RNA–Protein interactions for RNA: ENST00000489573.5

SMC4-221, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 1 (best)

Gene SMC4, Length 1,553 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-221ENST00000489573 TTC25Q96NG3 672 aa22.04■■□□□ 1.12
SMC4-221ENST00000489573 S1PR5Q9H228 398 aa22.04■■□□□ 1.12
SMC4-221ENST00000489573 CLDND1Q9NY35 253 aa22.04■■□□□ 1.12
SMC4-221ENST00000489573 VPS28Q9UK41 221 aa22.04■■□□□ 1.12
SMC4-221ENST00000489573 CDH7Q9ULB5 785 aa22.04■■□□□ 1.12
SMC4-221ENST00000489573 AAR2Q9Y312 384 aaKnown RBP22.04■■□□□ 1.12
SMC4-221ENST00000489573 SUN1O94901 812 aa22.03■■□□□ 1.12
SMC4-221ENST00000489573 VIPR2P41587 438 aa22.03■■□□□ 1.12
SMC4-221ENST00000489573 MAGEA3P43357 314 aa22.03■■□□□ 1.12
SMC4-221ENST00000489573 GEMP55040 296 aa22.03■■□□□ 1.12
SMC4-221ENST00000489573 FAM193AP78312 1265 aa22.03■■□□□ 1.12
SMC4-221ENST00000489573 MTM1Q13496 603 aa22.03■■□□□ 1.12
SMC4-221ENST00000489573 CTC1Q2NKJ3 1217 aa22.03■■□□□ 1.12
SMC4-221ENST00000489573 UBAP2Q5T6F2 1119 aaKnown RBP22.03■■□□□ 1.12
SMC4-221ENST00000489573 LRRC8BQ6P9F7 803 aa22.03■■□□□ 1.12
SMC4-221ENST00000489573 LRIG3Q6UXM1 1119 aa22.03■■□□□ 1.12
SMC4-221ENST00000489573 DCAF4L2Q8NA75 395 aa22.03■■□□□ 1.12
SMC4-221ENST00000489573 ALG14Q96F25 216 aa22.03■■□□□ 1.12
SMC4-221ENST00000489573 OXNAD1Q96HP4 312 aaPredicted RBP22.03■■□□□ 1.12
SMC4-221ENST00000489573 LRRC3BQ96PB8 259 aa22.03■■□□□ 1.12
SMC4-221ENST00000489573 BBS2Q9BXC9 721 aa22.03■■□□□ 1.12
SMC4-221ENST00000489573 SLC25A51Q9H1U9 297 aa22.03■■□□□ 1.12
SMC4-221ENST00000489573 LRRC40Q9H9A6 602 aa22.03■■□□□ 1.12
SMC4-221ENST00000489573 HAUS2Q9NVX0 235 aa22.03■■□□□ 1.12
SMC4-221ENST00000489573 KIAA1522Q9P206 1035 aaPredicted RBP22.03■■□□□ 1.12
SMC4-221ENST00000489573 CLEC4EQ9ULY5 219 aa22.03■■□□□ 1.12
SMC4-221ENST00000489573 NEDD8-MDP1E9PL57 170 aa22.02■■□□□ 1.12
SMC4-221ENST00000489573 ACSL3O95573 720 aa22.02■■□□□ 1.12
SMC4-221ENST00000489573 NUDT17P0C025 328 aa22.02■■□□□ 1.12
SMC4-221ENST00000489573 POU3F3P20264 500 aaPredicted RBP22.02■■□□□ 1.12
SMC4-221ENST00000489573 GRIA1P42261 906 aa22.02■■□□□ 1.12
SMC4-221ENST00000489573 LMAN2Q12907 356 aa22.02■■□□□ 1.12
SMC4-221ENST00000489573 SPARCL1Q14515 664 aa22.02■■□□□ 1.12
SMC4-221ENST00000489573 SLC29A2Q14542 456 aa22.02■■□□□ 1.12
SMC4-221ENST00000489573 LY6G5CQ5SRR4 150 aa22.02■■□□□ 1.12
SMC4-221ENST00000489573 HP1BP3Q5SSJ5 553 aaPredicted RBP22.02■■□□□ 1.12
SMC4-221ENST00000489573 ANKMY2Q8IV38 441 aa22.02■■□□□ 1.12
SMC4-221ENST00000489573 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP22.02■■□□□ 1.12
SMC4-221ENST00000489573 BPIFB1Q8TDL5 484 aa22.02■■□□□ 1.12
SMC4-221ENST00000489573 OSCP1Q8WVF1 389 aa22.02■■□□□ 1.12
SMC4-221ENST00000489573 TRPV4Q9HBA0 871 aa22.02■■□□□ 1.12
SMC4-221ENST00000489573 OBP2AQ9NY56 170 aa22.02■■□□□ 1.12
SMC4-221ENST00000489573 MARK1Q9P0L2 795 aa22.02■■□□□ 1.12
SMC4-221ENST00000489573 SEPT3Q9UH03 358 aa22.02■■□□□ 1.12
SMC4-221ENST00000489573 SOX1O00570 391 aaPredicted RBP22.01■■□□□ 1.11
SMC4-221ENST00000489573 SNAP91O60641 907 aa22.01■■□□□ 1.11
SMC4-221ENST00000489573 AVILO75366 819 aa22.01■■□□□ 1.11
SMC4-221ENST00000489573 ZMPSTE24O75844 475 aa22.01■■□□□ 1.11
SMC4-221ENST00000489573 MAXP61244 160 aa22.01■■□□□ 1.11
SMC4-221ENST00000489573 ARF5P84085 180 aa22.01■■□□□ 1.11
SMC4-221ENST00000489573 DLX2Q07687 328 aaPredicted RBP22.01■■□□□ 1.11
SMC4-221ENST00000489573 ITKQ08881 620 aa22.01■■□□□ 1.11
SMC4-221ENST00000489573 CCDC38Q502W7 563 aa22.01■■□□□ 1.11
SMC4-221ENST00000489573 EP400NLQ6ZTU2 488 aa22.01■■□□□ 1.11
SMC4-221ENST00000489573 ADGRG2Q8IZP9 1017 aa22.01■■□□□ 1.11
SMC4-221ENST00000489573 PGBD5Q8N414 524 aa22.01■■□□□ 1.11
SMC4-221ENST00000489573 ZNF557Q8N988 423 aaPredicted RBP22.01■■□□□ 1.11
SMC4-221ENST00000489573 FBXO36Q8NEA4 188 aa22.01■■□□□ 1.11
SMC4-221ENST00000489573 SPATA22Q8NHS9 363 aa22.01■■□□□ 1.11
SMC4-221ENST00000489573 PYROXD1Q8WU10 500 aa22.01■■□□□ 1.11
SMC4-221ENST00000489573 RIPOR3Q96MK2 946 aa22.01■■□□□ 1.11
SMC4-221ENST00000489573 WDR83Q9BRX9 315 aaKnown RBP22.01■■□□□ 1.11
SMC4-221ENST00000489573 C2orf49Q9BVC5 232 aaPredicted RBP22.01■■□□□ 1.11
SMC4-221ENST00000489573 CINPQ9BW66 212 aaPredicted RBP22.01■■□□□ 1.11
SMC4-221ENST00000489573 POLR1EQ9GZS1 481 aaKnown RBP22.01■■□□□ 1.11
SMC4-221ENST00000489573 DUS2Q9NX74 493 aaKnown RBP22.01■■□□□ 1.11
SMC4-221ENST00000489573 UBP1Q9NZI7 540 aa22.01■■□□□ 1.11
SMC4-221ENST00000489573 MYO18AQ92614 2054 aaKnown RBP22.01■■□□□ 1.11
SMC4-221ENST00000489573 TRANK1O15050 2925 aa22■■□□□ 1.11
SMC4-221ENST00000489573 AGPSO00116 658 aa22■■□□□ 1.11
SMC4-221ENST00000489573 ELK3P41970 407 aa22■■□□□ 1.11
SMC4-221ENST00000489573 GPS2Q13227 327 aa22■■□□□ 1.11
SMC4-221ENST00000489573 SLC12A1Q13621 1099 aa22■■□□□ 1.11
SMC4-221ENST00000489573 ADGRE1Q14246 886 aa22■■□□□ 1.11
SMC4-221ENST00000489573 NAPEPLDQ6IQ20 393 aa22■■□□□ 1.11
SMC4-221ENST00000489573 LRRC39Q96DD0 335 aa22■■□□□ 1.11
SMC4-221ENST00000489573 IMP4Q96G21 291 aaKnown RBP22■■□□□ 1.11
SMC4-221ENST00000489573 VPS51Q9UID3 782 aa22■■□□□ 1.11
SMC4-221ENST00000489573 CHMP2BQ9UQN3 213 aa22■■□□□ 1.11
SMC4-221ENST00000489573 ACTL7AQ9Y615 435 aa22■■□□□ 1.11
SMC4-221ENST00000489573 NFS1Q9Y697 457 aa22■■□□□ 1.11
SMC4-221ENST00000489573 DYNC1LI1Q9Y6G9 523 aaKnown RBP22■■□□□ 1.11
SMC4-221ENST00000489573 TEX264Q9Y6I9 313 aa22■■□□□ 1.11
SMC4-221ENST00000489573 HEPACAM2A8MVW5 462 aa21.99■■□□□ 1.11
SMC4-221ENST00000489573 MT-CYBP00156 380 aaPredicted RBP21.99■■□□□ 1.11
SMC4-221ENST00000489573 ABHD2P08910 425 aa21.99■■□□□ 1.11
SMC4-221ENST00000489573 TYRP14679 529 aa21.99■■□□□ 1.11
SMC4-221ENST00000489573 FCARP24071 287 aa21.99■■□□□ 1.11
SMC4-221ENST00000489573 CD70P32970 193 aa21.99■■□□□ 1.11
SMC4-221ENST00000489573 EIF3BP55884 814 aaKnown RBP21.99■■□□□ 1.11
SMC4-221ENST00000489573 DSC2Q02487 901 aa21.99■■□□□ 1.11
SMC4-221ENST00000489573 NIPAL4Q0D2K0 466 aa21.99■■□□□ 1.11
SMC4-221ENST00000489573 MPP3Q13368 585 aa21.99■■□□□ 1.11
SMC4-221ENST00000489573 LINC00523Q86TU6 105 aa21.99■■□□□ 1.11
SMC4-221ENST00000489573 APCDD1Q8J025 514 aa21.99■■□□□ 1.11
SMC4-221ENST00000489573 AGGF1Q8N302 714 aaeCLIP21.99■■□□□ 1.112e-85■■■■■ 286.7
SMC4-221ENST00000489573 ATP11CQ8NB49 1132 aa21.99■■□□□ 1.11
SMC4-221ENST00000489573 OR2W6PQ8NHA6 318 aa21.99■■□□□ 1.11
SMC4-221ENST00000489573 UHMK1Q8TAS1 419 aaKnown RBP21.99■■□□□ 1.11
SMC4-221ENST00000489573 ZBTB9Q96C00 473 aa21.99■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms