RNA–Protein interactions for RNA: ENST00000463007.5

HDAC4-208, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 3,158 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-208ENST00000463007 SH2D4BQ5SQS7 431 aa12.64□□□□□ -0.39
HDAC4-208ENST00000463007 SEL1L3Q68CR1 1132 aa12.64□□□□□ -0.39
HDAC4-208ENST00000463007 SLC27A1Q6PCB7 646 aa12.64□□□□□ -0.39
HDAC4-208ENST00000463007 FAM110BQ8TC76 370 aa12.64□□□□□ -0.39
HDAC4-208ENST00000463007 KCTD4Q8WVF5 259 aa12.64□□□□□ -0.39
HDAC4-208ENST00000463007 RPL10LQ96L21 214 aaKnown RBP12.64□□□□□ -0.39
HDAC4-208ENST00000463007 SERPINI1Q99574 410 aa12.64□□□□□ -0.39
HDAC4-208ENST00000463007 TINF2Q9BSI4 451 aa12.64□□□□□ -0.39
HDAC4-208ENST00000463007 KLK14Q9P0G3 267 aa12.64□□□□□ -0.39
HDAC4-208ENST00000463007 DNAJB4Q9UDY4 337 aa12.64□□□□□ -0.39
HDAC4-208ENST00000463007 V9GYQ6 96 aa12.64□□□□□ -0.39
HDAC4-208ENST00000463007 TRIP12Q14669 1992 aaPredicted RBP12.64□□□□□ -0.39
HDAC4-208ENST00000463007 SHROOM3Q8TF72 1996 aa12.64□□□□□ -0.39
HDAC4-208ENST00000463007 FAM149AA5PLN7 773 aa12.63□□□□□ -0.39
HDAC4-208ENST00000463007 TMX2-CTNND1H3BSU7 103 aa12.63□□□□□ -0.39
HDAC4-208ENST00000463007 MDM4O15151 490 aa12.63□□□□□ -0.39
HDAC4-208ENST00000463007 TRIM13O60858 407 aa12.63□□□□□ -0.39
HDAC4-208ENST00000463007 TMCC1O94876 653 aa12.63□□□□□ -0.39
HDAC4-208ENST00000463007 FBXO21O94952 628 aa12.63□□□□□ -0.39
HDAC4-208ENST00000463007 CLIC3O95833 236 aa12.63□□□□□ -0.39
HDAC4-208ENST00000463007 HOXC8P31273 242 aa12.63□□□□□ -0.39
HDAC4-208ENST00000463007 SLC5A2P31639 672 aa12.63□□□□□ -0.39
HDAC4-208ENST00000463007 GP5P40197 560 aa12.63□□□□□ -0.39
HDAC4-208ENST00000463007 GARSP41250 739 aaKnown RBP12.63□□□□□ -0.39
HDAC4-208ENST00000463007 USP10Q14694 798 aaKnown RBP12.63□□□□□ -0.39
HDAC4-208ENST00000463007 DGKDQ16760 1214 aa12.63□□□□□ -0.39
HDAC4-208ENST00000463007 LRRC8BQ6P9F7 803 aa12.63□□□□□ -0.39
HDAC4-208ENST00000463007 FERMT1Q9BQL6 677 aa12.63□□□□□ -0.39
HDAC4-208ENST00000463007 TMEM79Q9BSE2 394 aa12.63□□□□□ -0.39
HDAC4-208ENST00000463007 ABHD16BQ9H3Z7 469 aa12.63□□□□□ -0.39
HDAC4-208ENST00000463007 TLK1Q9UKI8 766 aa12.63□□□□□ -0.39
HDAC4-208ENST00000463007 RUVBL2Q9Y230 463 aaKnown RBP12.63□□□□□ -0.39
HDAC4-208ENST00000463007 TLL2Q9Y6L7 1015 aa12.63□□□□□ -0.39
HDAC4-208ENST00000463007 ZNF638Q14966 1978 aaKnown RBP12.63□□□□□ -0.39
HDAC4-208ENST00000463007 SMIM31A0A1B0GVY4 71 aa12.63□□□□□ -0.39
HDAC4-208ENST00000463007 PIRO00625 290 aa12.63□□□□□ -0.39
HDAC4-208ENST00000463007 IL1BP01584 269 aa12.63□□□□□ -0.39
HDAC4-208ENST00000463007 PSMC3P17980 439 aa12.63□□□□□ -0.39
HDAC4-208ENST00000463007 TFEBP19484 476 aa12.63□□□□□ -0.39
HDAC4-208ENST00000463007 CTBP1Q13363 440 aa12.63□□□□□ -0.39
HDAC4-208ENST00000463007 PCBP1Q15365 356 aaKnown RBP eCLIP12.63□□□□□ -0.39
HDAC4-208ENST00000463007 KIZQ2M2Z5 673 aa12.63□□□□□ -0.39
HDAC4-208ENST00000463007 PABPC1LQ4VXU2 614 aaKnown RBP12.63□□□□□ -0.39
HDAC4-208ENST00000463007 ZNF618Q5T7W0 954 aa12.63□□□□□ -0.39
HDAC4-208ENST00000463007 NCBP2-AS2Q69YL0 99 aa12.63□□□□□ -0.39
HDAC4-208ENST00000463007 IQSEC1Q6DN90 963 aa12.63□□□□□ -0.39
HDAC4-208ENST00000463007 DOCK3Q8IZD9 2030 aa12.63□□□□□ -0.39
HDAC4-208ENST00000463007 URGCPQ8TCY9 931 aa12.63□□□□□ -0.39
HDAC4-208ENST00000463007 EXT2Q93063 718 aa12.63□□□□□ -0.39
HDAC4-208ENST00000463007 C18orf25Q96B23 403 aaPredicted RBP12.63□□□□□ -0.39
HDAC4-208ENST00000463007 COQ10BQ9H8M1 238 aa12.63□□□□□ -0.39
HDAC4-208ENST00000463007 SETD4Q9NVD3 440 aa12.63□□□□□ -0.39
HDAC4-208ENST00000463007 SNTG2Q9NY99 539 aa12.63□□□□□ -0.39
HDAC4-208ENST00000463007 DOLKQ9UPQ8 538 aa12.63□□□□□ -0.39
HDAC4-208ENST00000463007 PHF24Q9UPV7 400 aa12.63□□□□□ -0.39
HDAC4-208ENST00000463007 AURKCQ9UQB9 309 aa12.63□□□□□ -0.39
HDAC4-208ENST00000463007 SNX10Q9Y5X0 201 aa12.63□□□□□ -0.39
HDAC4-208ENST00000463007 A0A0A0MRY4 1105 aa12.63□□□□□ -0.39
HDAC4-208ENST00000463007 CCL15-CCL14A0A0B4J2E2 113 aa12.63□□□□□ -0.39
HDAC4-208ENST00000463007 SAC3D1A6NKF1 404 aa12.63□□□□□ -0.39
HDAC4-208ENST00000463007 HAS3O00219 553 aa12.63□□□□□ -0.39
HDAC4-208ENST00000463007 THRAP10827 490 aa12.63□□□□□ -0.39
HDAC4-208ENST00000463007 CDK4P11802 303 aa12.63□□□□□ -0.39
HDAC4-208ENST00000463007 UGT1A6P19224 532 aa12.63□□□□□ -0.39
HDAC4-208ENST00000463007 LMO2P25791 158 aa12.63□□□□□ -0.39
HDAC4-208ENST00000463007 SCNN1AP37088 669 aa12.63□□□□□ -0.39
HDAC4-208ENST00000463007 PTK2BQ14289 1009 aa12.63□□□□□ -0.39
HDAC4-208ENST00000463007 CCL15Q16663 113 aa12.63□□□□□ -0.39
HDAC4-208ENST00000463007 FAM110CQ1W6H9 321 aa12.63□□□□□ -0.39
HDAC4-208ENST00000463007 C9orf57Q5W0N0 161 aa12.63□□□□□ -0.39
HDAC4-208ENST00000463007 EPGNQ6UW88 154 aa12.63□□□□□ -0.39
HDAC4-208ENST00000463007 BNIPLQ7Z465 357 aa12.63□□□□□ -0.39
HDAC4-208ENST00000463007 UNC93AQ86WB7 457 aa12.63□□□□□ -0.39
HDAC4-208ENST00000463007 ZNF567Q8N184 647 aa12.63□□□□□ -0.39
HDAC4-208ENST00000463007 PDCD6IPQ8WUM4 868 aaKnown RBP12.63□□□□□ -0.39
HDAC4-208ENST00000463007 TMEM40Q8WWA1 233 aa12.63□□□□□ -0.39
HDAC4-208ENST00000463007 LRRC39Q96DD0 335 aa12.63□□□□□ -0.39
HDAC4-208ENST00000463007 SPATA13Q96N96 652 aa12.63□□□□□ -0.39
HDAC4-208ENST00000463007 NOL11Q9H8H0 719 aaKnown RBP12.63□□□□□ -0.39
HDAC4-208ENST00000463007 MTMR10Q9NXD2 777 aa12.63□□□□□ -0.39
HDAC4-208ENST00000463007 ARHGEF38Q9NXL2 777 aa12.63□□□□□ -0.39
HDAC4-208ENST00000463007 STK39Q9UEW8 545 aa12.63□□□□□ -0.39
HDAC4-208ENST00000463007 SMIM35A0A1B0GVV1 85 aa12.62□□□□□ -0.39
HDAC4-208ENST00000463007 ARHGEF37A1IGU5 675 aa12.62□□□□□ -0.39
HDAC4-208ENST00000463007 TNFAIP8O95379 198 aa12.62□□□□□ -0.39
HDAC4-208ENST00000463007 DARSP14868 501 aaKnown RBP12.62□□□□□ -0.39
HDAC4-208ENST00000463007 ACAT1P24752 427 aaKnown RBP12.62□□□□□ -0.39
HDAC4-208ENST00000463007 MAGEA3P43357 314 aa12.62□□□□□ -0.39
HDAC4-208ENST00000463007 SULT1E1P49888 294 aa12.62□□□□□ -0.39
HDAC4-208ENST00000463007 PSMD7P51665 324 aa12.62□□□□□ -0.39
HDAC4-208ENST00000463007 HPCAP84074 193 aa12.62□□□□□ -0.39
HDAC4-208ENST00000463007 PDAP1Q13442 181 aaKnown RBP12.62□□□□□ -0.39
HDAC4-208ENST00000463007 C16orf72Q14CZ0 275 aa12.62□□□□□ -0.39
HDAC4-208ENST00000463007 UBXN11Q5T124 520 aa12.62□□□□□ -0.39
HDAC4-208ENST00000463007 OGFRL1Q5TC84 451 aaPredicted RBP12.62□□□□□ -0.39
HDAC4-208ENST00000463007 MCUQ8NE86 351 aa12.62□□□□□ -0.39
HDAC4-208ENST00000463007 DTNBP1Q96EV8 351 aa12.62□□□□□ -0.39
HDAC4-208ENST00000463007 CELF6Q96J87 481 aaKnown RBP12.62□□□□□ -0.39
HDAC4-208ENST00000463007 TSNARE1Q96NA8 513 aa12.62□□□□□ -0.39
HDAC4-208ENST00000463007 ACE2Q9BYF1 805 aaPredicted RBP12.62□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms