RNA–Protein interactions for RNA: ENST00000493379.1

VPS52-219, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 5

Gene VPS52, Length 786 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-219ENST00000493379 INTUQ9ULD6 942 aa6.96□□□□□ -1.3
VPS52-219ENST00000493379 STAP1Q9ULZ2 295 aa6.96□□□□□ -1.3
VPS52-219ENST00000493379 MYH10P35580 1976 aa6.95□□□□□ -1.3
VPS52-219ENST00000493379 SETD2Q9BYW2 2564 aaPredicted RBP6.95□□□□□ -1.3
VPS52-219ENST00000493379 CXorf51AA0A1B0GTR3 108 aa6.95□□□□□ -1.3
VPS52-219ENST00000493379 M0QYT0 321 aa6.95□□□□□ -1.3
VPS52-219ENST00000493379 TIMM44O43615 452 aa6.95□□□□□ -1.3
VPS52-219ENST00000493379 GRAP2O75791 330 aa6.95□□□□□ -1.3
VPS52-219ENST00000493379 TPM1P09493 284 aa6.95□□□□□ -1.3
VPS52-219ENST00000493379 ADH5P11766 374 aa6.95□□□□□ -1.3
VPS52-219ENST00000493379 TDGF1P13385 188 aa6.95□□□□□ -1.3
VPS52-219ENST00000493379 HNRNPLP14866 589 aaKnown RBP eCLIP6.95□□□□□ -1.3
VPS52-219ENST00000493379 PDGFRAP16234 1089 aa6.95□□□□□ -1.3
VPS52-219ENST00000493379 SLC6A4P31645 630 aa6.95□□□□□ -1.3
VPS52-219ENST00000493379 ADRA1BP35368 520 aa6.95□□□□□ -1.3
VPS52-219ENST00000493379 GRIA2P42262 883 aa6.95□□□□□ -1.3
VPS52-219ENST00000493379 KIR2DL1P43626 348 aaPredicted RBP6.95□□□□□ -1.3
VPS52-219ENST00000493379 LIG3P49916 1009 aa6.95□□□□□ -1.3
VPS52-219ENST00000493379 PLK1P53350 603 aa6.95□□□□□ -1.3
VPS52-219ENST00000493379 AIF1P55008 147 aa6.95□□□□□ -1.3
VPS52-219ENST00000493379 HDAC4P56524 1084 aa6.95□□□□□ -1.3
VPS52-219ENST00000493379 RPL7AP62424 266 aaKnown RBP6.95□□□□□ -1.3
VPS52-219ENST00000493379 GAS6Q14393 721 aa6.95□□□□□ -1.3
VPS52-219ENST00000493379 MPPE1Q53F39 396 aa6.95□□□□□ -1.3
VPS52-219ENST00000493379 ZC3H12AQ5D1E8 599 aaKnown RBP6.95□□□□□ -1.3
VPS52-219ENST00000493379 MS4A13Q5J8X5 152 aa6.95□□□□□ -1.3
VPS52-219ENST00000493379 C10orf76Q5T2E6 689 aa6.95□□□□□ -1.3
VPS52-219ENST00000493379 FAM102AQ5T9C2 384 aaPredicted RBP6.95□□□□□ -1.3
VPS52-219ENST00000493379 MANEALQ5VSG8 457 aa6.95□□□□□ -1.3
VPS52-219ENST00000493379 TCEAL6Q6IPX3 200 aa6.95□□□□□ -1.3
VPS52-219ENST00000493379 C12orf40Q86WS4 652 aa6.95□□□□□ -1.3
VPS52-219ENST00000493379 DENND1CQ8IV53 801 aa6.95□□□□□ -1.3
VPS52-219ENST00000493379 CCDC170Q8IYT3 715 aa6.95□□□□□ -1.3
VPS52-219ENST00000493379 NIPA2Q8N8Q9 360 aa6.95□□□□□ -1.3
VPS52-219ENST00000493379 ATP6V0D2Q8N8Y2 350 aa6.95□□□□□ -1.3
VPS52-219ENST00000493379 PHC3Q8NDX5 983 aa6.95□□□□□ -1.3
VPS52-219ENST00000493379 FIBINQ8TAL6 211 aa6.95□□□□□ -1.3
VPS52-219ENST00000493379 MDM1Q8TC05 714 aa6.95□□□□□ -1.3
VPS52-219ENST00000493379 CD101Q93033 1021 aa6.95□□□□□ -1.3
VPS52-219ENST00000493379 TCEAL3Q969E4 200 aa6.95□□□□□ -1.3
VPS52-219ENST00000493379 NTAN1Q96AB6 310 aa6.95□□□□□ -1.3
VPS52-219ENST00000493379 TMA16Q96EY4 203 aaKnown RBP6.95□□□□□ -1.3
VPS52-219ENST00000493379 CFAP57Q96MR6 1250 aa6.95□□□□□ -1.3
VPS52-219ENST00000493379 PNKPQ96T60 521 aa6.95□□□□□ -1.3
VPS52-219ENST00000493379 TBCBQ99426 244 aa6.95□□□□□ -1.3
VPS52-219ENST00000493379 P2RY13Q9BPV8 354 aa6.95□□□□□ -1.3
VPS52-219ENST00000493379 NCAPGQ9BPX3 1015 aa6.95□□□□□ -1.3
VPS52-219ENST00000493379 DDX50Q9BQ39 737 aaKnown RBP6.95□□□□□ -1.3
VPS52-219ENST00000493379 CNPY3Q9BT09 278 aa6.95□□□□□ -1.3
VPS52-219ENST00000493379 MUC3BQ9H195 1237 aa6.95□□□□□ -1.3
VPS52-219ENST00000493379 ARRDC1-AS1Q9H2J1 176 aa6.95□□□□□ -1.3
VPS52-219ENST00000493379 WDCPQ9H6R7 721 aa6.95□□□□□ -1.3
VPS52-219ENST00000493379 SYNCQ9H7C4 482 aa6.95□□□□□ -1.3
VPS52-219ENST00000493379 NHEJ1Q9H9Q4 299 aaPredicted RBP6.95□□□□□ -1.3
VPS52-219ENST00000493379 MRPL47Q9HD33 250 aaKnown RBP6.95□□□□□ -1.3
VPS52-219ENST00000493379 ANLNQ9NQW6 1124 aa6.95□□□□□ -1.3
VPS52-219ENST00000493379 PRMT8Q9NR22 394 aaPredicted RBP6.95□□□□□ -1.3
VPS52-219ENST00000493379 ZNF212Q9UDV6 495 aa6.95□□□□□ -1.3
VPS52-219ENST00000493379 SLC12A6Q9UHW9 1150 aa6.95□□□□□ -1.3
VPS52-219ENST00000493379 KLF15Q9UIH9 416 aa6.95□□□□□ -1.3
VPS52-219ENST00000493379 PAXBP1Q9Y5B6 917 aa6.95□□□□□ -1.3
VPS52-219ENST00000493379 COL6A6A6NMZ7 2263 aa6.95□□□□□ -1.3
VPS52-219ENST00000493379 SPAG17Q6Q759 2223 aa6.95□□□□□ -1.3
VPS52-219ENST00000493379 ENO4A6NNW6 628 aa6.94□□□□□ -1.3
VPS52-219ENST00000493379 PALM2-AKAP2B1ALY0 433 aaPredicted RBP6.94□□□□□ -1.3
VPS52-219ENST00000493379 EIF3CLB5ME19 914 aaKnown RBP6.94□□□□□ -1.3
VPS52-219ENST00000493379 LCE2BO14633 110 aa6.94□□□□□ -1.3
VPS52-219ENST00000493379 NPC1O15118 1278 aa6.94□□□□□ -1.3
VPS52-219ENST00000493379 TULP3O75386 442 aa6.94□□□□□ -1.3
VPS52-219ENST00000493379 SMNDC1O75940 238 aaKnown RBP eCLIP6.94□□□□□ -1.3
VPS52-219ENST00000493379 MTA2O94776 668 aa6.94□□□□□ -1.3
VPS52-219ENST00000493379 ADCY5O95622 1261 aa6.94□□□□□ -1.3
VPS52-219ENST00000493379 TMEM253P0C7T8 217 aa6.94□□□□□ -1.3
VPS52-219ENST00000493379 TYRP14679 529 aa6.94□□□□□ -1.3
VPS52-219ENST00000493379 MX2P20592 715 aa6.94□□□□□ -1.3
VPS52-219ENST00000493379 ABCB4P21439 1286 aa6.94□□□□□ -1.3
VPS52-219ENST00000493379 GPD1P21695 349 aa6.94□□□□□ -1.3
VPS52-219ENST00000493379 HOXD9P28356 352 aaPredicted RBP6.94□□□□□ -1.3
VPS52-219ENST00000493379 HOXC13P31276 330 aa6.94□□□□□ -1.3
VPS52-219ENST00000493379 SDC4P31431 198 aa6.94□□□□□ -1.3
VPS52-219ENST00000493379 RDXP35241 583 aaKnown RBP6.94□□□□□ -1.3
VPS52-219ENST00000493379 PCK1P35558 622 aa6.94□□□□□ -1.3
VPS52-219ENST00000493379 SLC6A11P48066 632 aa6.94□□□□□ -1.3
VPS52-219ENST00000493379 SOX9P48436 509 aa6.94□□□□□ -1.3
VPS52-219ENST00000493379 GALCP54803 685 aa6.94□□□□□ -1.3
VPS52-219ENST00000493379 HADHBP55084 474 aaKnown RBP6.94□□□□□ -1.3
VPS52-219ENST00000493379 MRPS21P82921 87 aaKnown RBP6.94□□□□□ -1.3
VPS52-219ENST00000493379 OGDHQ02218 1023 aa6.94□□□□□ -1.3
VPS52-219ENST00000493379 DEUP1Q05D60 604 aa6.94□□□□□ -1.3
VPS52-219ENST00000493379 MESP2Q0VG99 397 aa6.94□□□□□ -1.3
VPS52-219ENST00000493379 GRSF1Q12849 480 aaKnown RBP eCLIP6.94□□□□□ -1.3
VPS52-219ENST00000493379 SEMA3BQ13214 749 aa6.94□□□□□ -1.3
VPS52-219ENST00000493379 SLC12A1Q13621 1099 aa6.94□□□□□ -1.3
VPS52-219ENST00000493379 PON2Q15165 354 aa6.94□□□□□ -1.3
VPS52-219ENST00000493379 FBXL22Q6P050 247 aa6.94□□□□□ -1.3
VPS52-219ENST00000493379 CYP4V2Q6ZWL3 525 aaPredicted RBP6.94□□□□□ -1.3
VPS52-219ENST00000493379 TMC6Q7Z403 805 aa6.94□□□□□ -1.3
VPS52-219ENST00000493379 TMEM139Q8IV31 216 aa6.94□□□□□ -1.3
VPS52-219ENST00000493379 PSTKQ8IV42 348 aaKnown RBP6.94□□□□□ -1.3
VPS52-219ENST00000493379 SPEM1Q8N4L4 309 aa6.94□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 49.7 ms