RNA–Protein interactions for RNA: ENST00000488543.1

HDAC6-230, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 2,484 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-230ENST00000488543 TRIM56Q9BRZ2 755 aaKnown RBP12.39□□□□□ -0.43
HDAC6-230ENST00000488543 MLPHQ9BV36 600 aaPredicted RBP12.39□□□□□ -0.43
HDAC6-230ENST00000488543 NACA2Q9H009 215 aa12.39□□□□□ -0.43
HDAC6-230ENST00000488543 GBA3Q9H227 469 aa12.39□□□□□ -0.43
HDAC6-230ENST00000488543 GEMIN8Q9NWZ8 242 aaKnown RBP12.39□□□□□ -0.43
HDAC6-230ENST00000488543 PPARGC1AQ9UBK2 798 aaKnown RBP12.39□□□□□ -0.43
HDAC6-230ENST00000488543 ZC3H7BQ9UGR2 993 aaKnown RBP12.39□□□□□ -0.43
HDAC6-230ENST00000488543 TRHDEQ9UKU6 1024 aa12.39□□□□□ -0.43
HDAC6-230ENST00000488543 NUMBLQ9Y6R0 609 aa12.39□□□□□ -0.43
HDAC6-230ENST00000488543 DFFAO00273 331 aa12.39□□□□□ -0.43
HDAC6-230ENST00000488543 MAFKO60675 156 aa12.39□□□□□ -0.43
HDAC6-230ENST00000488543 CLASP2O75122 1294 aaKnown RBP12.39□□□□□ -0.43
HDAC6-230ENST00000488543 SPAG6O75602 509 aa12.39□□□□□ -0.43
HDAC6-230ENST00000488543 ANP32DO95626 131 aa12.39□□□□□ -0.43
HDAC6-230ENST00000488543 CCNCP24863 283 aa12.39□□□□□ -0.43
HDAC6-230ENST00000488543 ATP5C1P36542 298 aaKnown RBP12.39□□□□□ -0.43
HDAC6-230ENST00000488543 CYP4F8P98187 520 aa12.39□□□□□ -0.43
HDAC6-230ENST00000488543 KLHL38Q2WGJ6 581 aa12.39□□□□□ -0.43
HDAC6-230ENST00000488543 HECTD3Q5T447 861 aa12.39□□□□□ -0.43
HDAC6-230ENST00000488543 STXBP5Q5T5C0 1151 aa12.39□□□□□ -0.43
HDAC6-230ENST00000488543 PPP2R2DQ66LE6 453 aa12.39□□□□□ -0.43
HDAC6-230ENST00000488543 KCTD11Q693B1 232 aa12.39□□□□□ -0.43
HDAC6-230ENST00000488543 NADSYN1Q6IA69 706 aa12.39□□□□□ -0.43
HDAC6-230ENST00000488543 PRPF39Q86UA1 669 aaKnown RBP12.39□□□□□ -0.43
HDAC6-230ENST00000488543 CNTD1Q8N815 330 aa12.39□□□□□ -0.43
HDAC6-230ENST00000488543 DCAKDQ8WVC6 231 aa12.39□□□□□ -0.43
HDAC6-230ENST00000488543 IGSF8Q969P0 613 aa12.39□□□□□ -0.43
HDAC6-230ENST00000488543 WBP2Q969T9 261 aa12.39□□□□□ -0.43
HDAC6-230ENST00000488543 UTP4Q969X6 686 aaKnown RBP12.39□□□□□ -0.43
HDAC6-230ENST00000488543 MYEOVQ96EZ4 313 aa12.39□□□□□ -0.43
HDAC6-230ENST00000488543 TRMT2BQ96GJ1 504 aaKnown RBP12.39□□□□□ -0.43
HDAC6-230ENST00000488543 TEKT5Q96M29 485 aa12.39□□□□□ -0.43
HDAC6-230ENST00000488543 PAFAH2Q99487 392 aa12.39□□□□□ -0.43
HDAC6-230ENST00000488543 EBNA1BP2Q99848 306 aaKnown RBP12.39□□□□□ -0.43
HDAC6-230ENST00000488543 CORO1BQ9BR76 489 aa12.39□□□□□ -0.43
HDAC6-230ENST00000488543 TRPC7Q9HCX4 862 aa12.39□□□□□ -0.43
HDAC6-230ENST00000488543 MAN1C1Q9NR34 630 aa12.39□□□□□ -0.43
HDAC6-230ENST00000488543 SMPD4Q9NXE4 827 aa12.39□□□□□ -0.43
HDAC6-230ENST00000488543 ZNF212Q9UDV6 495 aa12.39□□□□□ -0.43
HDAC6-230ENST00000488543 HAO1Q9UJM8 370 aa12.39□□□□□ -0.43
HDAC6-230ENST00000488543 PHTF1Q9UMS5 762 aa12.39□□□□□ -0.43
HDAC6-230ENST00000488543 CNTN5O94779 1100 aa12.38□□□□□ -0.43
HDAC6-230ENST00000488543 ASMTLO95671 621 aa12.38□□□□□ -0.43
HDAC6-230ENST00000488543 JCHAINP01591 159 aa12.38□□□□□ -0.43
HDAC6-230ENST00000488543 RHOQP17081 205 aa12.38□□□□□ -0.43
HDAC6-230ENST00000488543 NFKB1P19838 968 aa12.38□□□□□ -0.43
HDAC6-230ENST00000488543 CA4P22748 312 aa12.38□□□□□ -0.43
HDAC6-230ENST00000488543 GABRR2P28476 465 aa12.38□□□□□ -0.43
HDAC6-230ENST00000488543 ZXDBP98169 803 aa12.38□□□□□ -0.43
HDAC6-230ENST00000488543 OVGP1Q12889 678 aa12.38□□□□□ -0.43
HDAC6-230ENST00000488543 OLIG2Q13516 323 aa12.38□□□□□ -0.43
HDAC6-230ENST00000488543 SPARCL1Q14515 664 aa12.38□□□□□ -0.43
HDAC6-230ENST00000488543 ALFQ53S48 1182 aa12.38□□□□□ -0.43
HDAC6-230ENST00000488543 RAP1GAP2Q684P5 730 aa12.38□□□□□ -0.43
HDAC6-230ENST00000488543 FBXL22Q6P050 247 aa12.38□□□□□ -0.43
HDAC6-230ENST00000488543 ADGRD1Q6QNK2 874 aa12.38□□□□□ -0.43
HDAC6-230ENST00000488543 UNC5AQ6ZN44 842 aa12.38□□□□□ -0.43
HDAC6-230ENST00000488543 KLHDC8BQ8IXV7 354 aa12.38□□□□□ -0.43
HDAC6-230ENST00000488543 ATPAF2Q8N5M1 289 aa12.38□□□□□ -0.43
HDAC6-230ENST00000488543 MZB1Q8WU39 189 aa12.38□□□□□ -0.43
HDAC6-230ENST00000488543 AGAP3Q96P47 875 aa12.38□□□□□ -0.43
HDAC6-230ENST00000488543 VAT1Q99536 393 aa12.38□□□□□ -0.43
HDAC6-230ENST00000488543 LRRC3Q9BY71 257 aa12.38□□□□□ -0.43
HDAC6-230ENST00000488543 SLC28A3Q9HAS3 691 aa12.38□□□□□ -0.43
HDAC6-230ENST00000488543 KLHL14Q9P2G3 628 aa12.38□□□□□ -0.43
HDAC6-230ENST00000488543 PSMC3IPQ9P2W1 217 aaPredicted RBP12.38□□□□□ -0.43
HDAC6-230ENST00000488543 CHKBQ9Y259 395 aa12.38□□□□□ -0.43
HDAC6-230ENST00000488543 HBS1LQ9Y450 684 aaKnown RBP12.38□□□□□ -0.43
HDAC6-230ENST00000488543 ACTL7BQ9Y614 415 aa12.38□□□□□ -0.43
HDAC6-230ENST00000488543 A0A1W2PRU2 124 aa12.38□□□□□ -0.43
HDAC6-230ENST00000488543 DRGXA6NNA5 263 aa12.38□□□□□ -0.43
HDAC6-230ENST00000488543 CACNG3O60359 315 aa12.38□□□□□ -0.43
HDAC6-230ENST00000488543 LPXNO60711 386 aa12.38□□□□□ -0.43
HDAC6-230ENST00000488543 DIAPH2O60879 1101 aa12.38□□□□□ -0.43
HDAC6-230ENST00000488543 CBX6O95503 412 aa12.38□□□□□ -0.43
HDAC6-230ENST00000488543 GBP2P32456 591 aaPredicted RBP12.38□□□□□ -0.43
HDAC6-230ENST00000488543 CCR2P41597 374 aa12.38□□□□□ -0.43
HDAC6-230ENST00000488543 CCDC149Q6ZUS6 474 aa12.38□□□□□ -0.43
HDAC6-230ENST00000488543 UMODL1-AS1Q8N2C9 162 aa12.38□□□□□ -0.43
HDAC6-230ENST00000488543 ARL14EPQ8N8R7 260 aaPredicted RBP12.38□□□□□ -0.43
HDAC6-230ENST00000488543 PDZD8Q8NEN9 1154 aa12.38□□□□□ -0.43
HDAC6-230ENST00000488543 IL12RB2Q99665 862 aa12.38□□□□□ -0.43
HDAC6-230ENST00000488543 ZYG11BQ9C0D3 744 aa12.38□□□□□ -0.43
HDAC6-230ENST00000488543 SMYD2Q9NRG4 433 aa12.38□□□□□ -0.43
HDAC6-230ENST00000488543 TMEM248Q9NWD8 314 aa12.38□□□□□ -0.43
HDAC6-230ENST00000488543 DNMT3LQ9UJW3 386 aa12.38□□□□□ -0.43
HDAC6-230ENST00000488543 HCFC2Q9Y5Z7 792 aa12.38□□□□□ -0.43
HDAC6-230ENST00000488543 CHD5Q8TDI0 1954 aa12.37□□□□□ -0.43
HDAC6-230ENST00000488543 AP2A1O95782 977 aa12.37□□□□□ -0.43
HDAC6-230ENST00000488543 KLKB1P03952 638 aa12.37□□□□□ -0.43
HDAC6-230ENST00000488543 GSTA2P09210 222 aa12.37□□□□□ -0.43
HDAC6-230ENST00000488543 IRF1P10914 325 aa12.37□□□□□ -0.43
HDAC6-230ENST00000488543 MYL4P12829 197 aa12.37□□□□□ -0.43
HDAC6-230ENST00000488543 PRKCHP24723 683 aa12.37□□□□□ -0.43
HDAC6-230ENST00000488543 MSH2P43246 934 aa12.37□□□□□ -0.43
HDAC6-230ENST00000488543 NUMBP49757 651 aa12.37□□□□□ -0.43
HDAC6-230ENST00000488543 PAPOLAP51003 745 aaKnown RBP12.37□□□□□ -0.43
HDAC6-230ENST00000488543 CLNS1AP54105 237 aaKnown RBP12.37□□□□□ -0.43
HDAC6-230ENST00000488543 SARNPP82979 210 aaKnown RBP12.37□□□□□ -0.43
HDAC6-230ENST00000488543 IL9RQ01113 521 aa12.37□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms