RNA–Protein interactions for RNA: ENST00000484246.5

UPF3A-208, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 699 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-208ENST00000484246 ZNF419Q96HQ0 510 aaPredicted RBP16.19■□□□□ 0.18
UPF3A-208ENST00000484246 SLC39A8Q9C0K1 460 aa16.19■□□□□ 0.18
UPF3A-208ENST00000484246 SGK2Q9HBY8 427 aa16.19■□□□□ 0.18
UPF3A-208ENST00000484246 CHD5Q8TDI0 1954 aa16.18■□□□□ 0.18
UPF3A-208ENST00000484246 TMEM110-MUSTN1A8MSY1 372 aa16.18■□□□□ 0.18
UPF3A-208ENST00000484246 MID1O15344 667 aa16.18■□□□□ 0.18
UPF3A-208ENST00000484246 PSTPIP1O43586 416 aa16.18■□□□□ 0.18
UPF3A-208ENST00000484246 FOXD2O60548 495 aaPredicted RBP16.18■□□□□ 0.18
UPF3A-208ENST00000484246 TMCC1O94876 653 aa16.18■□□□□ 0.18
UPF3A-208ENST00000484246 PRNPP04156 253 aa16.18■□□□□ 0.18
UPF3A-208ENST00000484246 CD48P09326 243 aa16.18■□□□□ 0.18
UPF3A-208ENST00000484246 COMTP21964 271 aa16.18■□□□□ 0.18
UPF3A-208ENST00000484246 AMPD1P23109 780 aa16.18■□□□□ 0.18
UPF3A-208ENST00000484246 SLC8A1P32418 973 aa16.18■□□□□ 0.18
UPF3A-208ENST00000484246 DRD3P35462 400 aa16.18■□□□□ 0.18
UPF3A-208ENST00000484246 RECQLP46063 649 aaPredicted RBP16.18■□□□□ 0.18
UPF3A-208ENST00000484246 PSMD8P48556 350 aa16.18■□□□□ 0.18
UPF3A-208ENST00000484246 RPL6Q02878 288 aaKnown RBP16.18■□□□□ 0.18
UPF3A-208ENST00000484246 RFTN1Q14699 578 aaPredicted RBP16.18■□□□□ 0.18
UPF3A-208ENST00000484246 PAFAH1B3Q15102 231 aaKnown RBP16.18■□□□□ 0.18
UPF3A-208ENST00000484246 ATP13A4Q4VNC1 1196 aa16.18■□□□□ 0.18
UPF3A-208ENST00000484246 DPY19L3Q6ZPD9 716 aa16.18■□□□□ 0.18
UPF3A-208ENST00000484246 CACUL1Q86Y37 369 aa16.18■□□□□ 0.18
UPF3A-208ENST00000484246 LRRC49Q8IUZ0 686 aa16.18■□□□□ 0.18
UPF3A-208ENST00000484246 RHOT1Q8IXI2 618 aa16.18■□□□□ 0.18
UPF3A-208ENST00000484246 AADATQ8N5Z0 425 aa16.18■□□□□ 0.18
UPF3A-208ENST00000484246 ACRBPQ8NEB7 543 aa16.18■□□□□ 0.18
UPF3A-208ENST00000484246 TPCN2Q8NHX9 752 aa16.18■□□□□ 0.18
UPF3A-208ENST00000484246 CELF6Q96J87 481 aaKnown RBP16.18■□□□□ 0.18
UPF3A-208ENST00000484246 LRIG1Q96JA1 1093 aa16.18■□□□□ 0.18
UPF3A-208ENST00000484246 ETNK2Q9NVF9 386 aa16.18■□□□□ 0.18
UPF3A-208ENST00000484246 SALL4Q9UJQ4 1053 aa16.18■□□□□ 0.18
UPF3A-208ENST00000484246 FCF1Q9Y324 198 aaKnown RBP16.18■□□□□ 0.18
UPF3A-208ENST00000484246 EML5Q05BV3 1969 aa16.17■□□□□ 0.18
UPF3A-208ENST00000484246 GOLGA6L3A6NEY3 463 aa16.17■□□□□ 0.18
UPF3A-208ENST00000484246 C3orf70A6NLC5 250 aaPredicted RBP16.17■□□□□ 0.18
UPF3A-208ENST00000484246 MAP3K13O43283 966 aa16.17■□□□□ 0.18
UPF3A-208ENST00000484246 BUB1O43683 1085 aa16.17■□□□□ 0.18
UPF3A-208ENST00000484246 CTSLP07711 333 aa16.17■□□□□ 0.18
UPF3A-208ENST00000484246 CHRNA3P32297 505 aa16.17■□□□□ 0.18
UPF3A-208ENST00000484246 MPLP40238 635 aa16.17■□□□□ 0.18
UPF3A-208ENST00000484246 NOP2P46087 812 aaKnown RBP16.17■□□□□ 0.18
UPF3A-208ENST00000484246 PAPOLAP51003 745 aaKnown RBP16.17■□□□□ 0.18
UPF3A-208ENST00000484246 CCNHP51946 323 aaPredicted RBP16.17■□□□□ 0.18
UPF3A-208ENST00000484246 IL10RBQ08334 325 aa16.17■□□□□ 0.18
UPF3A-208ENST00000484246 MMRN1Q13201 1228 aa16.17■□□□□ 0.18
UPF3A-208ENST00000484246 TAZQ16635 292 aa16.17■□□□□ 0.18
UPF3A-208ENST00000484246 CARD16Q5EG05 197 aa16.17■□□□□ 0.18
UPF3A-208ENST00000484246 LYSMD4Q5XG99 296 aa16.17■□□□□ 0.18
UPF3A-208ENST00000484246 SLC41A1Q8IVJ1 513 aa16.17■□□□□ 0.18
UPF3A-208ENST00000484246 KCTD6Q8NC69 237 aa16.17■□□□□ 0.18
UPF3A-208ENST00000484246 OR2AP1Q8NGE2 309 aa16.17■□□□□ 0.18
UPF3A-208ENST00000484246 PCDH19Q8TAB3 1148 aa16.17■□□□□ 0.18
UPF3A-208ENST00000484246 PIP4K2CQ8TBX8 421 aa16.17■□□□□ 0.18
UPF3A-208ENST00000484246 DNASE2BQ8WZ79 361 aa16.17■□□□□ 0.18
UPF3A-208ENST00000484246 RAPGEF5Q92565 580 aa16.17■□□□□ 0.18
UPF3A-208ENST00000484246 VOPP1Q96AW1 172 aa16.17■□□□□ 0.18
UPF3A-208ENST00000484246 ZNF599Q96NL3 588 aa16.17■□□□□ 0.18
UPF3A-208ENST00000484246 CALN1Q9BXU9 219 aa16.17■□□□□ 0.18
UPF3A-208ENST00000484246 LACRTQ9GZZ8 138 aa16.17■□□□□ 0.18
UPF3A-208ENST00000484246 BTBD1Q9H0C5 482 aa16.17■□□□□ 0.18
UPF3A-208ENST00000484246 TNKS2Q9H2K2 1166 aa16.17■□□□□ 0.18
UPF3A-208ENST00000484246 FBXL12Q9NXK8 326 aa16.17■□□□□ 0.18
UPF3A-208ENST00000484246 DDX56Q9NY93 547 aaKnown RBP16.17■□□□□ 0.18
UPF3A-208ENST00000484246 UBA2Q9UBT2 640 aaPredicted RBP16.17■□□□□ 0.18
UPF3A-208ENST00000484246 SERGEFQ9UGK8 458 aa16.17■□□□□ 0.18
UPF3A-208ENST00000484246 SARDHQ9UL12 918 aa16.17■□□□□ 0.18
UPF3A-208ENST00000484246 TPX2Q9ULW0 747 aaKnown RBP16.17■□□□□ 0.18
UPF3A-208ENST00000484246 TFR2Q9UP52 801 aa16.17■□□□□ 0.18
UPF3A-208ENST00000484246 NCKAP1Q9Y2A7 1128 aa16.17■□□□□ 0.18
UPF3A-208ENST00000484246 MFHAS1Q9Y4C4 1052 aa16.17■□□□□ 0.18
UPF3A-208ENST00000484246 ACTL7AQ9Y615 435 aa16.17■□□□□ 0.18
UPF3A-208ENST00000484246 ALG6Q9Y672 507 aa16.17■□□□□ 0.18
UPF3A-208ENST00000484246 WASF2Q9Y6W5 498 aa16.17■□□□□ 0.18
UPF3A-208ENST00000484246 VPS13AQ96RL7 3174 aa16.17■□□□□ 0.18
UPF3A-208ENST00000484246 DMDP11532 3685 aa16.17■□□□□ 0.18
UPF3A-208ENST00000484246 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa16.16■□□□□ 0.18
UPF3A-208ENST00000484246 ARHGAP6O43182 974 aa16.16■□□□□ 0.18
UPF3A-208ENST00000484246 SPOPO43791 374 aa16.16■□□□□ 0.18
UPF3A-208ENST00000484246 NDUFS2O75306 463 aa16.16■□□□□ 0.18
UPF3A-208ENST00000484246 SEMA4FO95754 770 aa16.16■□□□□ 0.18
UPF3A-208ENST00000484246 IL1BP01584 269 aa16.16■□□□□ 0.18
UPF3A-208ENST00000484246 KDELR1P24390 212 aa16.16■□□□□ 0.18
UPF3A-208ENST00000484246 GJC1P36383 396 aa16.16■□□□□ 0.18
UPF3A-208ENST00000484246 PTGER3P43115 390 aa16.16■□□□□ 0.18
UPF3A-208ENST00000484246 SNRPD1P62314 119 aaKnown RBP16.16■□□□□ 0.18
UPF3A-208ENST00000484246 ZNF33AQ06730 810 aa16.16■□□□□ 0.18
UPF3A-208ENST00000484246 GALNT2Q10471 571 aa16.16■□□□□ 0.18
UPF3A-208ENST00000484246 CSRP2Q16527 193 aa16.16■□□□□ 0.18
UPF3A-208ENST00000484246 ANKRD20A8PQ5CZ79 823 aa16.16■□□□□ 0.18
UPF3A-208ENST00000484246 TMCO4Q5TGY1 634 aa16.16■□□□□ 0.18
UPF3A-208ENST00000484246 NCBP2-AS2Q69YL0 99 aa16.16■□□□□ 0.18
UPF3A-208ENST00000484246 CYP2U1Q7Z449 544 aa16.16■□□□□ 0.18
UPF3A-208ENST00000484246 TMEFF1Q8IYR6 380 aa16.16■□□□□ 0.18
UPF3A-208ENST00000484246 PQLC3Q8N755 202 aa16.16■□□□□ 0.18
UPF3A-208ENST00000484246 CHST14Q8NCH0 376 aa16.16■□□□□ 0.18
UPF3A-208ENST00000484246 FATE1Q969F0 183 aa16.16■□□□□ 0.18
UPF3A-208ENST00000484246 GDAP1L1Q96MZ0 367 aa16.16■□□□□ 0.18
UPF3A-208ENST00000484246 HEPHQ9BQS7 1158 aa16.16■□□□□ 0.18
UPF3A-208ENST00000484246 KDM4CQ9H3R0 1056 aa16.16■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms