
NFKB1-211	ENST00000513803	APOBEC3B	Q9UH17	382 aa	Known RBP	11.11	□□□□□ -0.63
NFKB1-211	ENST00000513803	DOLK	Q9UPQ8	538 aa		11.11	□□□□□ -0.63
NFKB1-211	ENST00000513803	ZSCAN21	Q9Y5A6	473 aa	Predicted RBP	11.11	□□□□□ -0.63
NFKB1-211	ENST00000513803	MORC2	Q9Y6X9	1032 aa	Predicted RBP	11.11	□□□□□ -0.63
NFKB1-211	ENST00000513803		F5H5T6	163 aa		11.1	□□□□□ -0.63
NFKB1-211	ENST00000513803	STMND1	H3BQB6	276 aa		11.1	□□□□□ -0.63
NFKB1-211	ENST00000513803		M0QYT0	321 aa		11.1	□□□□□ -0.63
NFKB1-211	ENST00000513803	PDXK	O00764	312 aa		11.1	□□□□□ -0.63
NFKB1-211	ENST00000513803	APOE	P02649	317 aa		11.1	□□□□□ -0.63
NFKB1-211	ENST00000513803	NR3C1	P04150	777 aa		11.1	□□□□□ -0.63
NFKB1-211	ENST00000513803	ITIH1	P19827	911 aa		11.1	□□□□□ -0.63
NFKB1-211	ENST00000513803	TACR2	P21452	398 aa		11.1	□□□□□ -0.63
NFKB1-211	ENST00000513803	THOP1	P52888	689 aa		11.1	□□□□□ -0.63
NFKB1-211	ENST00000513803	MAPK10	P53779	464 aa		11.1	□□□□□ -0.63
NFKB1-211	ENST00000513803	EIF2B5	Q13144	721 aa	Known RBP	11.1	□□□□□ -0.63
NFKB1-211	ENST00000513803	FHL5	Q5TD97	284 aa		11.1	□□□□□ -0.63
NFKB1-211	ENST00000513803	FAXC	Q5TGI0	409 aa		11.1	□□□□□ -0.63
NFKB1-211	ENST00000513803	TTC39B	Q5VTQ0	682 aa	Predicted RBP	11.1	□□□□□ -0.63
NFKB1-211	ENST00000513803	RAP1GAP2	Q684P5	730 aa		11.1	□□□□□ -0.63
NFKB1-211	ENST00000513803	CRYBG3	Q68DQ2	2970 aa		11.1	□□□□□ -0.63
NFKB1-211	ENST00000513803	LVRN	Q6Q4G3	990 aa		11.1	□□□□□ -0.63
NFKB1-211	ENST00000513803	ZSCAN30	Q86W11	494 aa		11.1	□□□□□ -0.63
NFKB1-211	ENST00000513803	CHSY1	Q86X52	802 aa		11.1	□□□□□ -0.63
NFKB1-211	ENST00000513803	CCAR2	Q8N163	923 aa	Known RBP	11.1	□□□□□ -0.63
NFKB1-211	ENST00000513803	SDR16C5	Q8N3Y7	309 aa		11.1	□□□□□ -0.63
NFKB1-211	ENST00000513803	ARL10	Q8N8L6	244 aa		11.1	□□□□□ -0.63
NFKB1-211	ENST00000513803	GPBAR1	Q8TDU6	330 aa		11.1	□□□□□ -0.63
NFKB1-211	ENST00000513803	CCDC74A	Q96AQ1	378 aa		11.1	□□□□□ -0.63
NFKB1-211	ENST00000513803	DHX58	Q96C10	678 aa		11.1	□□□□□ -0.63
NFKB1-211	ENST00000513803	SLC39A13	Q96H72	371 aa		11.1	□□□□□ -0.63
NFKB1-211	ENST00000513803	PPP1R16A	Q96I34	528 aa		11.1	□□□□□ -0.63
NFKB1-211	ENST00000513803	LENG8	Q96PV6	779 aa	Predicted RBP	11.1	□□□□□ -0.63
NFKB1-211	ENST00000513803	FEM1A	Q9BSK4	669 aa		11.1	□□□□□ -0.63
NFKB1-211	ENST00000513803	CPEB1	Q9BZB8	566 aa	Known RBP	11.1	□□□□□ -0.63
NFKB1-211	ENST00000513803	LRRN3	Q9H3W5	708 aa		11.1	□□□□□ -0.63
NFKB1-211	ENST00000513803	FOXJ2	Q9P0K8	574 aa		11.1	□□□□□ -0.63
NFKB1-211	ENST00000513803	SLC12A6	Q9UHW9	1150 aa		11.1	□□□□□ -0.63
NFKB1-211	ENST00000513803	LRRK1	Q38SD2	2015 aa		11.09	□□□□□ -0.63
NFKB1-211	ENST00000513803		A0A1W2PQM1	296 aa		11.09	□□□□□ -0.63
NFKB1-211	ENST00000513803	VPS37C	A5D8V6	355 aa	Predicted RBP	11.09	□□□□□ -0.63
NFKB1-211	ENST00000513803	MAPK13	O15264	365 aa		11.09	□□□□□ -0.63
NFKB1-211	ENST00000513803	RAD51B	O15315	384 aa		11.09	□□□□□ -0.63
NFKB1-211	ENST00000513803	SPINT1	O43278	529 aa		11.09	□□□□□ -0.63
NFKB1-211	ENST00000513803	CTSL	P07711	333 aa		11.09	□□□□□ -0.63
NFKB1-211	ENST00000513803	KRT13	P13646	458 aa		11.09	□□□□□ -0.63
NFKB1-211	ENST00000513803	CD19	P15391	556 aa		11.09	□□□□□ -0.63
NFKB1-211	ENST00000513803	TSHR	P16473	764 aa		11.09	□□□□□ -0.63
NFKB1-211	ENST00000513803	ZFP36L1	Q07352	338 aa	Known RBP	11.09	□□□□□ -0.63
NFKB1-211	ENST00000513803	PPP3CA	Q08209	521 aa		11.09	□□□□□ -0.63
NFKB1-211	ENST00000513803	KLRB1	Q12918	225 aa		11.09	□□□□□ -0.63
NFKB1-211	ENST00000513803	ELOC	Q15369	112 aa		11.09	□□□□□ -0.63
NFKB1-211	ENST00000513803	RABGAP1L	Q5R372	815 aa		11.09	□□□□□ -0.63
NFKB1-211	ENST00000513803	INTS8	Q75QN2	995 aa	Known RBP	11.09	□□□□□ -0.63
NFKB1-211	ENST00000513803	PHACTR4	Q8IZ21	702 aa		11.09	□□□□□ -0.63
NFKB1-211	ENST00000513803	RBFA	Q8N0V3	343 aa		11.09	□□□□□ -0.63
NFKB1-211	ENST00000513803	SH2D3C	Q8N5H7	860 aa		11.09	□□□□□ -0.63
NFKB1-211	ENST00000513803	DQX1	Q8TE96	717 aa	Known RBP	11.09	□□□□□ -0.63
NFKB1-211	ENST00000513803	SSC4D	Q8WTU2	575 aa		11.09	□□□□□ -0.63
NFKB1-211	ENST00000513803	BTN2A3P	Q96KV6	586 aa		11.09	□□□□□ -0.63
NFKB1-211	ENST00000513803	PHF12	Q96QT6	1004 aa		11.09	□□□□□ -0.63
NFKB1-211	ENST00000513803	EPAS1	Q99814	870 aa		11.09	□□□□□ -0.63
NFKB1-211	ENST00000513803	MAGEF1	Q9HAY2	307 aa		11.09	□□□□□ -0.63
NFKB1-211	ENST00000513803	AKAP7	Q9P0M2	348 aa	Predicted RBP	11.09	□□□□□ -0.63
NFKB1-211	ENST00000513803	VPS28	Q9UK41	221 aa		11.09	□□□□□ -0.63
NFKB1-211	ENST00000513803	KIAA1257	Q9ULG3	409 aa		11.09	□□□□□ -0.63
NFKB1-211	ENST00000513803	SETD2	Q9BYW2	2564 aa	Predicted RBP	11.09	□□□□□ -0.63
NFKB1-211	ENST00000513803	TCAF2	A6NFQ2	919 aa		11.08	□□□□□ -0.64
NFKB1-211	ENST00000513803	C9orf172	C9J069	976 aa		11.08	□□□□□ -0.64
NFKB1-211	ENST00000513803	CAPN5	O15484	640 aa	Predicted RBP	11.08	□□□□□ -0.64
NFKB1-211	ENST00000513803	MTSS1	O43312	755 aa		11.08	□□□□□ -0.64
NFKB1-211	ENST00000513803	VPS4B	O75351	444 aa		11.08	□□□□□ -0.64
NFKB1-211	ENST00000513803	FBXO21	O94952	628 aa		11.08	□□□□□ -0.64
NFKB1-211	ENST00000513803	VDR	P11473	427 aa		11.08	□□□□□ -0.64
NFKB1-211	ENST00000513803	PDIA4	P13667	645 aa	Known RBP	11.08	□□□□□ -0.64
NFKB1-211	ENST00000513803	ELAVL4	P26378	380 aa	Known RBP	11.08	□□□□□ -0.64
NFKB1-211	ENST00000513803	ETV5	P41161	510 aa		11.08	□□□□□ -0.64
NFKB1-211	ENST00000513803	RECQL	P46063	649 aa	Predicted RBP	11.08	□□□□□ -0.64
NFKB1-211	ENST00000513803	RGS7	P49802	495 aa		11.08	□□□□□ -0.64
NFKB1-211	ENST00000513803	BLK	P51451	505 aa		11.08	□□□□□ -0.64
NFKB1-211	ENST00000513803	NEK3	P51956	506 aa		11.08	□□□□□ -0.64

Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms