RNA–Protein interactions for RNA: ENST00000465238.5

COL7A1-205, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-205ENST00000465238 ASLP04424 464 aa18.14■□□□□ 0.49
COL7A1-205ENST00000465238 OR1E1P30953 314 aa18.14■□□□□ 0.49
COL7A1-205ENST00000465238 AFF3P51826 1226 aaKnown RBP18.14■□□□□ 0.49
COL7A1-205ENST00000465238 ST8SIA6P61647 398 aa18.14■□□□□ 0.49
COL7A1-205ENST00000465238 GSE1Q14687 1217 aa18.14■□□□□ 0.49
COL7A1-205ENST00000465238 TCEAL1Q15170 157 aa18.14■□□□□ 0.49
COL7A1-205ENST00000465238 TTC31Q49AM3 519 aaPredicted RBP18.14■□□□□ 0.49
COL7A1-205ENST00000465238 TXLNBQ8N3L3 684 aa18.14■□□□□ 0.49
COL7A1-205ENST00000465238 TTC17Q96AE7 1141 aa18.14■□□□□ 0.49
COL7A1-205ENST00000465238 LMLNQ96KR4 655 aa18.14■□□□□ 0.49
COL7A1-205ENST00000465238 BTBD1Q9H0C5 482 aa18.14■□□□□ 0.49
COL7A1-205ENST00000465238 C6orf106Q9H6K1 298 aaPredicted RBP18.14■□□□□ 0.49
COL7A1-205ENST00000465238 RETREG1Q9H6L5 497 aa18.14■□□□□ 0.49
COL7A1-205ENST00000465238 GAREM1Q9H706 876 aa18.14■□□□□ 0.49
COL7A1-205ENST00000465238 ZWILCHQ9H900 591 aa18.14■□□□□ 0.49
COL7A1-205ENST00000465238 TBC1D30Q9Y2I9 924 aa18.14■□□□□ 0.49
COL7A1-205ENST00000465238 ZBTB32Q9Y2Y4 487 aaPredicted RBP18.14■□□□□ 0.49
COL7A1-205ENST00000465238 DMXL2Q8TDJ6 3036 aa18.14■□□□□ 0.49
COL7A1-205ENST00000465238 WDFY3Q8IZQ1 3526 aa18.13■□□□□ 0.49
COL7A1-205ENST00000465238 NRDCO43847 1150 aa18.13■□□□□ 0.49
COL7A1-205ENST00000465238 SEMA4FO95754 770 aa18.13■□□□□ 0.49
COL7A1-205ENST00000465238 RHOCP08134 193 aa18.13■□□□□ 0.49
COL7A1-205ENST00000465238 RHOQP17081 205 aa18.13■□□□□ 0.49
COL7A1-205ENST00000465238 EPHB2P29323 1055 aa18.13■□□□□ 0.49
COL7A1-205ENST00000465238 CSKP41240 450 aa18.13■□□□□ 0.49
COL7A1-205ENST00000465238 PITRM1Q5JRX3 1037 aa18.13■□□□□ 0.49
COL7A1-205ENST00000465238 C6orf118Q5T5N4 469 aa18.13■□□□□ 0.49
COL7A1-205ENST00000465238 MANEALQ5VSG8 457 aa18.13■□□□□ 0.49
COL7A1-205ENST00000465238 RNF219Q5W0B1 726 aaPredicted RBP18.13■□□□□ 0.49
COL7A1-205ENST00000465238 ZNF776Q68DI1 518 aaPredicted RBP18.13■□□□□ 0.49
COL7A1-205ENST00000465238 RAB44Q7Z6P3 723 aaPredicted RBP18.13■□□□□ 0.49
COL7A1-205ENST00000465238 TFAP2DQ7Z6R9 452 aa18.13■□□□□ 0.49
COL7A1-205ENST00000465238 KIAA1328Q86T90 577 aa18.13■□□□□ 0.49
COL7A1-205ENST00000465238 SETD3Q86TU7 594 aaPredicted RBP18.13■□□□□ 0.49
COL7A1-205ENST00000465238 CHCHD4Q8N4Q1 142 aa18.13■□□□□ 0.49
COL7A1-205ENST00000465238 KDM1BQ8NB78 822 aa18.13■□□□□ 0.49
COL7A1-205ENST00000465238 ACRBPQ8NEB7 543 aa18.13■□□□□ 0.49
COL7A1-205ENST00000465238 SNX19Q92543 992 aa18.13■□□□□ 0.49
COL7A1-205ENST00000465238 RSPH9Q9H1X1 276 aaPredicted RBP18.13■□□□□ 0.49
COL7A1-205ENST00000465238 SGK2Q9HBY8 427 aa18.13■□□□□ 0.49
COL7A1-205ENST00000465238 TM7SF3Q9NS93 570 aa18.13■□□□□ 0.49
COL7A1-205ENST00000465238 SCML1Q9UN30 329 aa18.13■□□□□ 0.49
COL7A1-205ENST00000465238 PKD1L2Q7Z442 2459 aa18.12■□□□□ 0.49
COL7A1-205ENST00000465238 A0A0A6YYK5 440 aaPredicted RBP18.12■□□□□ 0.49
COL7A1-205ENST00000465238 TCF4P15884 667 aa18.12■□□□□ 0.49
COL7A1-205ENST00000465238 IL1R2P27930 398 aa18.12■□□□□ 0.49
COL7A1-205ENST00000465238 MAN1A1P33908 653 aa18.12■□□□□ 0.49
COL7A1-205ENST00000465238 HTR7P34969 479 aa18.12■□□□□ 0.49
COL7A1-205ENST00000465238 VAV2P52735 878 aa18.12■□□□□ 0.49
COL7A1-205ENST00000465238 PLK1P53350 603 aa18.12■□□□□ 0.49
COL7A1-205ENST00000465238 TPI1P60174 286 aa18.12■□□□□ 0.49
COL7A1-205ENST00000465238 BNC1Q01954 994 aa18.12■□□□□ 0.49
COL7A1-205ENST00000465238 TEAD4Q15561 434 aa18.12■□□□□ 0.49
COL7A1-205ENST00000465238 CA9Q16790 459 aa18.12■□□□□ 0.49
COL7A1-205ENST00000465238 HLA-BQ31612 363 aa18.12■□□□□ 0.49
COL7A1-205ENST00000465238 HNRNPA1L2Q32P51 320 aaKnown RBP18.12■□□□□ 0.49
COL7A1-205ENST00000465238 PPP6R3Q5H9R7 873 aaPredicted RBP18.12■□□□□ 0.49
COL7A1-205ENST00000465238 KCNT1Q5JUK3 1230 aa18.12■□□□□ 0.49
COL7A1-205ENST00000465238 CXorf57Q6NSI4 855 aaKnown RBP18.12■□□□□ 0.49
COL7A1-205ENST00000465238 GLRX5Q86SX6 157 aa18.12■□□□□ 0.49
COL7A1-205ENST00000465238 LRRC8AQ8IWT6 810 aa18.12■□□□□ 0.49
COL7A1-205ENST00000465238 APCDD1Q8J025 514 aa18.12■□□□□ 0.49
COL7A1-205ENST00000465238 HSPH1Q92598 858 aa18.12■□□□□ 0.49
COL7A1-205ENST00000465238 MYO19Q96H55 970 aa18.12■□□□□ 0.49
COL7A1-205ENST00000465238 MUC3BQ9H195 1237 aa18.12■□□□□ 0.49
COL7A1-205ENST00000465238 CATSPERBQ9H7T0 1116 aa18.12■□□□□ 0.49
COL7A1-205ENST00000465238 IL21RQ9HBE5 538 aa18.12■□□□□ 0.49
COL7A1-205ENST00000465238 PCOLCE2Q9UKZ9 415 aa18.12■□□□□ 0.49
COL7A1-205ENST00000465238 INTS6Q9UL03 887 aaKnown RBP18.12■□□□□ 0.49
COL7A1-205ENST00000465238 TFR2Q9UP52 801 aa18.12■□□□□ 0.49
COL7A1-205ENST00000465238 NCKAP1Q9Y2A7 1128 aa18.12■□□□□ 0.49
COL7A1-205ENST00000465238 REXO2Q9Y3B8 237 aaKnown RBP18.12■□□□□ 0.49
COL7A1-205ENST00000465238 PCDHGB2Q9Y5G2 931 aa18.12■□□□□ 0.49
COL7A1-205ENST00000465238 ANKRD11Q6UB99 2663 aaPredicted RBP18.12■□□□□ 0.49
COL7A1-205ENST00000465238 SPEGQ15772 3267 aa18.11■□□□□ 0.49
COL7A1-205ENST00000465238 A0A1B0GVT2 93 aa18.11■□□□□ 0.49
COL7A1-205ENST00000465238 EEF2KO00418 725 aaKnown RBP18.11■□□□□ 0.49
COL7A1-205ENST00000465238 DAPK3O43293 454 aa18.11■□□□□ 0.49
COL7A1-205ENST00000465238 RNASEH1O60930 286 aaKnown RBP18.11■□□□□ 0.49
COL7A1-205ENST00000465238 CBFA2T3O75081 653 aa18.11■□□□□ 0.49
COL7A1-205ENST00000465238 FTH1P19P0C7X4 201 aa18.11■□□□□ 0.49
COL7A1-205ENST00000465238 RARAP10276 462 aa18.11■□□□□ 0.49
COL7A1-205ENST00000465238 MZF1P28698 734 aaPredicted RBP18.11■□□□□ 0.49
COL7A1-205ENST00000465238 CSNK1EP49674 416 aaKnown RBP18.11■□□□□ 0.49
COL7A1-205ENST00000465238 ZNF135P52742 658 aaPredicted RBP18.11■□□□□ 0.49
COL7A1-205ENST00000465238 HADHBP55084 474 aaKnown RBP18.11■□□□□ 0.49
COL7A1-205ENST00000465238 SLC25A11Q02978 314 aaKnown RBP18.11■□□□□ 0.49
COL7A1-205ENST00000465238 SFSWAPQ12872 951 aaKnown RBP18.11■□□□□ 0.49
COL7A1-205ENST00000465238 SMTNL2Q2TAL5 461 aa18.11■□□□□ 0.49
COL7A1-205ENST00000465238 ARTNQ5T4W7 220 aa18.11■□□□□ 0.49
COL7A1-205ENST00000465238 CYP4V2Q6ZWL3 525 aaPredicted RBP18.11■□□□□ 0.49
COL7A1-205ENST00000465238 USP30Q70CQ3 517 aa18.11■□□□□ 0.49
COL7A1-205ENST00000465238 SETD7Q8WTS6 366 aaKnown RBP18.11■□□□□ 0.49
COL7A1-205ENST00000465238 TEKT4Q8WW24 435 aa18.11■□□□□ 0.49
COL7A1-205ENST00000465238 ADAMTS14Q8WXS8 1223 aa18.11■□□□□ 0.49
COL7A1-205ENST00000465238 ZCCHC14Q8WYQ9 949 aaKnown RBP18.11■□□□□ 0.49
COL7A1-205ENST00000465238 BIRC7Q96CA5 298 aa18.11■□□□□ 0.49
COL7A1-205ENST00000465238 KCTD15Q96SI1 283 aaPredicted RBP18.11■□□□□ 0.49
COL7A1-205ENST00000465238 FEM1AQ9BSK4 669 aa18.11■□□□□ 0.49
COL7A1-205ENST00000465238 STAU2Q9NUL3 570 aaKnown RBP eCLIP18.11■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 50.9 ms