RNA–Protein interactions for RNA: ENST00000484954.1

VPS50-216, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 594 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-216ENST00000484954 XRN2Q9H0D6 950 aaKnown RBP eCLIP3.49□□□□□ -1.85
VPS50-216ENST00000484954 ZNF700Q9H0M5 742 aa3.49□□□□□ -1.85
VPS50-216ENST00000484954 PLCB1Q9NQ66 1216 aa3.49□□□□□ -1.85
VPS50-216ENST00000484954 NDUFAF4Q9P032 175 aa3.49□□□□□ -1.85
VPS50-216ENST00000484954 HDAC6Q9UBN7 1215 aa3.49□□□□□ -1.85
VPS50-216ENST00000484954 WNT16Q9UBV4 365 aa3.49□□□□□ -1.85
VPS50-216ENST00000484954 ICKQ9UPZ9 632 aa3.49□□□□□ -1.85
VPS50-216ENST00000484954 OSGIN2Q9Y236 505 aa3.49□□□□□ -1.85
VPS50-216ENST00000484954 MST1RQ04912 1400 aa3.49□□□□□ -1.85
VPS50-216ENST00000484954 HMX3A6NHT5 357 aa3.48□□□□□ -1.85
VPS50-216ENST00000484954 E7EVH7 732 aa3.48□□□□□ -1.85
VPS50-216ENST00000484954 F5H423 210 aaPredicted RBP3.48□□□□□ -1.85
VPS50-216ENST00000484954 KRT38O76015 456 aa3.48□□□□□ -1.85
VPS50-216ENST00000484954 VEGFAP15692 232 aaPredicted RBP3.48□□□□□ -1.85
VPS50-216ENST00000484954 ZNF12P17014 697 aa3.48□□□□□ -1.85
VPS50-216ENST00000484954 CLCN5P51795 746 aa3.48□□□□□ -1.85
VPS50-216ENST00000484954 KRTAP10-5P60370 271 aa3.48□□□□□ -1.85
VPS50-216ENST00000484954 TRIM14Q14142 442 aa3.48□□□□□ -1.85
VPS50-216ENST00000484954 SHBQ15464 509 aa3.48□□□□□ -1.85
VPS50-216ENST00000484954 ZNF628Q5EBL2 1059 aa3.48□□□□□ -1.85
VPS50-216ENST00000484954 FSCBQ5H9T9 825 aa3.48□□□□□ -1.85
VPS50-216ENST00000484954 PDXDC1Q6P996 788 aa3.48□□□□□ -1.85
VPS50-216ENST00000484954 ARMC9Q7Z3E5 817 aa3.48□□□□□ -1.85
VPS50-216ENST00000484954 GALNT7Q86SF2 657 aa3.48□□□□□ -1.85
VPS50-216ENST00000484954 WDR5BQ86VZ2 330 aa3.48□□□□□ -1.85
VPS50-216ENST00000484954 SPICE1Q8N0Z3 855 aa3.48□□□□□ -1.85
VPS50-216ENST00000484954 BICD2Q8TD16 824 aa3.48□□□□□ -1.85
VPS50-216ENST00000484954 HDAC7Q8WUI4 952 aa3.48□□□□□ -1.85
VPS50-216ENST00000484954 FRG2BQ96QU4 278 aa3.48□□□□□ -1.85
VPS50-216ENST00000484954 CADM1Q9BY67 442 aaKnown RBP3.48□□□□□ -1.85
VPS50-216ENST00000484954 KRTAP4-3Q9BYR4 195 aa3.48□□□□□ -1.85
VPS50-216ENST00000484954 LHPPQ9H008 270 aa3.48□□□□□ -1.85
VPS50-216ENST00000484954 CXorf56Q9H5V9 222 aa3.48□□□□□ -1.85
VPS50-216ENST00000484954 THAP1Q9NVV9 213 aa3.48□□□□□ -1.85
VPS50-216ENST00000484954 SRP68Q9UHB9 627 aaKnown RBP3.48□□□□□ -1.85
VPS50-216ENST00000484954 TAGLN3Q9UI15 199 aa3.48□□□□□ -1.85
VPS50-216ENST00000484954 BAG5Q9UL15 447 aa3.48□□□□□ -1.85
VPS50-216ENST00000484954 SAC3D1A6NKF1 404 aa3.47□□□□□ -1.85
VPS50-216ENST00000484954 HNRNPRO43390 633 aaKnown RBP3.47□□□□□ -1.85
VPS50-216ENST00000484954 HLA-DQA2P01906 255 aa3.47□□□□□ -1.85
VPS50-216ENST00000484954 CYP4B1P13584 511 aa3.47□□□□□ -1.85
VPS50-216ENST00000484954 CD72P21854 359 aa3.47□□□□□ -1.85
VPS50-216ENST00000484954 PTPN9P43378 593 aa3.47□□□□□ -1.85
VPS50-216ENST00000484954 CDH12P55289 794 aa3.47□□□□□ -1.85
VPS50-216ENST00000484954 BNC1Q01954 994 aa3.47□□□□□ -1.85
VPS50-216ENST00000484954 GRSF1Q12849 480 aaKnown RBP eCLIP3.47□□□□□ -1.85
VPS50-216ENST00000484954 CUL4BQ13620 913 aa3.47□□□□□ -1.85
VPS50-216ENST00000484954 UBE4AQ14139 1066 aa3.47□□□□□ -1.85
VPS50-216ENST00000484954 SMAD1Q15797 465 aaKnown RBP3.47□□□□□ -1.85
VPS50-216ENST00000484954 AP5B1Q2VPB7 878 aa3.47□□□□□ -1.85
VPS50-216ENST00000484954 CCDC38Q502W7 563 aa3.47□□□□□ -1.85
VPS50-216ENST00000484954 ZNF484Q5JVG2 852 aa3.47□□□□□ -1.85
VPS50-216ENST00000484954 CCDC174Q6PII3 467 aa3.47□□□□□ -1.85
VPS50-216ENST00000484954 SERPINA11Q86U17 422 aa3.47□□□□□ -1.85
VPS50-216ENST00000484954 CLIP4Q8N3C7 705 aa3.47□□□□□ -1.85
VPS50-216ENST00000484954 MIGA1Q8NAN2 632 aa3.47□□□□□ -1.85
VPS50-216ENST00000484954 LINS1Q8NG48 757 aa3.47□□□□□ -1.85
VPS50-216ENST00000484954 GPT2Q8TD30 523 aa3.47□□□□□ -1.85
VPS50-216ENST00000484954 SLITRK1Q96PX8 696 aa3.47□□□□□ -1.85
VPS50-216ENST00000484954 TAF1DQ9H5J8 278 aaPredicted RBP3.47□□□□□ -1.85
VPS50-216ENST00000484954 NLKQ9UBE8 527 aa3.47□□□□□ -1.85
VPS50-216ENST00000484954 EME2A4GXA9 379 aaPredicted RBP3.46□□□□□ -1.86
VPS50-216ENST00000484954 VWA5AO00534 786 aa3.46□□□□□ -1.86
VPS50-216ENST00000484954 ACOT8O14734 319 aa3.46□□□□□ -1.86
VPS50-216ENST00000484954 SOX30O94993 753 aa3.46□□□□□ -1.86
VPS50-216ENST00000484954 ZBTB11O95625 1053 aaPredicted RBP3.46□□□□□ -1.86
VPS50-216ENST00000484954 GLUD1P00367 558 aa3.46□□□□□ -1.86
VPS50-216ENST00000484954 DPP6P42658 865 aa3.46□□□□□ -1.86
VPS50-216ENST00000484954 MTNR1AP48039 350 aa3.46□□□□□ -1.86
VPS50-216ENST00000484954 GLUD2P49448 558 aa3.46□□□□□ -1.86
VPS50-216ENST00000484954 CLCNKBP51801 687 aa3.46□□□□□ -1.86
VPS50-216ENST00000484954 RPS6KA3P51812 740 aa3.46□□□□□ -1.86
VPS50-216ENST00000484954 MVDP53602 400 aa3.46□□□□□ -1.86
VPS50-216ENST00000484954 RRP1P56182 461 aaKnown RBP3.46□□□□□ -1.86
VPS50-216ENST00000484954 FOXO1Q12778 655 aa3.46□□□□□ -1.86
VPS50-216ENST00000484954 KIF5AQ12840 1032 aa3.46□□□□□ -1.86
VPS50-216ENST00000484954 BLMHQ13867 455 aa3.46□□□□□ -1.86
VPS50-216ENST00000484954 MYBPC2Q14324 1141 aa3.46□□□□□ -1.86
VPS50-216ENST00000484954 IZUMO4Q1ZYL8 232 aa3.46□□□□□ -1.86
VPS50-216ENST00000484954 TDRD12Q587J7 1177 aaKnown RBP3.46□□□□□ -1.86
VPS50-216ENST00000484954 C9orf57Q5W0N0 161 aa3.46□□□□□ -1.86
VPS50-216ENST00000484954 FJX1Q86VR8 437 aa3.46□□□□□ -1.86
VPS50-216ENST00000484954 NR2C2APQ86WQ0 139 aa3.46□□□□□ -1.86
VPS50-216ENST00000484954 SLC35F5Q8WV83 523 aa3.46□□□□□ -1.86
VPS50-216ENST00000484954 TMED6Q8WW62 240 aa3.46□□□□□ -1.86
VPS50-216ENST00000484954 RILPL2Q969X0 211 aa3.46□□□□□ -1.86
VPS50-216ENST00000484954 KTI12Q96EK9 354 aaPredicted RBP3.46□□□□□ -1.86
VPS50-216ENST00000484954 IFT27Q9BW83 186 aa3.46□□□□□ -1.86
VPS50-216ENST00000484954 CTDSP1Q9GZU7 261 aa3.46□□□□□ -1.86
VPS50-216ENST00000484954 G6PC2Q9NQR9 355 aa3.46□□□□□ -1.86
VPS50-216ENST00000484954 SEL1LQ9UBV2 794 aa3.46□□□□□ -1.86
VPS50-216ENST00000484954 PCDHGB1Q9Y5G3 927 aa3.46□□□□□ -1.86
VPS50-216ENST00000484954 SCN5AQ14524 2016 aa3.46□□□□□ -1.86
VPS50-216ENST00000484954 A0A087WYN8 130 aa3.45□□□□□ -1.86
VPS50-216ENST00000484954 SRRM3A6NNA2 597 aaPredicted RBP3.45□□□□□ -1.86
VPS50-216ENST00000484954 CBX6O95503 412 aa3.45□□□□□ -1.86
VPS50-216ENST00000484954 PRSS2P07478 247 aa3.45□□□□□ -1.86
VPS50-216ENST00000484954 CST5P28325 142 aaPredicted RBP3.45□□□□□ -1.86
VPS50-216ENST00000484954 RFC1P35251 1148 aaPredicted RBP3.45□□□□□ -1.86
VPS50-216ENST00000484954 COMPP49747 757 aaPredicted RBP3.45□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms