RNA–Protein interactions for RNA: ENST00000489862.1

DEPDC1-204, Transcript of DEP domain containing 1, humanhuman

TSL 1 (best)

Gene DEPDC1, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC1-204ENST00000489862 WDR53Q7Z5U6 358 aaPredicted RBP3.4□□□□□ -1.87
DEPDC1-204ENST00000489862 YTHDF3Q7Z739 585 aaKnown RBP3.4□□□□□ -1.87
DEPDC1-204ENST00000489862 ZNF280BQ86YH2 543 aa3.4□□□□□ -1.87
DEPDC1-204ENST00000489862 TEX9Q8N6V9 391 aa3.4□□□□□ -1.87
DEPDC1-204ENST00000489862 CCDC150Q8NCX0 1101 aa3.4□□□□□ -1.87
DEPDC1-204ENST00000489862 GLG1Q92896 1179 aa3.4□□□□□ -1.87
DEPDC1-204ENST00000489862 PTP4A1Q93096 173 aa3.4□□□□□ -1.87
DEPDC1-204ENST00000489862 SPSB4Q96A44 273 aa3.4□□□□□ -1.87
DEPDC1-204ENST00000489862 R3HDM4Q96D70 268 aa3.4□□□□□ -1.87
DEPDC1-204ENST00000489862 KTI12Q96EK9 354 aaPredicted RBP3.4□□□□□ -1.87
DEPDC1-204ENST00000489862 WDFY2Q96P53 400 aa3.4□□□□□ -1.87
DEPDC1-204ENST00000489862 PIGSQ96S52 555 aa3.4□□□□□ -1.87
DEPDC1-204ENST00000489862 PPP1R9BQ96SB3 815 aa3.4□□□□□ -1.87
DEPDC1-204ENST00000489862 FUZQ9BT04 418 aa3.4□□□□□ -1.87
DEPDC1-204ENST00000489862 EIF2AQ9BY44 585 aaKnown RBP3.4□□□□□ -1.87
DEPDC1-204ENST00000489862 EDEM3Q9BZQ6 932 aa3.4□□□□□ -1.87
DEPDC1-204ENST00000489862 BRD8Q9H0E9 1235 aa3.4□□□□□ -1.87
DEPDC1-204ENST00000489862 MUC13Q9H3R2 512 aa3.4□□□□□ -1.87
DEPDC1-204ENST00000489862 SEMA4BQ9NPR2 832 aaPredicted RBP3.4□□□□□ -1.87
DEPDC1-204ENST00000489862 XPR1Q9UBH6 696 aa3.4□□□□□ -1.87
DEPDC1-204ENST00000489862 DKK4Q9UBT3 224 aa3.4□□□□□ -1.87
DEPDC1-204ENST00000489862 GTF3C4Q9UKN8 822 aa3.4□□□□□ -1.87
DEPDC1-204ENST00000489862 BLOC1S6Q9UL45 172 aa3.4□□□□□ -1.87
DEPDC1-204ENST00000489862 NDRG4Q9ULP0 352 aaKnown RBP3.4□□□□□ -1.87
DEPDC1-204ENST00000489862 CNTN6Q9UQ52 1028 aa3.4□□□□□ -1.87
DEPDC1-204ENST00000489862 LRP12Q9Y561 859 aa3.4□□□□□ -1.87
DEPDC1-204ENST00000489862 PASKQ96RG2 1323 aa3.39□□□□□ -1.87
DEPDC1-204ENST00000489862 A1L4Q6 167 aa3.39□□□□□ -1.87
DEPDC1-204ENST00000489862 MBD3L4A6NDZ8 208 aaPredicted RBP3.39□□□□□ -1.87
DEPDC1-204ENST00000489862 MBD3L3A6NE82 208 aaPredicted RBP3.39□□□□□ -1.87
DEPDC1-204ENST00000489862 TNPO2O14787 897 aaKnown RBP3.39□□□□□ -1.87
DEPDC1-204ENST00000489862 B3GALNT1O75752 331 aa3.39□□□□□ -1.87
DEPDC1-204ENST00000489862 PPIFP30405 207 aaKnown RBP3.39□□□□□ -1.87
DEPDC1-204ENST00000489862 PBX3P40426 434 aa3.39□□□□□ -1.87
DEPDC1-204ENST00000489862 RAD23AP54725 363 aa3.39□□□□□ -1.87
DEPDC1-204ENST00000489862 ALDH18A1P54886 795 aaKnown RBP3.39□□□□□ -1.87
DEPDC1-204ENST00000489862 FOXG1P55316 489 aaPredicted RBP3.39□□□□□ -1.87
DEPDC1-204ENST00000489862 POLR2FP61218 127 aaKnown RBP3.39□□□□□ -1.87
DEPDC1-204ENST00000489862 TUBA4AP68366 448 aa3.39□□□□□ -1.87
DEPDC1-204ENST00000489862 UBXN1Q04323 297 aa3.39□□□□□ -1.87
DEPDC1-204ENST00000489862 AIMP1Q12904 312 aaKnown RBP3.39□□□□□ -1.87
DEPDC1-204ENST00000489862 PTP4A2Q12974 167 aa3.39□□□□□ -1.87
DEPDC1-204ENST00000489862 RAB32Q13637 225 aa3.39□□□□□ -1.87
DEPDC1-204ENST00000489862 KLF9Q13886 244 aaPredicted RBP3.39□□□□□ -1.87
DEPDC1-204ENST00000489862 E2F2Q14209 437 aa3.39□□□□□ -1.87
DEPDC1-204ENST00000489862 SMC1AQ14683 1233 aaKnown RBP3.39□□□□□ -1.87
DEPDC1-204ENST00000489862 NFIL3Q16649 462 aa3.39□□□□□ -1.87
DEPDC1-204ENST00000489862 PARP10Q53GL7 1025 aa3.39□□□□□ -1.87
DEPDC1-204ENST00000489862 ZNF805Q5CZA5 627 aa3.39□□□□□ -1.87
DEPDC1-204ENST00000489862 ARL6IP4Q66PJ3 421 aaKnown RBP3.39□□□□□ -1.87
DEPDC1-204ENST00000489862 RINT1Q6NUQ1 792 aa3.39□□□□□ -1.87
DEPDC1-204ENST00000489862 CAVIN1Q6NZI2 390 aaKnown RBP3.39□□□□□ -1.87
DEPDC1-204ENST00000489862 DLK2Q6UY11 383 aa3.39□□□□□ -1.87
DEPDC1-204ENST00000489862 KRTAP5-2Q701N4 177 aa3.39□□□□□ -1.87
DEPDC1-204ENST00000489862 GALNT7Q86SF2 657 aa3.39□□□□□ -1.87
DEPDC1-204ENST00000489862 FRMD1Q8N878 549 aa3.39□□□□□ -1.87
DEPDC1-204ENST00000489862 LSM14AQ8ND56 463 aaKnown RBP3.39□□□□□ -1.87
DEPDC1-204ENST00000489862 XAGE5Q8WWM1 108 aa3.39□□□□□ -1.87
DEPDC1-204ENST00000489862 KRT35Q92764 455 aa3.39□□□□□ -1.87
DEPDC1-204ENST00000489862 SDCCAG3Q96C92 435 aa3.39□□□□□ -1.87
DEPDC1-204ENST00000489862 RBM18Q96H35 190 aaKnown RBP3.39□□□□□ -1.87
DEPDC1-204ENST00000489862 SPATA17Q96L03 361 aa3.39□□□□□ -1.87
DEPDC1-204ENST00000489862 PIP5K1AQ99755 562 aa3.39□□□□□ -1.87
DEPDC1-204ENST00000489862 HTATIP2Q9BUP3 242 aa3.39□□□□□ -1.87
DEPDC1-204ENST00000489862 KLHL4Q9C0H6 718 aa3.39□□□□□ -1.87
DEPDC1-204ENST00000489862 MS4A7Q9GZW8 240 aaPredicted RBP3.39□□□□□ -1.87
DEPDC1-204ENST00000489862 GLOD4Q9HC38 313 aa3.39□□□□□ -1.87
DEPDC1-204ENST00000489862 ERVK-5Q9HDB9 667 aa3.39□□□□□ -1.87
DEPDC1-204ENST00000489862 SNX15Q9NRS6 342 aa3.39□□□□□ -1.87
DEPDC1-204ENST00000489862 CHORDC1Q9UHD1 332 aaPredicted RBP3.39□□□□□ -1.87
DEPDC1-204ENST00000489862 TMEM5Q9Y2B1 443 aa3.39□□□□□ -1.87
DEPDC1-204ENST00000489862 GLI2P10070 1586 aa3.39□□□□□ -1.87
DEPDC1-204ENST00000489862 WDR7Q9Y4E6 1490 aa3.38□□□□□ -1.87
DEPDC1-204ENST00000489862 CASKIN1Q8WXD9 1431 aa3.38□□□□□ -1.87
DEPDC1-204ENST00000489862 M0QYT0 321 aa3.38□□□□□ -1.87
DEPDC1-204ENST00000489862 HMMRO75330 724 aa3.38□□□□□ -1.87
DEPDC1-204ENST00000489862 SLC22A3O75751 556 aa3.38□□□□□ -1.87
DEPDC1-204ENST00000489862 PSMD10O75832 226 aa3.38□□□□□ -1.87
DEPDC1-204ENST00000489862 HEXIM1O94992 359 aaKnown RBP3.38□□□□□ -1.87
DEPDC1-204ENST00000489862 PDE8BO95263 885 aa3.38□□□□□ -1.87
DEPDC1-204ENST00000489862 CER1O95813 267 aa3.38□□□□□ -1.87
DEPDC1-204ENST00000489862 SRGAP2BP0DMP2 458 aa3.38□□□□□ -1.87
DEPDC1-204ENST00000489862 SCG2P13521 617 aa3.38□□□□□ -1.87
DEPDC1-204ENST00000489862 ACVR2AP27037 513 aa3.38□□□□□ -1.87
DEPDC1-204ENST00000489862 TNFRSF8P28908 595 aa3.38□□□□□ -1.87
DEPDC1-204ENST00000489862 SERPINA4P29622 427 aa3.38□□□□□ -1.87
DEPDC1-204ENST00000489862 NTSR1P30989 418 aa3.38□□□□□ -1.87
DEPDC1-204ENST00000489862 ARL3P36405 182 aa3.38□□□□□ -1.87
DEPDC1-204ENST00000489862 PTDSS1P48651 473 aaKnown RBP3.38□□□□□ -1.87
DEPDC1-204ENST00000489862 MCM2P49736 904 aa3.38□□□□□ -1.87
DEPDC1-204ENST00000489862 RBM5P52756 815 aaKnown RBP eCLIP3.38□□□□□ -1.87
DEPDC1-204ENST00000489862 FAM3BP58499 235 aaPredicted RBP3.38□□□□□ -1.87
DEPDC1-204ENST00000489862 RBP5P82980 135 aa3.38□□□□□ -1.87
DEPDC1-204ENST00000489862 NSUN2Q08J23 767 aaKnown RBP eCLIP3.38□□□□□ -1.87
DEPDC1-204ENST00000489862 MYO1EQ12965 1108 aa3.38□□□□□ -1.87
DEPDC1-204ENST00000489862 SEMA3AQ14563 771 aa3.38□□□□□ -1.87
DEPDC1-204ENST00000489862 RPS6KA2Q15349 733 aa3.38□□□□□ -1.87
DEPDC1-204ENST00000489862 SEC23BQ15437 767 aa3.38□□□□□ -1.87
DEPDC1-204ENST00000489862 ETFDHQ16134 617 aa3.38□□□□□ -1.87
DEPDC1-204ENST00000489862 ZIK1Q3SY52 487 aaPredicted RBP3.38□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 87.4 ms