RNA–Protein interactions for RNA: ENST00000483216.1

USP40-213, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 641 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-213ENST00000483216 ANP32CO43423 234 aa6.39□□□□□ -1.39
USP40-213ENST00000483216 MYZAPP0CAP1 466 aa6.39□□□□□ -1.39
USP40-213ENST00000483216 CPA1P15085 419 aa6.39□□□□□ -1.39
USP40-213ENST00000483216 CLCNKBP51801 687 aa6.39□□□□□ -1.39
USP40-213ENST00000483216 PPATQ06203 517 aa6.39□□□□□ -1.39
USP40-213ENST00000483216 SLC12A1Q13621 1099 aa6.39□□□□□ -1.39
USP40-213ENST00000483216 SYTL3Q4VX76 610 aa6.39□□□□□ -1.39
USP40-213ENST00000483216 SH2D4BQ5SQS7 431 aa6.39□□□□□ -1.39
USP40-213ENST00000483216 WASHC2DQ5SRD0 308 aa6.39□□□□□ -1.39
USP40-213ENST00000483216 MAP3K21Q5TCX8 1036 aa6.39□□□□□ -1.39
USP40-213ENST00000483216 BBS12Q6ZW61 710 aa6.39□□□□□ -1.39
USP40-213ENST00000483216 ZDHHC23Q8IYP9 409 aa6.39□□□□□ -1.39
USP40-213ENST00000483216 LRRC57Q8N9N7 239 aa6.39□□□□□ -1.39
USP40-213ENST00000483216 SETD9Q8NE22 299 aa6.39□□□□□ -1.39
USP40-213ENST00000483216 HERVK_113Q902F9 699 aa6.39□□□□□ -1.39
USP40-213ENST00000483216 ZNF333Q96JL9 665 aa6.39□□□□□ -1.39
USP40-213ENST00000483216 REEP2Q9BRK0 252 aa6.39□□□□□ -1.39
USP40-213ENST00000483216 RIC8AQ9NPQ8 531 aa6.39□□□□□ -1.39
USP40-213ENST00000483216 HDAC6Q9UBN7 1215 aa6.39□□□□□ -1.39
USP40-213ENST00000483216 CDH22Q9UJ99 828 aa6.39□□□□□ -1.39
USP40-213ENST00000483216 RAP2CQ9Y3L5 183 aa6.39□□□□□ -1.39
USP40-213ENST00000483216 FANCIQ9NVI1 1328 aa6.39□□□□□ -1.39
USP40-213ENST00000483216 CFTRP13569 1480 aa6.39□□□□□ -1.39
USP40-213ENST00000483216 KIF1CO43896 1103 aaKnown RBP6.38□□□□□ -1.39
USP40-213ENST00000483216 HBP1O60381 514 aa6.38□□□□□ -1.39
USP40-213ENST00000483216 FOXG1P55316 489 aaPredicted RBP6.38□□□□□ -1.39
USP40-213ENST00000483216 TBC1D9BQ66K14 1250 aa6.38□□□□□ -1.39
USP40-213ENST00000483216 CYP26C1Q6V0L0 522 aa6.38□□□□□ -1.39
USP40-213ENST00000483216 C9orf47Q6ZRZ4 202 aa6.38□□□□□ -1.39
USP40-213ENST00000483216 ENGASEQ8NFI3 743 aa6.38□□□□□ -1.39
USP40-213ENST00000483216 GABPB2Q8TAK5 448 aaPredicted RBP6.38□□□□□ -1.39
USP40-213ENST00000483216 STN1Q9H668 368 aaKnown RBP6.38□□□□□ -1.39
USP40-213ENST00000483216 NOL12Q9UGY1 213 aaKnown RBP eCLIP6.38□□□□□ -1.39
USP40-213ENST00000483216 CLDN16Q9Y5I7 305 aa6.38□□□□□ -1.39
USP40-213ENST00000483216 TARSL2A2RTX5 802 aaKnown RBP6.37□□□□□ -1.39
USP40-213ENST00000483216 EIF3FO00303 357 aaPredicted RBP6.37□□□□□ -1.39
USP40-213ENST00000483216 INSIG1O15503 277 aa6.37□□□□□ -1.39
USP40-213ENST00000483216 KLK10O43240 276 aa6.37□□□□□ -1.39
USP40-213ENST00000483216 CKMT1AP12532 417 aa6.37□□□□□ -1.39
USP40-213ENST00000483216 CHRNB2P17787 502 aa6.37□□□□□ -1.39
USP40-213ENST00000483216 PPM1FP49593 454 aaPredicted RBP6.37□□□□□ -1.39
USP40-213ENST00000483216 PGGT1BP53609 377 aa6.37□□□□□ -1.39
USP40-213ENST00000483216 TBL3Q12788 808 aaKnown RBP6.37□□□□□ -1.39
USP40-213ENST00000483216 BIRC3Q13489 604 aa6.37□□□□□ -1.39
USP40-213ENST00000483216 RPE65Q16518 533 aa6.37□□□□□ -1.39
USP40-213ENST00000483216 DUSP6Q16828 381 aa6.37□□□□□ -1.39
USP40-213ENST00000483216 TMEM71Q6P5X7 295 aa6.37□□□□□ -1.39
USP40-213ENST00000483216 LVRNQ6Q4G3 990 aa6.37□□□□□ -1.39
USP40-213ENST00000483216 SERPINA11Q86U17 422 aa6.37□□□□□ -1.39
USP40-213ENST00000483216 TRIM74Q86UV6 250 aa6.37□□□□□ -1.39
USP40-213ENST00000483216 TRIM73Q86UV7 250 aa6.37□□□□□ -1.39
USP40-213ENST00000483216 CPOQ8IVL8 374 aa6.37□□□□□ -1.39
USP40-213ENST00000483216 PELI3Q8N2H9 469 aa6.37□□□□□ -1.39
USP40-213ENST00000483216 C9orf106Q8NAJ2 232 aa6.37□□□□□ -1.39
USP40-213ENST00000483216 MYRIPQ8NFW9 859 aa6.37□□□□□ -1.39
USP40-213ENST00000483216 EBF3Q9H4W6 596 aa6.37□□□□□ -1.39
USP40-213ENST00000483216 KLHL31Q9H511 634 aa6.37□□□□□ -1.39
USP40-213ENST00000483216 TTC12Q9H892 705 aaPredicted RBP6.37□□□□□ -1.39
USP40-213ENST00000483216 KRCC1Q9NPI7 259 aaPredicted RBP6.37□□□□□ -1.39
USP40-213ENST00000483216 SEL1LQ9UBV2 794 aa6.37□□□□□ -1.39
USP40-213ENST00000483216 PLEKHB1Q9UF11 243 aaPredicted RBP6.37□□□□□ -1.39
USP40-213ENST00000483216 CUX1P39880 1505 aa6.36□□□□□ -1.39
USP40-213ENST00000483216 RPS10-NUDT3A0A1W2PQS6 291 aa6.36□□□□□ -1.39
USP40-213ENST00000483216 STMND1H3BQB6 276 aa6.36□□□□□ -1.39
USP40-213ENST00000483216 PEX12O00623 359 aa6.36□□□□□ -1.39
USP40-213ENST00000483216 CBX6O95503 412 aa6.36□□□□□ -1.39
USP40-213ENST00000483216 WEE2P0C1S8 567 aa6.36□□□□□ -1.39
USP40-213ENST00000483216 ARSBP15848 533 aa6.36□□□□□ -1.39
USP40-213ENST00000483216 RFX2P48378 723 aa6.36□□□□□ -1.39
USP40-213ENST00000483216 SELENOVP59797 346 aa6.36□□□□□ -1.39
USP40-213ENST00000483216 UBE3AQ05086 875 aa6.36□□□□□ -1.39
USP40-213ENST00000483216 ZNF354CQ86Y25 554 aa6.36□□□□□ -1.39
USP40-213ENST00000483216 CPXCR1Q8N123 301 aa6.36□□□□□ -1.39
USP40-213ENST00000483216 HORMAD2Q8N7B1 307 aa6.36□□□□□ -1.39
USP40-213ENST00000483216 C7orf57Q8NEG2 295 aa6.36□□□□□ -1.39
USP40-213ENST00000483216 URB1-AS1Q96HZ7 61 aa6.36□□□□□ -1.39
USP40-213ENST00000483216 UBXN10Q96LJ8 280 aa6.36□□□□□ -1.39
USP40-213ENST00000483216 CAMK1GQ96NX5 476 aa6.36□□□□□ -1.39
USP40-213ENST00000483216 ATP8A2Q9NTI2 1148 aa6.36□□□□□ -1.39
USP40-213ENST00000483216 FANCD2Q9BXW9 1451 aa6.35□□□□□ -1.39
USP40-213ENST00000483216 FAM90A7PA6NKC0 464 aa6.35□□□□□ -1.39
USP40-213ENST00000483216 SH2D7A6NKC9 451 aaPredicted RBP6.35□□□□□ -1.39
USP40-213ENST00000483216 FAM90A22PA8MWA6 464 aa6.35□□□□□ -1.39
USP40-213ENST00000483216 FAM90A12PA8MX19 464 aa6.35□□□□□ -1.39
USP40-213ENST00000483216 FAM90A23PA8MXZ1 464 aa6.35□□□□□ -1.39
USP40-213ENST00000483216 HSPB6O14558 160 aa6.35□□□□□ -1.39
USP40-213ENST00000483216 KCNAB3O43448 404 aa6.35□□□□□ -1.39
USP40-213ENST00000483216 YWHAQP27348 245 aa6.35□□□□□ -1.39
USP40-213ENST00000483216 DPP6P42658 865 aa6.35□□□□□ -1.39
USP40-213ENST00000483216 PTPN9P43378 593 aa6.35□□□□□ -1.39
USP40-213ENST00000483216 CHRNDQ07001 517 aa6.35□□□□□ -1.39
USP40-213ENST00000483216 TAF12Q16514 161 aa6.35□□□□□ -1.39
USP40-213ENST00000483216 TMEM95Q3KNT9 176 aa6.35□□□□□ -1.39
USP40-213ENST00000483216 WDR45BQ5MNZ6 344 aa6.35□□□□□ -1.39
USP40-213ENST00000483216 NAPEPLDQ6IQ20 393 aa6.35□□□□□ -1.39
USP40-213ENST00000483216 HEPHL1Q6MZM0 1159 aa6.35□□□□□ -1.39
USP40-213ENST00000483216 ZNF549Q6P9A3 640 aa6.35□□□□□ -1.39
USP40-213ENST00000483216 CTU1Q7Z7A3 348 aaKnown RBP6.35□□□□□ -1.39
USP40-213ENST00000483216 LRRTM4Q86VH4 590 aa6.35□□□□□ -1.39
USP40-213ENST00000483216 TMC8Q8IU68 726 aa6.35□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms