RNA–Protein interactions for RNA: ENST00000478095.1

HDAC6-222, Transcript of histone deacetylase 6, human

TSL 4

Gene HDAC6, Length 620 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HDAC6-222	ENST00000478095	TARSL2	A2RTX5	802 aa	Known RBP	10.47	□□□□□ -0.73
HDAC6-222	ENST00000478095	PROB1	E7EW31	1015 aa		10.47	□□□□□ -0.73
HDAC6-222	ENST00000478095		J3KR12	359 aa		10.47	□□□□□ -0.73
HDAC6-222	ENST00000478095	MID1	O15344	667 aa		10.47	□□□□□ -0.73
HDAC6-222	ENST00000478095	GFRA3	O60609	400 aa		10.47	□□□□□ -0.73
HDAC6-222	ENST00000478095	RNASEH1	O60930	286 aa	Known RBP	10.47	□□□□□ -0.73
HDAC6-222	ENST00000478095	ZNF217	O75362	1048 aa		10.47	□□□□□ -0.73
HDAC6-222	ENST00000478095	ZNF821	O75541	412 aa	Predicted RBP	10.47	□□□□□ -0.73
HDAC6-222	ENST00000478095	TMCC1	O94876	653 aa		10.47	□□□□□ -0.73
HDAC6-222	ENST00000478095	IL1B	P01584	269 aa		10.47	□□□□□ -0.73
HDAC6-222	ENST00000478095	DNTT	P04053	509 aa		10.47	□□□□□ -0.73
HDAC6-222	ENST00000478095	KDELR1	P24390	212 aa		10.47	□□□□□ -0.73
HDAC6-222	ENST00000478095	MARCKSL1	P49006	195 aa		10.47	□□□□□ -0.73
HDAC6-222	ENST00000478095	MRE11	P49959	708 aa		10.47	□□□□□ -0.73
HDAC6-222	ENST00000478095	TPMT	P51580	245 aa		10.47	□□□□□ -0.73
HDAC6-222	ENST00000478095	NDST2	P52849	883 aa		10.47	□□□□□ -0.73
HDAC6-222	ENST00000478095	ELAVL3	Q14576	367 aa	Known RBP	10.47	□□□□□ -0.73
HDAC6-222	ENST00000478095	CST6	Q15828	149 aa		10.47	□□□□□ -0.73
HDAC6-222	ENST00000478095	PLK5	Q496M5	336 aa		10.47	□□□□□ -0.73
HDAC6-222	ENST00000478095	AFMID	Q63HM1	303 aa		10.47	□□□□□ -0.73
HDAC6-222	ENST00000478095	C11orf63	Q6NUN7	778 aa		10.47	□□□□□ -0.73
HDAC6-222	ENST00000478095	DAAM2	Q86T65	1068 aa		10.47	□□□□□ -0.73
HDAC6-222	ENST00000478095	LRRC8A	Q8IWT6	810 aa		10.47	□□□□□ -0.73
HDAC6-222	ENST00000478095	RHOT1	Q8IXI2	618 aa		10.47	□□□□□ -0.73
HDAC6-222	ENST00000478095	TMEFF1	Q8IYR6	380 aa		10.47	□□□□□ -0.73
HDAC6-222	ENST00000478095	CHST14	Q8NCH0	376 aa		10.47	□□□□□ -0.73
HDAC6-222	ENST00000478095	OR2A12	Q8NGT7	310 aa		10.47	□□□□□ -0.73
HDAC6-222	ENST00000478095	OR6K2	Q8NGY2	324 aa		10.47	□□□□□ -0.73
HDAC6-222	ENST00000478095	PCDH19	Q8TAB3	1148 aa		10.47	□□□□□ -0.73
HDAC6-222	ENST00000478095	FAM71B	Q8TC56	605 aa		10.47	□□□□□ -0.73
HDAC6-222	ENST00000478095	GRIN3A	Q8TCU5	1115 aa		10.47	□□□□□ -0.73
HDAC6-222	ENST00000478095	GANC	Q8TET4	914 aa		10.47	□□□□□ -0.73
HDAC6-222	ENST00000478095	OR8D1	Q8WZ84	308 aa		10.47	□□□□□ -0.73
HDAC6-222	ENST00000478095	HINFP	Q9BQA5	517 aa		10.47	□□□□□ -0.73
HDAC6-222	ENST00000478095	ZNF670	Q9BS34	389 aa		10.47	□□□□□ -0.73
HDAC6-222	ENST00000478095	DUSP15	Q9H1R2	295 aa	Predicted RBP	10.47	□□□□□ -0.73
HDAC6-222	ENST00000478095	FBRS	Q9HAH7	460 aa		10.47	□□□□□ -0.73
HDAC6-222	ENST00000478095	DONSON	Q9NYP3	566 aa		10.47	□□□□□ -0.73
HDAC6-222	ENST00000478095	USP36	Q9P275	1121 aa	Known RBP	10.47	□□□□□ -0.73
HDAC6-222	ENST00000478095	RCOR3	Q9P2K3	495 aa	Predicted RBP	10.47	□□□□□ -0.73
HDAC6-222	ENST00000478095	SERGEF	Q9UGK8	458 aa		10.47	□□□□□ -0.73
HDAC6-222	ENST00000478095	ALG6	Q9Y672	507 aa		10.47	□□□□□ -0.73
HDAC6-222	ENST00000478095		A0A1W2PP55	124 aa		10.46	□□□□□ -0.73
HDAC6-222	ENST00000478095	ARHGAP42	A6NI28	874 aa		10.46	□□□□□ -0.73
HDAC6-222	ENST00000478095	BTNL10	A8MVZ5	291 aa		10.46	□□□□□ -0.73
HDAC6-222	ENST00000478095	BHMG1	C9JSJ3	638 aa	Predicted RBP	10.46	□□□□□ -0.73
HDAC6-222	ENST00000478095	RNF103	O00237	685 aa		10.46	□□□□□ -0.73
HDAC6-222	ENST00000478095	PLK4	O00444	970 aa		10.46	□□□□□ -0.73
HDAC6-222	ENST00000478095	PJA2	O43164	708 aa		10.46	□□□□□ -0.73
HDAC6-222	ENST00000478095	ARHGAP6	O43182	974 aa		10.46	□□□□□ -0.73
HDAC6-222	ENST00000478095	MFSD11	O43934	449 aa		10.46	□□□□□ -0.73
HDAC6-222	ENST00000478095	MAP3K6	O95382	1288 aa		10.46	□□□□□ -0.73
HDAC6-222	ENST00000478095	CTSL	P07711	333 aa		10.46	□□□□□ -0.73
HDAC6-222	ENST00000478095	CD6	P30203	668 aa		10.46	□□□□□ -0.73
HDAC6-222	ENST00000478095	SLC8A1	P32418	973 aa		10.46	□□□□□ -0.73
HDAC6-222	ENST00000478095	RECQL	P46063	649 aa	Predicted RBP	10.46	□□□□□ -0.73
HDAC6-222	ENST00000478095	CCZ1B	P86790	482 aa		10.46	□□□□□ -0.73
HDAC6-222	ENST00000478095	CCZ1	P86791	482 aa	Predicted RBP	10.46	□□□□□ -0.73
HDAC6-222	ENST00000478095	RPL6	Q02878	288 aa	Known RBP	10.46	□□□□□ -0.73
HDAC6-222	ENST00000478095	SLC20A2	Q08357	652 aa		10.46	□□□□□ -0.73
HDAC6-222	ENST00000478095	KIF5A	Q12840	1032 aa		10.46	□□□□□ -0.73
HDAC6-222	ENST00000478095	BYSL	Q13895	437 aa	Known RBP	10.46	□□□□□ -0.73
HDAC6-222	ENST00000478095	PDK2	Q15119	407 aa		10.46	□□□□□ -0.73
HDAC6-222	ENST00000478095	LLGL1	Q15334	1064 aa		10.46	□□□□□ -0.73
HDAC6-222	ENST00000478095	ELF2	Q15723	593 aa		10.46	□□□□□ -0.73
HDAC6-222	ENST00000478095	TTC31	Q49AM3	519 aa	Predicted RBP	10.46	□□□□□ -0.73
HDAC6-222	ENST00000478095	ODF2	Q5BJF6	829 aa		10.46	□□□□□ -0.73
HDAC6-222	ENST00000478095	ANKRD20A8P	Q5CZ79	823 aa		10.46	□□□□□ -0.73
HDAC6-222	ENST00000478095	ATXN7L2	Q5T6C5	722 aa	Predicted RBP	10.46	□□□□□ -0.73
HDAC6-222	ENST00000478095	LRRC38	Q5VT99	294 aa		10.46	□□□□□ -0.73
HDAC6-222	ENST00000478095	PMS2CL	Q68D20	193 aa		10.46	□□□□□ -0.73
HDAC6-222	ENST00000478095	NCBP2-AS2	Q69YL0	99 aa		10.46	□□□□□ -0.73
HDAC6-222	ENST00000478095	DPY19L3	Q6ZPD9	716 aa		10.46	□□□□□ -0.73
HDAC6-222	ENST00000478095	MAP7D3	Q8IWC1	876 aa		10.46	□□□□□ -0.73
HDAC6-222	ENST00000478095	RYBP	Q8N488	228 aa	Predicted RBP	10.46	□□□□□ -0.73
HDAC6-222	ENST00000478095	DCLK2	Q8N568	766 aa		10.46	□□□□□ -0.73
HDAC6-222	ENST00000478095	CCDC112	Q8NEF3	446 aa		10.46	□□□□□ -0.73
HDAC6-222	ENST00000478095	KRT35	Q92764	455 aa		10.46	□□□□□ -0.73
HDAC6-222	ENST00000478095	KCTD12	Q96CX2	325 aa	Known RBP	10.46	□□□□□ -0.73
HDAC6-222	ENST00000478095	TOE1	Q96GM8	510 aa	Known RBP	10.46	□□□□□ -0.73
HDAC6-222	ENST00000478095	EXOC2	Q96KP1	924 aa		10.46	□□□□□ -0.73
HDAC6-222	ENST00000478095	CCDC114	Q96M63	670 aa		10.46	□□□□□ -0.73
HDAC6-222	ENST00000478095	CEP44	Q9C0F1	390 aa		10.46	□□□□□ -0.73
HDAC6-222	ENST00000478095	PABPC3	Q9H361	631 aa	Known RBP	10.46	□□□□□ -0.73
HDAC6-222	ENST00000478095	SEMA4A	Q9H3S1	761 aa		10.46	□□□□□ -0.73
HDAC6-222	ENST00000478095	SP110	Q9HB58	689 aa		10.46	□□□□□ -0.73
HDAC6-222	ENST00000478095	PDF	Q9HBH1	243 aa		10.46	□□□□□ -0.73
HDAC6-222	ENST00000478095	ITM2C	Q9NQX7	267 aa		10.46	□□□□□ -0.73
HDAC6-222	ENST00000478095	UBA2	Q9UBT2	640 aa	Predicted RBP	10.46	□□□□□ -0.73
HDAC6-222	ENST00000478095	SARDH	Q9UL12	918 aa		10.46	□□□□□ -0.73
HDAC6-222	ENST00000478095	ADGRG1	Q9Y653	693 aa		10.46	□□□□□ -0.73
HDAC6-222	ENST00000478095	VPS13A	Q96RL7	3174 aa		10.46	□□□□□ -0.74
HDAC6-222	ENST00000478095	MYO15A	Q9UKN7	3530 aa		10.45	□□□□□ -0.74
HDAC6-222	ENST00000478095	GPR179	Q6PRD1	2367 aa		10.45	□□□□□ -0.74
HDAC6-222	ENST00000478095	ATXN2	Q99700	1313 aa	Known RBP	10.45	□□□□□ -0.74
HDAC6-222	ENST00000478095	GRID2IP	A4D2P6	1211 aa		10.45	□□□□□ -0.74
HDAC6-222	ENST00000478095	ZSCAN5C	A6NGD5	496 aa	Predicted RBP	10.45	□□□□□ -0.74
HDAC6-222	ENST00000478095	C3orf70	A6NLC5	250 aa	Predicted RBP	10.45	□□□□□ -0.74
HDAC6-222	ENST00000478095	MCF2L	O15068	1137 aa		10.45	□□□□□ -0.74
HDAC6-222	ENST00000478095	PRAMEF11	O60813	436 aa		10.45	□□□□□ -0.74

Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms