RNA–Protein interactions for RNA: ENST00000477612.5

COL9A3-211, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 635 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-211ENST00000477612 ARHGAP20Q9P2F6 1191 aa22.21■■□□□ 1.15
COL9A3-211ENST00000477612 DNAI1Q9UI46 699 aa22.21■■□□□ 1.15
COL9A3-211ENST00000477612 CAPN11Q9UMQ6 739 aa22.21■■□□□ 1.15
COL9A3-211ENST00000477612 ANKRD6Q9Y2G4 727 aa22.21■■□□□ 1.15
COL9A3-211ENST00000477612 VILLO15195 856 aa22.2■■□□□ 1.14
COL9A3-211ENST00000477612 PRNPP04156 253 aa22.2■■□□□ 1.14
COL9A3-211ENST00000477612 KCNA4P22459 653 aa22.2■■□□□ 1.14
COL9A3-211ENST00000477612 HTR7P34969 479 aa22.2■■□□□ 1.14
COL9A3-211ENST00000477612 ZBED6P86452 979 aa22.2■■□□□ 1.14
COL9A3-211ENST00000477612 KIF19Q2TAC6 998 aa22.2■■□□□ 1.14
COL9A3-211ENST00000477612 DPY19L3Q6ZPD9 716 aa22.2■■□□□ 1.14
COL9A3-211ENST00000477612 RTL3Q8N8U3 475 aaKnown RBP22.2■■□□□ 1.14
COL9A3-211ENST00000477612 CHST14Q8NCH0 376 aa22.2■■□□□ 1.14
COL9A3-211ENST00000477612 PCDHGB2Q9Y5G2 931 aa22.2■■□□□ 1.14
COL9A3-211ENST00000477612 TBC1D3DA0A087WVF3 549 aa22.19■■□□□ 1.14
COL9A3-211ENST00000477612 TBC1D3IA0A087WXS9 549 aa22.19■■□□□ 1.14
COL9A3-211ENST00000477612 TBC1D3EA0A087X179 549 aa22.19■■□□□ 1.14
COL9A3-211ENST00000477612 TBC1D3KA0A087X1G2 549 aa22.19■■□□□ 1.14
COL9A3-211ENST00000477612 TBC1D3FA6NER0 549 aaPredicted RBP22.19■■□□□ 1.14
COL9A3-211ENST00000477612 EIF3CLB5ME19 914 aaKnown RBP22.19■■□□□ 1.14
COL9A3-211ENST00000477612 TBC1D3LB9A6J9 549 aa22.19■■□□□ 1.14
COL9A3-211ENST00000477612 PLK4O00444 970 aa22.19■■□□□ 1.14
COL9A3-211ENST00000477612 BNIP3LO60238 219 aa22.19■■□□□ 1.14
COL9A3-211ENST00000477612 RAMP2O60895 175 aa22.19■■□□□ 1.14
COL9A3-211ENST00000477612 TBC1D3HP0C7X1 549 aa22.19■■□□□ 1.14
COL9A3-211ENST00000477612 EPHB2P29323 1055 aa22.19■■□□□ 1.14
COL9A3-211ENST00000477612 NUDT1P36639 197 aa22.19■■□□□ 1.14
COL9A3-211ENST00000477612 GEMIN4P57678 1058 aaKnown RBP22.19■■□□□ 1.14
COL9A3-211ENST00000477612 YBEYP58557 167 aaPredicted RBP22.19■■□□□ 1.14
COL9A3-211ENST00000477612 TAS2R38P59533 333 aa22.19■■□□□ 1.14
COL9A3-211ENST00000477612 ZNF252P-AS1Q0IIN9 211 aa22.19■■□□□ 1.14
COL9A3-211ENST00000477612 CCDC15Q0P6D6 951 aa22.19■■□□□ 1.14
COL9A3-211ENST00000477612 POLD3Q15054 466 aaPredicted RBP22.19■■□□□ 1.14
COL9A3-211ENST00000477612 CARD16Q5EG05 197 aa22.19■■□□□ 1.14
COL9A3-211ENST00000477612 PIP5KL1Q5T9C9 394 aa22.19■■□□□ 1.14
COL9A3-211ENST00000477612 TBC1D3GQ6DHY5 549 aa22.19■■□□□ 1.14
COL9A3-211ENST00000477612 TBC1D3CQ6IPX1 549 aa22.19■■□□□ 1.14
COL9A3-211ENST00000477612 TRIM69Q86WT6 500 aa22.19■■□□□ 1.14
COL9A3-211ENST00000477612 DNAAF5Q86Y56 855 aa22.19■■□□□ 1.14
COL9A3-211ENST00000477612 TBC1D3Q8IZP1 549 aaPredicted RBP22.19■■□□□ 1.14
COL9A3-211ENST00000477612 ARFGAP1Q8N6T3 406 aa22.19■■□□□ 1.14
COL9A3-211ENST00000477612 TRIM11Q96F44 468 aa22.19■■□□□ 1.14
COL9A3-211ENST00000477612 EIF3CQ99613 913 aaKnown RBP22.19■■□□□ 1.14
COL9A3-211ENST00000477612 NOL6Q9H6R4 1146 aaKnown RBP22.19■■□□□ 1.14
COL9A3-211ENST00000477612 IL21RQ9HBE5 538 aa22.19■■□□□ 1.14
COL9A3-211ENST00000477612 TM7SF3Q9NS93 570 aa22.19■■□□□ 1.14
COL9A3-211ENST00000477612 CNOT8Q9UFF9 292 aaKnown RBP22.19■■□□□ 1.14
COL9A3-211ENST00000477612 IL36AQ9UHA7 158 aa22.19■■□□□ 1.14
COL9A3-211ENST00000477612 SNX11Q9Y5W9 270 aa22.19■■□□□ 1.14
COL9A3-211ENST00000477612 WASF2Q9Y6W5 498 aa22.19■■□□□ 1.14
COL9A3-211ENST00000477612 TRPM6Q9BX84 2022 aa22.19■■□□□ 1.14
COL9A3-211ENST00000477612 A0A1W2PR77 199 aa22.18■■□□□ 1.14
COL9A3-211ENST00000477612 ATMINO43313 823 aaPredicted RBP22.18■■□□□ 1.14
COL9A3-211ENST00000477612 KDELR3O43731 214 aa22.18■■□□□ 1.14
COL9A3-211ENST00000477612 MYBL1P10243 752 aa22.18■■□□□ 1.14
COL9A3-211ENST00000477612 PSMA2P25787 234 aa22.18■■□□□ 1.14
COL9A3-211ENST00000477612 CTSKP43235 329 aa22.18■■□□□ 1.14
COL9A3-211ENST00000477612 RECQLP46063 649 aaPredicted RBP22.18■■□□□ 1.14
COL9A3-211ENST00000477612 PPP2CBP62714 309 aa22.18■■□□□ 1.14
COL9A3-211ENST00000477612 PPP2CAP67775 309 aa22.18■■□□□ 1.14
COL9A3-211ENST00000477612 ZNF423Q2M1K9 1284 aa22.18■■□□□ 1.14
COL9A3-211ENST00000477612 NEK5Q6P3R8 708 aa22.18■■□□□ 1.14
COL9A3-211ENST00000477612 ARRDC3Q96B67 414 aa22.18■■□□□ 1.14
COL9A3-211ENST00000477612 SLC6A18Q96N87 628 aa22.18■■□□□ 1.14
COL9A3-211ENST00000477612 EPAS1Q99814 870 aa22.18■■□□□ 1.14
COL9A3-211ENST00000477612 HDAC8Q9BY41 377 aa22.18■■□□□ 1.14
COL9A3-211ENST00000477612 TNKS2Q9H2K2 1166 aa22.18■■□□□ 1.14
COL9A3-211ENST00000477612 CATSPERBQ9H7T0 1116 aa22.18■■□□□ 1.14
COL9A3-211ENST00000477612 PREBQ9HCU5 417 aa22.18■■□□□ 1.14
COL9A3-211ENST00000477612 IFNKQ9P0W0 207 aa22.18■■□□□ 1.14
COL9A3-211ENST00000477612 HPCAL4Q9UM19 191 aa22.18■■□□□ 1.14
COL9A3-211ENST00000477612 WASF3Q9UPY6 502 aa22.18■■□□□ 1.14
COL9A3-211ENST00000477612 SCINQ9Y6U3 715 aa22.18■■□□□ 1.14
COL9A3-211ENST00000477612 ZSCAN5CA6NGD5 496 aaPredicted RBP22.17■■□□□ 1.14
COL9A3-211ENST00000477612 RNF103O00237 685 aa22.17■■□□□ 1.14
COL9A3-211ENST00000477612 SH3BP5O60239 455 aa22.17■■□□□ 1.14
COL9A3-211ENST00000477612 CD38P28907 300 aa22.17■■□□□ 1.14
COL9A3-211ENST00000477612 ARSIQ5FYB1 569 aa22.17■■□□□ 1.14
COL9A3-211ENST00000477612 KCNT1Q5JUK3 1230 aa22.17■■□□□ 1.14
COL9A3-211ENST00000477612 PRPF39Q86UA1 669 aaKnown RBP22.17■■□□□ 1.14
COL9A3-211ENST00000477612 UMODL1-AS1Q8N2C9 162 aa22.17■■□□□ 1.14
COL9A3-211ENST00000477612 HEPHQ9BQS7 1158 aa22.17■■□□□ 1.14
COL9A3-211ENST00000477612 MRPL47Q9HD33 250 aaKnown RBP22.17■■□□□ 1.14
COL9A3-211ENST00000477612 ANGPTL2Q9UKU9 493 aa22.17■■□□□ 1.14
COL9A3-211ENST00000477612 DMTF1Q9Y222 760 aa22.17■■□□□ 1.14
COL9A3-211ENST00000477612 FNDC3AQ9Y2H6 1198 aaKnown RBP22.17■■□□□ 1.14
COL9A3-211ENST00000477612 FCF1Q9Y324 198 aaKnown RBP22.17■■□□□ 1.14
COL9A3-211ENST00000477612 ACTL7AQ9Y615 435 aa22.17■■□□□ 1.14
COL9A3-211ENST00000477612 KPNA3O00505 521 aaPredicted RBP22.16■■□□□ 1.14
COL9A3-211ENST00000477612 FGF10O15520 208 aaPredicted RBP22.16■■□□□ 1.14
COL9A3-211ENST00000477612 CREB3O43889 395 aa22.16■■□□□ 1.14
COL9A3-211ENST00000477612 DFNA5O60443 496 aa22.16■■□□□ 1.14
COL9A3-211ENST00000477612 CBFA2T3O75081 653 aa22.16■■□□□ 1.14
COL9A3-211ENST00000477612 LEFTY1O75610 366 aa22.16■■□□□ 1.14
COL9A3-211ENST00000477612 WNT1P04628 370 aa22.16■■□□□ 1.14
COL9A3-211ENST00000477612 GYPCP04921 128 aa22.16■■□□□ 1.14
COL9A3-211ENST00000477612 SERPING1P05155 500 aa22.16■■□□□ 1.14
COL9A3-211ENST00000477612 ACAP1Q15027 740 aa22.16■■□□□ 1.14
COL9A3-211ENST00000477612 POM121L1PQ3SYA9 428 aa22.16■■□□□ 1.14
COL9A3-211ENST00000477612 INO80DQ53TQ3 878 aaPredicted RBP22.16■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms