RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 PLXNA2O75051 1894 aa12.25□□□□□ -0.45
SQSTM1-206ENST00000466342 KCNU1A8MYU2 1149 aa12.24□□□□□ -0.45
SQSTM1-206ENST00000466342 ENDOD1O94919 500 aa12.24□□□□□ -0.45
SQSTM1-206ENST00000466342 MOCS2O96007 188 aaPredicted RBP12.24□□□□□ -0.45
SQSTM1-206ENST00000466342 ACADMP11310 421 aa12.24□□□□□ -0.45
SQSTM1-206ENST00000466342 CTSKP43235 329 aa12.24□□□□□ -0.45
SQSTM1-206ENST00000466342 CXCR3P49682 368 aa12.24□□□□□ -0.45
SQSTM1-206ENST00000466342 ZNF143P52747 638 aaPredicted RBP12.24□□□□□ -0.45
SQSTM1-206ENST00000466342 GALCP54803 685 aa12.24□□□□□ -0.45
SQSTM1-206ENST00000466342 IL9RQ01113 521 aa12.24□□□□□ -0.45
SQSTM1-206ENST00000466342 CDO1Q16878 200 aa12.24□□□□□ -0.45
SQSTM1-206ENST00000466342 C15orf59Q2T9L4 293 aaPredicted RBP12.24□□□□□ -0.45
SQSTM1-206ENST00000466342 FAM133BQ5BKY9 247 aaKnown RBP12.24□□□□□ -0.45
SQSTM1-206ENST00000466342 BRMS1LQ5PSV4 323 aa12.24□□□□□ -0.45
SQSTM1-206ENST00000466342 PIK3R6Q5UE93 754 aa12.24□□□□□ -0.45
SQSTM1-206ENST00000466342 NADSYN1Q6IA69 706 aa12.24□□□□□ -0.45
SQSTM1-206ENST00000466342 STRADAQ7RTN6 431 aa12.24□□□□□ -0.45
SQSTM1-206ENST00000466342 KIAA0907Q7Z7F0 614 aaPredicted RBP12.24□□□□□ -0.45
SQSTM1-206ENST00000466342 DDX51Q8N8A6 666 aaKnown RBP eCLIP12.24□□□□□ -0.45
SQSTM1-206ENST00000466342 ATP6V0D2Q8N8Y2 350 aa12.24□□□□□ -0.45
SQSTM1-206ENST00000466342 WFIKKN2Q8TEU8 576 aa12.24□□□□□ -0.45
SQSTM1-206ENST00000466342 SNRNP27Q8WVK2 155 aaKnown RBP12.24□□□□□ -0.45
SQSTM1-206ENST00000466342 SNX19Q92543 992 aa12.24□□□□□ -0.45
SQSTM1-206ENST00000466342 CENPIQ92674 756 aaPredicted RBP12.24□□□□□ -0.45
SQSTM1-206ENST00000466342 PRCCQ92733 491 aaPredicted RBP12.24□□□□□ -0.45
SQSTM1-206ENST00000466342 RNF34Q969K3 372 aa12.24□□□□□ -0.45
SQSTM1-206ENST00000466342 NAF1Q96HR8 494 aaKnown RBP12.24□□□□□ -0.45
SQSTM1-206ENST00000466342 DDX50Q9BQ39 737 aaKnown RBP12.24□□□□□ -0.45
SQSTM1-206ENST00000466342 CIPCQ9C0C6 399 aa12.24□□□□□ -0.45
SQSTM1-206ENST00000466342 SPTLC3Q9NUV7 552 aa12.24□□□□□ -0.45
SQSTM1-206ENST00000466342 SLC12A6Q9UHW9 1150 aa12.24□□□□□ -0.45
SQSTM1-206ENST00000466342 XPO7Q9UIA9 1087 aaKnown RBP12.24□□□□□ -0.45
SQSTM1-206ENST00000466342 PAXBP1Q9Y5B6 917 aa12.24□□□□□ -0.45
SQSTM1-206ENST00000466342 A0A1B0GTQ1 180 aa12.23□□□□□ -0.45
SQSTM1-206ENST00000466342 TMEM191CA6NGB0 347 aa12.23□□□□□ -0.45
SQSTM1-206ENST00000466342 CBX4O00257 560 aa12.23□□□□□ -0.45
SQSTM1-206ENST00000466342 CCP110O43303 1012 aa12.23□□□□□ -0.45
SQSTM1-206ENST00000466342 SYNCRIPO60506 623 aaKnown RBP12.23□□□□□ -0.45
SQSTM1-206ENST00000466342 CYP1A2P05177 515 aa12.23□□□□□ -0.45
SQSTM1-206ENST00000466342 H2AFZP0C0S5 128 aa12.23□□□□□ -0.45
SQSTM1-206ENST00000466342 DESP17661 470 aa12.23□□□□□ -0.45
SQSTM1-206ENST00000466342 GLDCP23378 1020 aa12.23□□□□□ -0.45
SQSTM1-206ENST00000466342 HLA-FP30511 346 aa12.23□□□□□ -0.45
SQSTM1-206ENST00000466342 SLC6A4P31645 630 aa12.23□□□□□ -0.45
SQSTM1-206ENST00000466342 ACADVLP49748 655 aa12.23□□□□□ -0.45
SQSTM1-206ENST00000466342 PCBP4P57723 403 aaKnown RBP12.23□□□□□ -0.45
SQSTM1-206ENST00000466342 OGDHQ02218 1023 aa12.23□□□□□ -0.45
SQSTM1-206ENST00000466342 ZNF234Q14588 700 aa12.23□□□□□ -0.45
SQSTM1-206ENST00000466342 KCNT1Q5JUK3 1230 aa12.23□□□□□ -0.45
SQSTM1-206ENST00000466342 TMEM215Q68D42 235 aa12.23□□□□□ -0.45
SQSTM1-206ENST00000466342 H2AFVQ71UI9 128 aa12.23□□□□□ -0.45
SQSTM1-206ENST00000466342 GATAD2AQ86YP4 633 aa12.23□□□□□ -0.45
SQSTM1-206ENST00000466342 TMTC1Q8IUR5 882 aa12.23□□□□□ -0.45
SQSTM1-206ENST00000466342 CCDC170Q8IYT3 715 aa12.23□□□□□ -0.45
SQSTM1-206ENST00000466342 FNIP1Q8TF40 1166 aa12.23□□□□□ -0.45
SQSTM1-206ENST00000466342 FAM172AQ8WUF8 416 aa12.23□□□□□ -0.45
SQSTM1-206ENST00000466342 TSC1Q92574 1164 aa12.23□□□□□ -0.45
SQSTM1-206ENST00000466342 CNPY3Q9BT09 278 aa12.23□□□□□ -0.45
SQSTM1-206ENST00000466342 TKTL2Q9H0I9 626 aa12.23□□□□□ -0.45
SQSTM1-206ENST00000466342 WDCPQ9H6R7 721 aa12.23□□□□□ -0.45
SQSTM1-206ENST00000466342 ARHGEF38Q9NXL2 777 aa12.23□□□□□ -0.45
SQSTM1-206ENST00000466342 PLA2G4CQ9UP65 541 aa12.23□□□□□ -0.45
SQSTM1-206ENST00000466342 ARID1BQ8NFD5 2236 aaPredicted RBP12.23□□□□□ -0.45
SQSTM1-206ENST00000466342 GOLGA6L7A0A1B0GV03 622 aa12.22□□□□□ -0.45
SQSTM1-206ENST00000466342 PAGE1O75459 146 aa12.22□□□□□ -0.45
SQSTM1-206ENST00000466342 ATP5BP06576 529 aaKnown RBP12.22□□□□□ -0.45
SQSTM1-206ENST00000466342 TMEM253P0C7T8 217 aa12.22□□□□□ -0.45
SQSTM1-206ENST00000466342 CYLC1P35663 651 aaPredicted RBP12.22□□□□□ -0.45
SQSTM1-206ENST00000466342 HDAC4P56524 1084 aa12.22□□□□□ -0.45
SQSTM1-206ENST00000466342 GSDMDP57764 484 aa12.22□□□□□ -0.45
SQSTM1-206ENST00000466342 VAC14Q08AM6 782 aa12.22□□□□□ -0.45
SQSTM1-206ENST00000466342 ILKQ13418 452 aa12.22□□□□□ -0.45
SQSTM1-206ENST00000466342 RAB6CQ53S08 254 aa12.22□□□□□ -0.45
SQSTM1-206ENST00000466342 MS4A13Q5J8X5 152 aa12.22□□□□□ -0.45
SQSTM1-206ENST00000466342 RFWD3Q6PCD5 774 aa12.22□□□□□ -0.45
SQSTM1-206ENST00000466342 SERPINA13PQ6UXR4 307 aa12.22□□□□□ -0.45
SQSTM1-206ENST00000466342 CHST9Q7L1S5 443 aa12.22□□□□□ -0.45
SQSTM1-206ENST00000466342 FAM124AQ86V42 546 aa12.22□□□□□ -0.45
SQSTM1-206ENST00000466342 CHSY1Q86X52 802 aa12.22□□□□□ -0.45
SQSTM1-206ENST00000466342 FAM131BQ86XD5 332 aa12.22□□□□□ -0.45
SQSTM1-206ENST00000466342 AHI1Q8N157 1196 aa12.22□□□□□ -0.45
SQSTM1-206ENST00000466342 FIBINQ8TAL6 211 aa12.22□□□□□ -0.45
SQSTM1-206ENST00000466342 CTNNBL1Q8WYA6 563 aaPredicted RBP12.22□□□□□ -0.45
SQSTM1-206ENST00000466342 ARHGEF26Q96DR7 871 aa12.22□□□□□ -0.45
SQSTM1-206ENST00000466342 PRICKLE1Q96MT3 831 aaPredicted RBP12.22□□□□□ -0.45
SQSTM1-206ENST00000466342 ZNF578Q96N58 590 aaPredicted RBP12.22□□□□□ -0.45
SQSTM1-206ENST00000466342 NUP85Q9BW27 656 aa12.22□□□□□ -0.45
SQSTM1-206ENST00000466342 PACSIN1Q9BY11 444 aa12.22□□□□□ -0.45
SQSTM1-206ENST00000466342 FAM117AQ9C073 453 aa12.22□□□□□ -0.45
SQSTM1-206ENST00000466342 RAB6CQ9H0N0 254 aa12.22□□□□□ -0.45
SQSTM1-206ENST00000466342 C6orf106Q9H6K1 298 aaPredicted RBP12.22□□□□□ -0.45
SQSTM1-206ENST00000466342 ABCB8Q9NUT2 735 aa12.22□□□□□ -0.45
SQSTM1-206ENST00000466342 GGA2Q9UJY4 613 aa12.22□□□□□ -0.45
SQSTM1-206ENST00000466342 CLCA2Q9UQC9 943 aa12.22□□□□□ -0.45
SQSTM1-206ENST00000466342 ZBTB32Q9Y2Y4 487 aaPredicted RBP12.22□□□□□ -0.45
SQSTM1-206ENST00000466342 TYW5A2RUC4 315 aaKnown RBP12.21□□□□□ -0.45
SQSTM1-206ENST00000466342 SOWAHDA6NJG2 315 aa12.21□□□□□ -0.45
SQSTM1-206ENST00000466342 F5H5T6 163 aa12.21□□□□□ -0.45
SQSTM1-206ENST00000466342 I6L893 689 aaPredicted RBP12.21□□□□□ -0.45
SQSTM1-206ENST00000466342 TBL1XO60907 577 aa12.21□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms