RNA–Protein interactions for RNA: ENST00000491552.1

MSH5-SAPCD1-206, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

TSL 3

Gene MSH5-SAPCD1, Length 706 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-206ENST00000491552 CASKIN2Q8WXE0 1202 aa16.59■□□□□ 0.25
MSH5-SAPCD1-206ENST00000491552 ISG20Q96AZ6 181 aaKnown RBP16.59■□□□□ 0.25
MSH5-SAPCD1-206ENST00000491552 CALR3Q96L12 384 aaKnown RBP16.59■□□□□ 0.25
MSH5-SAPCD1-206ENST00000491552 ETNK2Q9NVF9 386 aa16.59■□□□□ 0.25
MSH5-SAPCD1-206ENST00000491552 NCKAP1Q9Y2A7 1128 aa16.59■□□□□ 0.25
MSH5-SAPCD1-206ENST00000491552 HYOU1Q9Y4L1 999 aa16.59■□□□□ 0.25
MSH5-SAPCD1-206ENST00000491552 PCDHGA5Q9Y5G8 931 aa16.59■□□□□ 0.25
MSH5-SAPCD1-206ENST00000491552 A0A1W2PP55 124 aa16.58■□□□□ 0.24
MSH5-SAPCD1-206ENST00000491552 PRAMEF11O60813 436 aa16.58■□□□□ 0.24
MSH5-SAPCD1-206ENST00000491552 ZNF821O75541 412 aaPredicted RBP16.58■□□□□ 0.24
MSH5-SAPCD1-206ENST00000491552 TMCC1O94876 653 aa16.58■□□□□ 0.24
MSH5-SAPCD1-206ENST00000491552 IL4RP24394 825 aa16.58■□□□□ 0.24
MSH5-SAPCD1-206ENST00000491552 CHRNA3P32297 505 aa16.58■□□□□ 0.24
MSH5-SAPCD1-206ENST00000491552 SERPINB6P35237 376 aa16.58■□□□□ 0.24
MSH5-SAPCD1-206ENST00000491552 DNA2P51530 1060 aa16.58■□□□□ 0.24
MSH5-SAPCD1-206ENST00000491552 CARD16Q5EG05 197 aa16.58■□□□□ 0.24
MSH5-SAPCD1-206ENST00000491552 C11orf63Q6NUN7 778 aa16.58■□□□□ 0.24
MSH5-SAPCD1-206ENST00000491552 DPY19L3Q6ZPD9 716 aa16.58■□□□□ 0.24
MSH5-SAPCD1-206ENST00000491552 ARMCX6Q7L4S7 300 aa16.58■□□□□ 0.24
MSH5-SAPCD1-206ENST00000491552 CYP2U1Q7Z449 544 aa16.58■□□□□ 0.24
MSH5-SAPCD1-206ENST00000491552 RHOT1Q8IXI2 618 aa16.58■□□□□ 0.24
MSH5-SAPCD1-206ENST00000491552 TXLNBQ8N3L3 684 aa16.58■□□□□ 0.24
MSH5-SAPCD1-206ENST00000491552 DCLK2Q8N568 766 aa16.58■□□□□ 0.24
MSH5-SAPCD1-206ENST00000491552 DEFB119Q8N690 84 aa16.58■□□□□ 0.24
MSH5-SAPCD1-206ENST00000491552 CHST14Q8NCH0 376 aa16.58■□□□□ 0.24
MSH5-SAPCD1-206ENST00000491552 CCDC112Q8NEF3 446 aa16.58■□□□□ 0.24
MSH5-SAPCD1-206ENST00000491552 PIP4K2CQ8TBX8 421 aa16.58■□□□□ 0.24
MSH5-SAPCD1-206ENST00000491552 OMDQ99983 421 aa16.58■□□□□ 0.24
MSH5-SAPCD1-206ENST00000491552 DESI2Q9BSY9 194 aa16.58■□□□□ 0.24
MSH5-SAPCD1-206ENST00000491552 GPR174Q9BXC1 333 aa16.58■□□□□ 0.24
MSH5-SAPCD1-206ENST00000491552 TM6SF2Q9BZW4 377 aa16.58■□□□□ 0.24
MSH5-SAPCD1-206ENST00000491552 BTBD1Q9H0C5 482 aa16.58■□□□□ 0.24
MSH5-SAPCD1-206ENST00000491552 ARRDC1-AS1Q9H2J1 176 aa16.58■□□□□ 0.24
MSH5-SAPCD1-206ENST00000491552 SP110Q9HB58 689 aa16.58■□□□□ 0.24
MSH5-SAPCD1-206ENST00000491552 PDFQ9HBH1 243 aa16.58■□□□□ 0.24
MSH5-SAPCD1-206ENST00000491552 FBXL12Q9NXK8 326 aa16.58■□□□□ 0.24
MSH5-SAPCD1-206ENST00000491552 UBA2Q9UBT2 640 aaPredicted RBP16.58■□□□□ 0.24
MSH5-SAPCD1-206ENST00000491552 SERGEFQ9UGK8 458 aa16.58■□□□□ 0.24
MSH5-SAPCD1-206ENST00000491552 IL36AQ9UHA7 158 aa16.58■□□□□ 0.24
MSH5-SAPCD1-206ENST00000491552 PPM1HQ9ULR3 514 aa16.58■□□□□ 0.24
MSH5-SAPCD1-206ENST00000491552 ALG6Q9Y672 507 aa16.58■□□□□ 0.24
MSH5-SAPCD1-206ENST00000491552 BCLAF3A2AJT9 711 aaKnown RBP16.57■□□□□ 0.24
MSH5-SAPCD1-206ENST00000491552 LRRD1A4D1F6 860 aa16.57■□□□□ 0.24
MSH5-SAPCD1-206ENST00000491552 J3KR12 359 aa16.57■□□□□ 0.24
MSH5-SAPCD1-206ENST00000491552 PJA2O43164 708 aa16.57■□□□□ 0.24
MSH5-SAPCD1-206ENST00000491552 LRP3O75074 770 aa16.57■□□□□ 0.24
MSH5-SAPCD1-206ENST00000491552 RNASEH2AO75792 299 aaKnown RBP16.57■□□□□ 0.24
MSH5-SAPCD1-206ENST00000491552 GSRP00390 522 aa16.57■□□□□ 0.24
MSH5-SAPCD1-206ENST00000491552 PRNPP04156 253 aa16.57■□□□□ 0.24
MSH5-SAPCD1-206ENST00000491552 KRT1P04264 644 aa16.57■□□□□ 0.24
MSH5-SAPCD1-206ENST00000491552 CTSLP07711 333 aa16.57■□□□□ 0.24
MSH5-SAPCD1-206ENST00000491552 TNNT1P13805 278 aa16.57■□□□□ 0.24
MSH5-SAPCD1-206ENST00000491552 KDELR1P24390 212 aa16.57■□□□□ 0.24
MSH5-SAPCD1-206ENST00000491552 PTGER3P43115 390 aa16.57■□□□□ 0.24
MSH5-SAPCD1-206ENST00000491552 CCNHP51946 323 aaPredicted RBP16.57■□□□□ 0.24
MSH5-SAPCD1-206ENST00000491552 CREB5Q02930 508 aa16.57■□□□□ 0.24
MSH5-SAPCD1-206ENST00000491552 INO80DQ53TQ3 878 aaPredicted RBP16.57■□□□□ 0.24
MSH5-SAPCD1-206ENST00000491552 ANKRD20A8PQ5CZ79 823 aa16.57■□□□□ 0.24
MSH5-SAPCD1-206ENST00000491552 LYSMD4Q5XG99 296 aa16.57■□□□□ 0.24
MSH5-SAPCD1-206ENST00000491552 TP53INP2Q8IXH6 220 aa16.57■□□□□ 0.24
MSH5-SAPCD1-206ENST00000491552 PLPP6Q8IY26 295 aa16.57■□□□□ 0.24
MSH5-SAPCD1-206ENST00000491552 HDDC3Q8N4P3 179 aa16.57■□□□□ 0.24
MSH5-SAPCD1-206ENST00000491552 AADATQ8N5Z0 425 aa16.57■□□□□ 0.24
MSH5-SAPCD1-206ENST00000491552 TMIEQ8NEW7 156 aa16.57■□□□□ 0.24
MSH5-SAPCD1-206ENST00000491552 OR2AP1Q8NGE2 309 aa16.57■□□□□ 0.24
MSH5-SAPCD1-206ENST00000491552 TPCN2Q8NHX9 752 aa16.57■□□□□ 0.24
MSH5-SAPCD1-206ENST00000491552 PCDH19Q8TAB3 1148 aa16.57■□□□□ 0.24
MSH5-SAPCD1-206ENST00000491552 RAPGEF5Q92565 580 aa16.57■□□□□ 0.24
MSH5-SAPCD1-206ENST00000491552 FOXJ1Q92949 421 aa16.57■□□□□ 0.24
MSH5-SAPCD1-206ENST00000491552 FAF2Q96CS3 445 aa16.57■□□□□ 0.24
MSH5-SAPCD1-206ENST00000491552 LACRTQ9GZZ8 138 aa16.57■□□□□ 0.24
MSH5-SAPCD1-206ENST00000491552 GOLPH3Q9H4A6 298 aa16.57■□□□□ 0.24
MSH5-SAPCD1-206ENST00000491552 SGK2Q9HBY8 427 aa16.57■□□□□ 0.24
MSH5-SAPCD1-206ENST00000491552 DDX56Q9NY93 547 aaKnown RBP16.57■□□□□ 0.24
MSH5-SAPCD1-206ENST00000491552 SALL4Q9UJQ4 1053 aa16.57■□□□□ 0.24
MSH5-SAPCD1-206ENST00000491552 SARDHQ9UL12 918 aa16.57■□□□□ 0.24
MSH5-SAPCD1-206ENST00000491552 FZD4Q9ULV1 537 aa16.57■□□□□ 0.24
MSH5-SAPCD1-206ENST00000491552 DMDP11532 3685 aa16.57■□□□□ 0.24
MSH5-SAPCD1-206ENST00000491552 THADAQ6YHU6 1953 aa16.57■□□□□ 0.24
MSH5-SAPCD1-206ENST00000491552 ZNF487B1APH4 448 aa16.56■□□□□ 0.24
MSH5-SAPCD1-206ENST00000491552 PSTPIP1O43586 416 aa16.56■□□□□ 0.24
MSH5-SAPCD1-206ENST00000491552 SEMA4FO95754 770 aa16.56■□□□□ 0.24
MSH5-SAPCD1-206ENST00000491552 ACSL1P33121 698 aa16.56■□□□□ 0.24
MSH5-SAPCD1-206ENST00000491552 DRD3P35462 400 aa16.56■□□□□ 0.24
MSH5-SAPCD1-206ENST00000491552 MPLP40238 635 aa16.56■□□□□ 0.24
MSH5-SAPCD1-206ENST00000491552 METAP1P53582 386 aa16.56■□□□□ 0.24
MSH5-SAPCD1-206ENST00000491552 NAP1L1P55209 391 aaKnown RBP16.56■□□□□ 0.24
MSH5-SAPCD1-206ENST00000491552 RHOAP61586 193 aa16.56■□□□□ 0.24
MSH5-SAPCD1-206ENST00000491552 SNRPD1P62314 119 aaKnown RBP16.56■□□□□ 0.24
MSH5-SAPCD1-206ENST00000491552 ZNF33AQ06730 810 aa16.56■□□□□ 0.24
MSH5-SAPCD1-206ENST00000491552 IL10RBQ08334 325 aa16.56■□□□□ 0.24
MSH5-SAPCD1-206ENST00000491552 SPEM2Q0P670 501 aa16.56■□□□□ 0.24
MSH5-SAPCD1-206ENST00000491552 POM121L1PQ3SYA9 428 aa16.56■□□□□ 0.24
MSH5-SAPCD1-206ENST00000491552 ODF2Q5BJF6 829 aa16.56■□□□□ 0.24
MSH5-SAPCD1-206ENST00000491552 NCBP2-AS2Q69YL0 99 aa16.56■□□□□ 0.24
MSH5-SAPCD1-206ENST00000491552 ARHGAP36Q6ZRI8 547 aa16.56■□□□□ 0.24
MSH5-SAPCD1-206ENST00000491552 DAAM2Q86T65 1068 aa16.56■□□□□ 0.24
MSH5-SAPCD1-206ENST00000491552 VSIG1Q86XK7 387 aa16.56■□□□□ 0.24
MSH5-SAPCD1-206ENST00000491552 SLC41A1Q8IVJ1 513 aa16.56■□□□□ 0.24
MSH5-SAPCD1-206ENST00000491552 CADM4Q8NFZ8 388 aa16.56■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms