RNA–Protein interactions for RNA: ENST00000493341.1

VPS13A-212, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,001 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-212ENST00000493341 ADGRE3Q9BY15 652 aa4.9□□□□□ -1.62
VPS13A-212ENST00000493341 DEF6Q9H4E7 631 aa4.9□□□□□ -1.62
VPS13A-212ENST00000493341 DBNDD1Q9H9R9 158 aa4.9□□□□□ -1.62
VPS13A-212ENST00000493341 CD320Q9NPF0 282 aa4.9□□□□□ -1.62
VPS13A-212ENST00000493341 KLC4Q9NSK0 619 aa4.9□□□□□ -1.62
VPS13A-212ENST00000493341 EHD3Q9NZN3 535 aa4.9□□□□□ -1.62
VPS13A-212ENST00000493341 KIAA1456Q9P272 454 aa4.9□□□□□ -1.62
VPS13A-212ENST00000493341 FRMD4AQ9P2Q2 1039 aaPredicted RBP4.9□□□□□ -1.62
VPS13A-212ENST00000493341 MTRRQ9UBK8 725 aa4.9□□□□□ -1.62
VPS13A-212ENST00000493341 CTNNAL1Q9UBT7 734 aa4.9□□□□□ -1.62
VPS13A-212ENST00000493341 A4GNTQ9UNA3 340 aa4.9□□□□□ -1.62
VPS13A-212ENST00000493341 PPIEQ9UNP9 301 aaKnown RBP4.9□□□□□ -1.62
VPS13A-212ENST00000493341 SH2B3Q9UQQ2 575 aa4.9□□□□□ -1.62
VPS13A-212ENST00000493341 GLOD5A6NK44 160 aa4.9□□□□□ -1.63
VPS13A-212ENST00000493341 FAM20BO75063 409 aa4.9□□□□□ -1.63
VPS13A-212ENST00000493341 USP12O75317 370 aa4.9□□□□□ -1.63
VPS13A-212ENST00000493341 PSMD10O75832 226 aa4.9□□□□□ -1.63
VPS13A-212ENST00000493341 NXPH3O95157 252 aa4.9□□□□□ -1.63
VPS13A-212ENST00000493341 SLU7O95391 586 aaKnown RBP4.9□□□□□ -1.63
VPS13A-212ENST00000493341 ADAP00813 363 aa4.9□□□□□ -1.63
VPS13A-212ENST00000493341 NR2F6P10588 404 aa4.9□□□□□ -1.63
VPS13A-212ENST00000493341 ZFXP17010 805 aaPredicted RBP4.9□□□□□ -1.63
VPS13A-212ENST00000493341 ACO1P21399 889 aaKnown RBP4.9□□□□□ -1.63
VPS13A-212ENST00000493341 CPT2P23786 658 aa4.9□□□□□ -1.63
VPS13A-212ENST00000493341 FPR3P25089 353 aa4.9□□□□□ -1.63
VPS13A-212ENST00000493341 ITPKBP27987 946 aa4.9□□□□□ -1.63
VPS13A-212ENST00000493341 HOXC13P31276 330 aa4.9□□□□□ -1.63
VPS13A-212ENST00000493341 CYP2C18P33260 490 aa4.9□□□□□ -1.63
VPS13A-212ENST00000493341 ATP6V1E1P36543 226 aa4.9□□□□□ -1.63
VPS13A-212ENST00000493341 BMPR1AP36894 532 aa4.9□□□□□ -1.63
VPS13A-212ENST00000493341 VPS41P49754 854 aa4.9□□□□□ -1.63
VPS13A-212ENST00000493341 BFSP1Q12934 665 aa4.9□□□□□ -1.63
VPS13A-212ENST00000493341 BMPR2Q13873 1038 aa4.9□□□□□ -1.63
VPS13A-212ENST00000493341 PPP2R5BQ15173 497 aa4.9□□□□□ -1.63
VPS13A-212ENST00000493341 CNGA3Q16281 694 aa4.9□□□□□ -1.63
VPS13A-212ENST00000493341 SERTAD4-AS1Q5TG53 156 aa4.9□□□□□ -1.63
VPS13A-212ENST00000493341 TCERG1LQ5VWI1 586 aa4.9□□□□□ -1.63
VPS13A-212ENST00000493341 DCLRE1AQ6PJP8 1040 aa4.9□□□□□ -1.63
VPS13A-212ENST00000493341 ADGRA1Q86SQ6 560 aa4.9□□□□□ -1.63
VPS13A-212ENST00000493341 NEK9Q8TD19 979 aa4.9□□□□□ -1.63
VPS13A-212ENST00000493341 SNX21Q969T3 373 aa4.9□□□□□ -1.63
VPS13A-212ENST00000493341 EDC3Q96F86 508 aaKnown RBP4.9□□□□□ -1.63
VPS13A-212ENST00000493341 FBXL20Q96IG2 436 aa4.9□□□□□ -1.63
VPS13A-212ENST00000493341 CDHR1Q96JP9 859 aa4.9□□□□□ -1.63
VPS13A-212ENST00000493341 FNBP1Q96RU3 617 aa4.9□□□□□ -1.63
VPS13A-212ENST00000493341 H2AFJQ9BTM1 129 aa4.9□□□□□ -1.63
VPS13A-212ENST00000493341 ABHD14AQ9BUJ0 271 aa4.9□□□□□ -1.63
VPS13A-212ENST00000493341 ZFP64Q9NPA5 681 aa4.9□□□□□ -1.63
VPS13A-212ENST00000493341 TBCCD1Q9NVR7 557 aa4.9□□□□□ -1.63
VPS13A-212ENST00000493341 MTPAPQ9NVV4 582 aaKnown RBP eCLIP4.9□□□□□ -1.63
VPS13A-212ENST00000493341 TMEM248Q9NWD8 314 aa4.9□□□□□ -1.63
VPS13A-212ENST00000493341 CWC25Q9NXE8 425 aaPredicted RBP4.9□□□□□ -1.63
VPS13A-212ENST00000493341 NLKQ9UBE8 527 aa4.9□□□□□ -1.63
VPS13A-212ENST00000493341 CCL27Q9Y4X3 112 aa4.9□□□□□ -1.63
VPS13A-212ENST00000493341 HEMK1Q9Y5R4 338 aaPredicted RBP4.9□□□□□ -1.63
VPS13A-212ENST00000493341 ZFP37Q9Y6Q3 630 aaPredicted RBP4.9□□□□□ -1.63
VPS13A-212ENST00000493341 DUSP10Q9Y6W6 482 aa4.9□□□□□ -1.63
VPS13A-212ENST00000493341 ARHGAP10A1A4S6 786 aa4.89□□□□□ -1.63
VPS13A-212ENST00000493341 OR2A25A4D2G3 310 aa4.89□□□□□ -1.63
VPS13A-212ENST00000493341 OR6C68A6NDL8 312 aa4.89□□□□□ -1.63
VPS13A-212ENST00000493341 NPIPB6E9PJ23 425 aa4.89□□□□□ -1.63
VPS13A-212ENST00000493341 PRYO14603 147 aa4.89□□□□□ -1.63
VPS13A-212ENST00000493341 YY2O15391 372 aa4.89□□□□□ -1.63
VPS13A-212ENST00000493341 DIAPH2O60879 1101 aa4.89□□□□□ -1.63
VPS13A-212ENST00000493341 FCGR2AP12318 317 aa4.89□□□□□ -1.63
VPS13A-212ENST00000493341 IFNAR1P17181 557 aa4.89□□□□□ -1.63
VPS13A-212ENST00000493341 EDN2P20800 178 aa4.89□□□□□ -1.63
VPS13A-212ENST00000493341 PMS2P54278 862 aa4.89□□□□□ -1.63
VPS13A-212ENST00000493341 GALCP54803 685 aa4.89□□□□□ -1.63
VPS13A-212ENST00000493341 F2RL1P55085 397 aa4.89□□□□□ -1.63
VPS13A-212ENST00000493341 IKQ13123 557 aaPredicted RBP4.89□□□□□ -1.63
VPS13A-212ENST00000493341 ERCC6LQ2NKX8 1250 aa4.89□□□□□ -1.63
VPS13A-212ENST00000493341 RABL3Q5HYI8 236 aa4.89□□□□□ -1.63
VPS13A-212ENST00000493341 KRBOX4Q5JUW0 171 aa4.89□□□□□ -1.63
VPS13A-212ENST00000493341 VWA1Q6PCB0 445 aa4.89□□□□□ -1.63
VPS13A-212ENST00000493341 PRSS45Q7RTY3 260 aa4.89□□□□□ -1.63
VPS13A-212ENST00000493341 NUP93Q8N1F7 819 aa4.89□□□□□ -1.63
VPS13A-212ENST00000493341 ABHD11Q8NFV4 315 aa4.89□□□□□ -1.63
VPS13A-212ENST00000493341 RP9Q8TA86 221 aaKnown RBP4.89□□□□□ -1.63
VPS13A-212ENST00000493341 FAM110DQ8TAY7 271 aaPredicted RBP4.89□□□□□ -1.63
VPS13A-212ENST00000493341 SH3RF3Q8TEJ3 882 aaPredicted RBP4.89□□□□□ -1.63
VPS13A-212ENST00000493341 MRPS27Q92552 414 aaKnown RBP4.89□□□□□ -1.63
VPS13A-212ENST00000493341 SECISBP2LQ93073 1101 aaKnown RBP4.89□□□□□ -1.63
VPS13A-212ENST00000493341 ELMOD3Q96FG2 381 aa4.89□□□□□ -1.63
VPS13A-212ENST00000493341 PGAM5Q96HS1 289 aa4.89□□□□□ -1.63
VPS13A-212ENST00000493341 PGBD1Q96JS3 809 aa4.89□□□□□ -1.63
VPS13A-212ENST00000493341 FAM84AQ96KN4 292 aa4.89□□□□□ -1.63
VPS13A-212ENST00000493341 ADAD1Q96M93 576 aaKnown RBP4.89□□□□□ -1.63
VPS13A-212ENST00000493341 ADAM2Q99965 735 aa4.89□□□□□ -1.63
VPS13A-212ENST00000493341 ENTPD7Q9NQZ7 604 aa4.89□□□□□ -1.63
VPS13A-212ENST00000493341 ASNSD1Q9NWL6 643 aa4.89□□□□□ -1.63
VPS13A-212ENST00000493341 DLGAP2Q9P1A6 1054 aa4.89□□□□□ -1.63
VPS13A-212ENST00000493341 TCRBV7S3A2A0A539 114 aa4.89□□□□□ -1.63
VPS13A-212ENST00000493341 MCIDASD6RGH6 385 aa4.89□□□□□ -1.63
VPS13A-212ENST00000493341 PRICKLE3O43900 615 aaPredicted RBP4.89□□□□□ -1.63
VPS13A-212ENST00000493341 NUAK1O60285 661 aa4.89□□□□□ -1.63
VPS13A-212ENST00000493341 MTA2O94776 668 aa4.89□□□□□ -1.63
VPS13A-212ENST00000493341 CIITAP33076 1130 aa4.89□□□□□ -1.63
VPS13A-212ENST00000493341 BUD31P41223 144 aaPredicted RBP4.89□□□□□ -1.63
VPS13A-212ENST00000493341 SKIV2L2P42285 1042 aaKnown RBP4.89□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 70.6 ms