RNA–Protein interactions for RNA: ENST00000478214.1

HMGA1-206, Transcript of high mobility group AT-hook 1, humanhuman

TSL 1 (best)

Gene HMGA1, Length 716 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-206ENST00000478214 DNA2P51530 1060 aa15.9■□□□□ 0.14
HMGA1-206ENST00000478214 YBEYP58557 167 aaPredicted RBP15.9■□□□□ 0.14
HMGA1-206ENST00000478214 SLC25A11Q02978 314 aaKnown RBP15.9■□□□□ 0.14
HMGA1-206ENST00000478214 PARP15Q460N3 678 aa15.9■□□□□ 0.14
HMGA1-206ENST00000478214 BOLA3Q53S33 107 aa15.9■□□□□ 0.14
HMGA1-206ENST00000478214 FAM46CQ5VWP2 391 aa15.9■□□□□ 0.14
HMGA1-206ENST00000478214 SLC23A3Q6PIS1 610 aa15.9■□□□□ 0.14
HMGA1-206ENST00000478214 DPY19L3Q6ZPD9 716 aa15.9■□□□□ 0.14
HMGA1-206ENST00000478214 PCDH20Q8N6Y1 951 aaKnown RBP15.9■□□□□ 0.14
HMGA1-206ENST00000478214 PIP4K2CQ8TBX8 421 aa15.9■□□□□ 0.14
HMGA1-206ENST00000478214 NETO1Q8TDF5 533 aa15.9■□□□□ 0.14
HMGA1-206ENST00000478214 HSPH1Q92598 858 aa15.9■□□□□ 0.14
HMGA1-206ENST00000478214 CCDC114Q96M63 670 aa15.9■□□□□ 0.14
HMGA1-206ENST00000478214 CEP44Q9C0F1 390 aa15.9■□□□□ 0.14
HMGA1-206ENST00000478214 MIR1-1HGQ9H1L0 117 aa15.9■□□□□ 0.14
HMGA1-206ENST00000478214 PCED1AQ9H1Q7 454 aa15.9■□□□□ 0.14
HMGA1-206ENST00000478214 DLL3Q9NYJ7 618 aa15.9■□□□□ 0.14
HMGA1-206ENST00000478214 CWC15Q9P013 229 aaKnown RBP15.9■□□□□ 0.14
HMGA1-206ENST00000478214 UVRAGQ9P2Y5 699 aa15.9■□□□□ 0.14
HMGA1-206ENST00000478214 CDV3Q9UKY7 258 aaKnown RBP15.9■□□□□ 0.14
HMGA1-206ENST00000478214 FZD4Q9ULV1 537 aa15.9■□□□□ 0.14
HMGA1-206ENST00000478214 HPCAL4Q9UM19 191 aa15.9■□□□□ 0.14
HMGA1-206ENST00000478214 FARP1Q9Y4F1 1045 aaPredicted RBP15.9■□□□□ 0.14
HMGA1-206ENST00000478214 DNAH14Q0VDD8 3507 aa15.9■□□□□ 0.14
HMGA1-206ENST00000478214 NUP205Q92621 2012 aa15.89■□□□□ 0.13
HMGA1-206ENST00000478214 DCHS1Q96JQ0 3298 aa15.89■□□□□ 0.13
HMGA1-206ENST00000478214 CXorf51AA0A1B0GTR3 108 aa15.89■□□□□ 0.13
HMGA1-206ENST00000478214 C1QTNF3-AMACRE9PGA6 284 aa15.89■□□□□ 0.13
HMGA1-206ENST00000478214 RNF103O00237 685 aa15.89■□□□□ 0.13
HMGA1-206ENST00000478214 BUB1O43683 1085 aa15.89■□□□□ 0.13
HMGA1-206ENST00000478214 SSR1P43307 286 aaKnown RBP15.89■□□□□ 0.13
HMGA1-206ENST00000478214 RECQLP46063 649 aaPredicted RBP15.89■□□□□ 0.13
HMGA1-206ENST00000478214 GEMIN4P57678 1058 aaKnown RBP15.89■□□□□ 0.13
HMGA1-206ENST00000478214 SERINC3Q13530 473 aa15.89■□□□□ 0.13
HMGA1-206ENST00000478214 DPYSL2Q16555 572 aa15.89■□□□□ 0.13
HMGA1-206ENST00000478214 DUOXA1Q1HG43 343 aa15.89■□□□□ 0.13
HMGA1-206ENST00000478214 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP15.89■□□□□ 0.13
HMGA1-206ENST00000478214 CEP76Q8TAP6 659 aa15.89■□□□□ 0.13
HMGA1-206ENST00000478214 GRIN3AQ8TCU5 1115 aa15.89■□□□□ 0.13
HMGA1-206ENST00000478214 SNX19Q92543 992 aa15.89■□□□□ 0.13
HMGA1-206ENST00000478214 BIRC7Q96CA5 298 aa15.89■□□□□ 0.13
HMGA1-206ENST00000478214 CELF6Q96J87 481 aaKnown RBP15.89■□□□□ 0.13
HMGA1-206ENST00000478214 EDEM2Q9BV94 578 aa15.89■□□□□ 0.13
HMGA1-206ENST00000478214 NUSAP1Q9BXS6 441 aaKnown RBP15.89■□□□□ 0.13
HMGA1-206ENST00000478214 TM6SF2Q9BZW4 377 aa15.89■□□□□ 0.13
HMGA1-206ENST00000478214 LRRC19Q9H756 370 aa15.89■□□□□ 0.13
HMGA1-206ENST00000478214 OSGEPQ9NPF4 335 aa15.89■□□□□ 0.13
HMGA1-206ENST00000478214 FSCN3Q9NQT6 498 aa15.89■□□□□ 0.13
HMGA1-206ENST00000478214 STAU2Q9NUL3 570 aaKnown RBP eCLIP15.89■□□□□ 0.13
HMGA1-206ENST00000478214 EIF2B4Q9UI10 523 aaKnown RBP15.89■□□□□ 0.13
HMGA1-206ENST00000478214 ZBTB32Q9Y2Y4 487 aaPredicted RBP15.89■□□□□ 0.13
HMGA1-206ENST00000478214 TNRC6BQ9UPQ9 1833 aaKnown RBP15.89■□□□□ 0.13
HMGA1-206ENST00000478214 ZSCAN5CA6NGD5 496 aaPredicted RBP15.88■□□□□ 0.13
HMGA1-206ENST00000478214 KPNA3O00505 521 aaPredicted RBP15.88■□□□□ 0.13
HMGA1-206ENST00000478214 PROSCO94903 275 aa15.88■□□□□ 0.13
HMGA1-206ENST00000478214 FSBPO95073 299 aa15.88■□□□□ 0.13
HMGA1-206ENST00000478214 SERPINF2P08697 491 aa15.88■□□□□ 0.13
HMGA1-206ENST00000478214 HCAR3P49019 387 aa15.88■□□□□ 0.13
HMGA1-206ENST00000478214 ZNF135P52742 658 aaPredicted RBP15.88■□□□□ 0.13
HMGA1-206ENST00000478214 NDST2P52849 883 aa15.88■□□□□ 0.13
HMGA1-206ENST00000478214 CNTN1Q12860 1018 aa15.88■□□□□ 0.13
HMGA1-206ENST00000478214 DPYSQ14117 519 aa15.88■□□□□ 0.13
HMGA1-206ENST00000478214 CARD16Q5EG05 197 aa15.88■□□□□ 0.13
HMGA1-206ENST00000478214 ARSIQ5FYB1 569 aa15.88■□□□□ 0.13
HMGA1-206ENST00000478214 STPG1Q5TH74 334 aa15.88■□□□□ 0.13
HMGA1-206ENST00000478214 NCEH1Q6PIU2 408 aa15.88■□□□□ 0.13
HMGA1-206ENST00000478214 POLNQ7Z5Q5 900 aa15.88■□□□□ 0.13
HMGA1-206ENST00000478214 ZCCHC9Q8N567 271 aaKnown RBP15.88■□□□□ 0.13
HMGA1-206ENST00000478214 NETO2Q8NC67 525 aa15.88■□□□□ 0.13
HMGA1-206ENST00000478214 OR14C36Q8NHC7 312 aa15.88■□□□□ 0.13
HMGA1-206ENST00000478214 TEKT4Q8WW24 435 aa15.88■□□□□ 0.13
HMGA1-206ENST00000478214 ISG20Q96AZ6 181 aaKnown RBP15.88■□□□□ 0.13
HMGA1-206ENST00000478214 SLC39A8Q9C0K1 460 aa15.88■□□□□ 0.13
HMGA1-206ENST00000478214 CAPN10Q9HC96 672 aa15.88■□□□□ 0.13
HMGA1-206ENST00000478214 PCDH18Q9HCL0 1135 aa15.88■□□□□ 0.13
HMGA1-206ENST00000478214 DONSONQ9NYP3 566 aa15.88■□□□□ 0.13
HMGA1-206ENST00000478214 SUSD2Q9UGT4 822 aa15.88■□□□□ 0.13
HMGA1-206ENST00000478214 IL36AQ9UHA7 158 aa15.88■□□□□ 0.13
HMGA1-206ENST00000478214 SLC6A14Q9UN76 642 aa15.88■□□□□ 0.13
HMGA1-206ENST00000478214 SLCO1B1Q9Y6L6 691 aa15.88■□□□□ 0.13
HMGA1-206ENST00000478214 LRRC72A6NJI9 287 aa15.87■□□□□ 0.13
HMGA1-206ENST00000478214 TMEM110-MUSTN1A8MSY1 372 aa15.87■□□□□ 0.13
HMGA1-206ENST00000478214 H3BRJ5 948 aa15.87■□□□□ 0.13
HMGA1-206ENST00000478214 SLC30A4O14863 429 aa15.87■□□□□ 0.13
HMGA1-206ENST00000478214 LEFTY1O75610 366 aa15.87■□□□□ 0.13
HMGA1-206ENST00000478214 TMCC1O94876 653 aa15.87■□□□□ 0.13
HMGA1-206ENST00000478214 PRNPP04156 253 aa15.87■□□□□ 0.13
HMGA1-206ENST00000478214 IGHV4-34P06331 123 aa15.87■□□□□ 0.13
HMGA1-206ENST00000478214 GNSP15586 552 aa15.87■□□□□ 0.13
HMGA1-206ENST00000478214 SDHBP21912 280 aa15.87■□□□□ 0.13
HMGA1-206ENST00000478214 AMPD1P23109 780 aa15.87■□□□□ 0.13
HMGA1-206ENST00000478214 GJC1P36383 396 aa15.87■□□□□ 0.13
HMGA1-206ENST00000478214 ARL4AP40617 200 aa15.87■□□□□ 0.13
HMGA1-206ENST00000478214 PAPOLAP51003 745 aaKnown RBP15.87■□□□□ 0.13
HMGA1-206ENST00000478214 CCNHP51946 323 aaPredicted RBP15.87■□□□□ 0.13
HMGA1-206ENST00000478214 ADPRHP54922 357 aa15.87■□□□□ 0.13
HMGA1-206ENST00000478214 PUM1Q14671 1186 aaKnown RBP eCLIP15.87■□□□□ 0.13
HMGA1-206ENST00000478214 ATP13A4Q4VNC1 1196 aa15.87■□□□□ 0.13
HMGA1-206ENST00000478214 KIAA0895LQ68EN5 471 aa15.87■□□□□ 0.13
HMGA1-206ENST00000478214 RABEPKQ7Z6M1 372 aa15.87■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms