RNA–Protein interactions for RNA: ENST00000513562.1

DDX41-216, Transcript of DEAD-box helicase 41, humanhuman

TSL 4

Gene DDX41, Length 552 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41-216ENST00000513562 SLC25A18Q9H1K4 315 aa11.21□□□□□ -0.61
DDX41-216ENST00000513562 UPF2Q9HAU5 1272 aaKnown RBP11.21□□□□□ -0.61
DDX41-216ENST00000513562 DYRK4Q9NR20 520 aa11.21□□□□□ -0.61
DDX41-216ENST00000513562 WDR70Q9NW82 654 aa11.21□□□□□ -0.61
DDX41-216ENST00000513562 MAPK8IP1Q9UQF2 711 aa11.21□□□□□ -0.61
DDX41-216ENST00000513562 FARP1Q9Y4F1 1045 aaPredicted RBP11.21□□□□□ -0.61
DDX41-216ENST00000513562 PCDHGA4Q9Y5G9 962 aa11.21□□□□□ -0.61
DDX41-216ENST00000513562 CLEC18AA5D8T8 446 aa11.2□□□□□ -0.62
DDX41-216ENST00000513562 SPINT1O43278 529 aa11.2□□□□□ -0.62
DDX41-216ENST00000513562 PRNPP04156 253 aa11.2□□□□□ -0.62
DDX41-216ENST00000513562 SRCP12931 536 aa11.2□□□□□ -0.62
DDX41-216ENST00000513562 CR2P20023 1033 aa11.2□□□□□ -0.62
DDX41-216ENST00000513562 TBXAS1P24557 533 aaPredicted RBP11.2□□□□□ -0.62
DDX41-216ENST00000513562 UGT1A5P35504 534 aa11.2□□□□□ -0.62
DDX41-216ENST00000513562 RPS21P63220 83 aaKnown RBP11.2□□□□□ -0.62
DDX41-216ENST00000513562 CENPCQ03188 943 aa11.2□□□□□ -0.62
DDX41-216ENST00000513562 EIF2B5Q13144 721 aaKnown RBP11.2□□□□□ -0.62
DDX41-216ENST00000513562 PDE1CQ14123 709 aaPredicted RBP11.2□□□□□ -0.62
DDX41-216ENST00000513562 EDRF1Q3B7T1 1238 aa11.2□□□□□ -0.62
DDX41-216ENST00000513562 FBXL22Q6P050 247 aa11.2□□□□□ -0.62
DDX41-216ENST00000513562 TMEM270Q6UE05 265 aa11.2□□□□□ -0.62
DDX41-216ENST00000513562 CLEC18BQ6UXF7 455 aa11.2□□□□□ -0.62
DDX41-216ENST00000513562 RAB11FIP2Q7L804 512 aa11.2□□□□□ -0.62
DDX41-216ENST00000513562 B3GNT8Q7Z7M8 397 aa11.2□□□□□ -0.62
DDX41-216ENST00000513562 JAMLQ86YT9 394 aa11.2□□□□□ -0.62
DDX41-216ENST00000513562 ATP6V0D2Q8N8Y2 350 aa11.2□□□□□ -0.62
DDX41-216ENST00000513562 CLEC18CQ8NCF0 446 aa11.2□□□□□ -0.62
DDX41-216ENST00000513562 GLMNQ92990 594 aa11.2□□□□□ -0.62
DDX41-216ENST00000513562 RNF34Q969K3 372 aa11.2□□□□□ -0.62
DDX41-216ENST00000513562 TBATAQ96M53 351 aa11.2□□□□□ -0.62
DDX41-216ENST00000513562 SLC17A9Q9BYT1 436 aa11.2□□□□□ -0.62
DDX41-216ENST00000513562 EPB41L5Q9HCM4 733 aa11.2□□□□□ -0.62
DDX41-216ENST00000513562 SLTMQ9NWH9 1034 aaKnown RBP eCLIP11.2□□□□□ -0.62
DDX41-216ENST00000513562 GEMIN8Q9NWZ8 242 aaKnown RBP11.2□□□□□ -0.62
DDX41-216ENST00000513562 SPASTQ9UBP0 616 aa11.2□□□□□ -0.62
DDX41-216ENST00000513562 VPS28Q9UK41 221 aa11.2□□□□□ -0.62
DDX41-216ENST00000513562 TLN1Q9Y490 2541 aaKnown RBP11.2□□□□□ -0.62
DDX41-216ENST00000513562 D6RAR5 112 aa11.19□□□□□ -0.62
DDX41-216ENST00000513562 LMO7DNF2Z398 122 aa11.19□□□□□ -0.62
DDX41-216ENST00000513562 NVLO15381 856 aaKnown RBP11.19□□□□□ -0.62
DDX41-216ENST00000513562 GCATO75600 419 aa11.19□□□□□ -0.62
DDX41-216ENST00000513562 TRUB2O95900 331 aaKnown RBP11.19□□□□□ -0.62
DDX41-216ENST00000513562 PAK4O96013 591 aaPredicted RBP11.19□□□□□ -0.62
DDX41-216ENST00000513562 MT-CO1P00395 513 aa11.19□□□□□ -0.62
DDX41-216ENST00000513562 EPB41P11171 864 aaKnown RBP11.19□□□□□ -0.62
DDX41-216ENST00000513562 BRD2P25440 801 aaKnown RBP11.19□□□□□ -0.62
DDX41-216ENST00000513562 IRAK1P51617 712 aa11.19□□□□□ -0.62
DDX41-216ENST00000513562 PFN3P60673 137 aa11.19□□□□□ -0.62
DDX41-216ENST00000513562 PITX1P78337 314 aaPredicted RBP11.19□□□□□ -0.62
DDX41-216ENST00000513562 MAPK8IP2Q13387 824 aaPredicted RBP11.19□□□□□ -0.62
DDX41-216ENST00000513562 SERINC3Q13530 473 aa11.19□□□□□ -0.62
DDX41-216ENST00000513562 RBFAQ8N0V3 343 aa11.19□□□□□ -0.62
DDX41-216ENST00000513562 ATP11CQ8NB49 1132 aa11.19□□□□□ -0.62
DDX41-216ENST00000513562 CHST14Q8NCH0 376 aa11.19□□□□□ -0.62
DDX41-216ENST00000513562 BTN2A2Q8WVV5 523 aa11.19□□□□□ -0.62
DDX41-216ENST00000513562 HTR3CQ8WXA8 447 aa11.19□□□□□ -0.62
DDX41-216ENST00000513562 PPP1R16AQ96I34 528 aa11.19□□□□□ -0.62
DDX41-216ENST00000513562 RPRD1AQ96P16 312 aaPredicted RBP11.19□□□□□ -0.62
DDX41-216ENST00000513562 LENG8Q96PV6 779 aaPredicted RBP11.19□□□□□ -0.62
DDX41-216ENST00000513562 KLF6Q99612 283 aaPredicted RBP11.19□□□□□ -0.62
DDX41-216ENST00000513562 FUCA2Q9BTY2 467 aa11.19□□□□□ -0.62
DDX41-216ENST00000513562 SYNDIG1Q9H7V2 258 aa11.19□□□□□ -0.62
DDX41-216ENST00000513562 POPDC2Q9HBU9 364 aa11.19□□□□□ -0.62
DDX41-216ENST00000513562 APOBEC3BQ9UH17 382 aaKnown RBP11.19□□□□□ -0.62
DDX41-216ENST00000513562 SLC12A6Q9UHW9 1150 aa11.19□□□□□ -0.62
DDX41-216ENST00000513562 IPO11Q9UI26 975 aaKnown RBP11.19□□□□□ -0.62
DDX41-216ENST00000513562 TBC1D30Q9Y2I9 924 aa11.19□□□□□ -0.62
DDX41-216ENST00000513562 UNC79Q9P2D8 2635 aa11.19□□□□□ -0.62
DDX41-216ENST00000513562 LRRK2Q5S007 2527 aa11.18□□□□□ -0.62
DDX41-216ENST00000513562 NBPF19A0A087WUL8 3843 aa11.18□□□□□ -0.62
DDX41-216ENST00000513562 TMX2-CTNND1H3BSU7 103 aa11.18□□□□□ -0.62
DDX41-216ENST00000513562 K7ERQ8 282 aa11.18□□□□□ -0.62
DDX41-216ENST00000513562 RNF225M0QZC1 329 aaPredicted RBP11.18□□□□□ -0.62
DDX41-216ENST00000513562 FPGTO14772 594 aa11.18□□□□□ -0.62
DDX41-216ENST00000513562 SLC2A3P11169 496 aa11.18□□□□□ -0.62
DDX41-216ENST00000513562 ADRB3P13945 408 aa11.18□□□□□ -0.62
DDX41-216ENST00000513562 HGFP14210 728 aa11.18□□□□□ -0.62
DDX41-216ENST00000513562 WT1P19544 449 aaPredicted RBP11.18□□□□□ -0.62
DDX41-216ENST00000513562 CCKBRP32239 447 aa11.18□□□□□ -0.62
DDX41-216ENST00000513562 GPD2P43304 727 aa11.18□□□□□ -0.62
DDX41-216ENST00000513562 CLCN6P51797 869 aa11.18□□□□□ -0.62
DDX41-216ENST00000513562 NEK3P51956 506 aa11.18□□□□□ -0.62
DDX41-216ENST00000513562 FOXK1P85037 733 aa11.18□□□□□ -0.62
DDX41-216ENST00000513562 LRMPQ12912 555 aa11.18□□□□□ -0.62
DDX41-216ENST00000513562 AUHQ13825 339 aaKnown RBP11.18□□□□□ -0.62
DDX41-216ENST00000513562 MORC3Q14149 939 aa11.18□□□□□ -0.62
DDX41-216ENST00000513562 CLCA4Q14CN2 919 aa11.18□□□□□ -0.62
DDX41-216ENST00000513562 PRRT3Q5FWE3 981 aa11.18□□□□□ -0.62
DDX41-216ENST00000513562 ARSIQ5FYB1 569 aa11.18□□□□□ -0.62
DDX41-216ENST00000513562 DCAF17Q5H9S7 520 aaPredicted RBP11.18□□□□□ -0.62
DDX41-216ENST00000513562 MANEAQ5SRI9 462 aa11.18□□□□□ -0.62
DDX41-216ENST00000513562 VASH2Q86V25 355 aa11.18□□□□□ -0.62
DDX41-216ENST00000513562 ZSCAN30Q86W11 494 aa11.18□□□□□ -0.62
DDX41-216ENST00000513562 ZSCAN1Q8NBB4 408 aa11.18□□□□□ -0.62
DDX41-216ENST00000513562 ZNF564Q8TBZ8 553 aaPredicted RBP11.18□□□□□ -0.62
DDX41-216ENST00000513562 GRIN3AQ8TCU5 1115 aa11.18□□□□□ -0.62
DDX41-216ENST00000513562 PSMB7Q99436 277 aa11.18□□□□□ -0.62
DDX41-216ENST00000513562 LRRC61Q9BV99 259 aa11.18□□□□□ -0.62
DDX41-216ENST00000513562 STRADBQ9C0K7 418 aa11.18□□□□□ -0.62
DDX41-216ENST00000513562 EPN3Q9H201 632 aa11.18□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms