RNA–Protein interactions for RNA: ENST00000460696.1

NPHP4-204, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 3,967 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-204ENST00000460696 GSTA4O15217 222 aa11.81□□□□□ -0.52
NPHP4-204ENST00000460696 FKBP6O75344 327 aa11.81□□□□□ -0.52
NPHP4-204ENST00000460696 SEC24DO94855 1032 aaPredicted RBP11.81□□□□□ -0.52
NPHP4-204ENST00000460696 FGFR1P11362 822 aa11.81□□□□□ -0.52
NPHP4-204ENST00000460696 HARS2P49590 506 aaKnown RBP11.81□□□□□ -0.52
NPHP4-204ENST00000460696 WASHC5Q12768 1159 aa11.81□□□□□ -0.52
NPHP4-204ENST00000460696 NCBP2-AS2Q69YL0 99 aa11.81□□□□□ -0.52
NPHP4-204ENST00000460696 ULK2Q8IYT8 1036 aa11.81□□□□□ -0.52
NPHP4-204ENST00000460696 TMEM174Q8WUU8 243 aa11.81□□□□□ -0.52
NPHP4-204ENST00000460696 ULK4Q96C45 1275 aa11.81□□□□□ -0.52
NPHP4-204ENST00000460696 PPP1R2P1Q96PQ5 205 aa11.81□□□□□ -0.52
NPHP4-204ENST00000460696 KLHL5Q96PQ7 755 aa11.81□□□□□ -0.52
NPHP4-204ENST00000460696 USP29Q9HBJ7 922 aa11.81□□□□□ -0.52
NPHP4-204ENST00000460696 ABCC13Q9NSE7 274 aa11.81□□□□□ -0.52
NPHP4-204ENST00000460696 CCDC167Q9P0B6 97 aa11.81□□□□□ -0.52
NPHP4-204ENST00000460696 XPR1Q9UBH6 696 aa11.81□□□□□ -0.52
NPHP4-204ENST00000460696 RREB1Q92766 1687 aa11.81□□□□□ -0.52
NPHP4-204ENST00000460696 PLIN3O60664 434 aa11.81□□□□□ -0.52
NPHP4-204ENST00000460696 SERPINA6P08185 405 aa11.81□□□□□ -0.52
NPHP4-204ENST00000460696 MLNP12872 115 aa11.81□□□□□ -0.52
NPHP4-204ENST00000460696 PCID2Q5JVF3 399 aa11.81□□□□□ -0.52
NPHP4-204ENST00000460696 PPP1R15BQ5SWA1 713 aa11.81□□□□□ -0.52
NPHP4-204ENST00000460696 TAPT1Q6NXT6 567 aa11.81□□□□□ -0.52
NPHP4-204ENST00000460696 FBXO46Q6PJ61 603 aaPredicted RBP11.81□□□□□ -0.52
NPHP4-204ENST00000460696 CDHR3Q6ZTQ4 885 aa11.81□□□□□ -0.52
NPHP4-204ENST00000460696 SERPINB11Q96P15 392 aa11.81□□□□□ -0.52
NPHP4-204ENST00000460696 NFKBIZQ9BYH8 718 aa11.81□□□□□ -0.52
NPHP4-204ENST00000460696 MRPL40Q9NQ50 206 aaKnown RBP11.81□□□□□ -0.52
NPHP4-204ENST00000460696 COPG2Q9UBF2 871 aa11.81□□□□□ -0.52
NPHP4-204ENST00000460696 FETUBQ9UGM5 382 aa11.81□□□□□ -0.52
NPHP4-204ENST00000460696 FZD10Q9ULW2 581 aa11.81□□□□□ -0.52
NPHP4-204ENST00000460696 RP1L1Q8IWN7 2480 aaPredicted RBP11.81□□□□□ -0.52
NPHP4-204ENST00000460696 MAGEA13PA6NCF6 341 aa11.81□□□□□ -0.52
NPHP4-204ENST00000460696 F8W8V4 182 aa11.81□□□□□ -0.52
NPHP4-204ENST00000460696 XPAP23025 273 aaPredicted RBP11.81□□□□□ -0.52
NPHP4-204ENST00000460696 CD86P42081 329 aa11.81□□□□□ -0.52
NPHP4-204ENST00000460696 STX5Q13190 355 aa11.81□□□□□ -0.52
NPHP4-204ENST00000460696 NAB1Q13506 487 aa11.81□□□□□ -0.52
NPHP4-204ENST00000460696 PEX6Q13608 980 aa11.81□□□□□ -0.52
NPHP4-204ENST00000460696 PTK2BQ14289 1009 aa11.81□□□□□ -0.52
NPHP4-204ENST00000460696 TMEM259Q4ZIN3 620 aa11.81□□□□□ -0.52
NPHP4-204ENST00000460696 CAND1Q86VP6 1230 aaKnown RBP11.81□□□□□ -0.52
NPHP4-204ENST00000460696 LZTR1Q8N653 840 aa11.81□□□□□ -0.52
NPHP4-204ENST00000460696 SLC30A1Q9Y6M5 507 aa11.81□□□□□ -0.52
NPHP4-204ENST00000460696 F5H5T6 163 aa11.8□□□□□ -0.52
NPHP4-204ENST00000460696 USP1O94782 785 aa11.8□□□□□ -0.52
NPHP4-204ENST00000460696 HNRNPLP14866 589 aaKnown RBP eCLIP11.8□□□□□ -0.52
NPHP4-204ENST00000460696 PROZP22891 400 aa11.8□□□□□ -0.52
NPHP4-204ENST00000460696 PTPN3P26045 913 aa11.8□□□□□ -0.52
NPHP4-204ENST00000460696 RPL14P50914 215 aaKnown RBP11.8□□□□□ -0.52
NPHP4-204ENST00000460696 CACNA2D1P54289 1103 aa11.8□□□□□ -0.52
NPHP4-204ENST00000460696 CSE1LP55060 971 aaKnown RBP11.8□□□□□ -0.52
NPHP4-204ENST00000460696 DAOAP59103 153 aa11.8□□□□□ -0.52
NPHP4-204ENST00000460696 BTKQ06187 659 aa11.8□□□□□ -0.52
NPHP4-204ENST00000460696 FOXD4Q12950 439 aaPredicted RBP11.8□□□□□ -0.52
NPHP4-204ENST00000460696 SEMA5AQ13591 1074 aa11.8□□□□□ -0.52
NPHP4-204ENST00000460696 C6orf10Q5SRN2 563 aa11.8□□□□□ -0.52
NPHP4-204ENST00000460696 CLEC20AQ6ZU45 233 aa11.8□□□□□ -0.52
NPHP4-204ENST00000460696 CRYBG2Q8N1P7 616 aa11.8□□□□□ -0.52
NPHP4-204ENST00000460696 DQX1Q8TE96 717 aaKnown RBP11.8□□□□□ -0.52
NPHP4-204ENST00000460696 ASIC4Q96FT7 647 aa11.8□□□□□ -0.52
NPHP4-204ENST00000460696 C7orf26Q96N11 449 aa11.8□□□□□ -0.52
NPHP4-204ENST00000460696 CINPQ9BW66 212 aaPredicted RBP11.8□□□□□ -0.52
NPHP4-204ENST00000460696 POMKQ9H5K3 350 aa11.8□□□□□ -0.52
NPHP4-204ENST00000460696 TBC1D13Q9NVG8 400 aa11.8□□□□□ -0.52
NPHP4-204ENST00000460696 RCOR3Q9P2K3 495 aaPredicted RBP11.8□□□□□ -0.52
NPHP4-204ENST00000460696 MCM8Q9UJA3 840 aa11.8□□□□□ -0.52
NPHP4-204ENST00000460696 ADAMTSL1Q8N6G6 1762 aa11.8□□□□□ -0.52
NPHP4-204ENST00000460696 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP11.8□□□□□ -0.52
NPHP4-204ENST00000460696 PAGE1O75459 146 aa11.8□□□□□ -0.52
NPHP4-204ENST00000460696 TGDSO95455 350 aa11.8□□□□□ -0.52
NPHP4-204ENST00000460696 ESRRGP62508 458 aa11.8□□□□□ -0.52
NPHP4-204ENST00000460696 PDE1CQ14123 709 aaPredicted RBP11.8□□□□□ -0.52
NPHP4-204ENST00000460696 BTG3Q14201 252 aaPredicted RBP11.8□□□□□ -0.52
NPHP4-204ENST00000460696 ZNF792Q3KQV3 632 aa11.8□□□□□ -0.52
NPHP4-204ENST00000460696 RAP1GAP2Q684P5 730 aa11.8□□□□□ -0.52
NPHP4-204ENST00000460696 FSTL4Q6MZW2 842 aa11.8□□□□□ -0.52
NPHP4-204ENST00000460696 OSTM1Q86WC4 334 aa11.8□□□□□ -0.52
NPHP4-204ENST00000460696 PCYOX1LQ8NBM8 494 aa11.8□□□□□ -0.52
NPHP4-204ENST00000460696 GIPC2Q8TF65 315 aa11.8□□□□□ -0.52
NPHP4-204ENST00000460696 SIGLEC10Q96LC7 697 aa11.8□□□□□ -0.52
NPHP4-204ENST00000460696 ZNF184Q99676 751 aaPredicted RBP11.8□□□□□ -0.52
NPHP4-204ENST00000460696 DDX50Q9BQ39 737 aaKnown RBP11.8□□□□□ -0.52
NPHP4-204ENST00000460696 CD274Q9NZQ7 290 aa11.8□□□□□ -0.52
NPHP4-204ENST00000460696 FBXO5Q9UKT4 447 aa11.8□□□□□ -0.52
NPHP4-204ENST00000460696 ATP6AP2A0A1C7CYW4 349 aa11.8□□□□□ -0.52
NPHP4-204ENST00000460696 CBX4O00257 560 aa11.8□□□□□ -0.52
NPHP4-204ENST00000460696 DPYSL4O14531 572 aa11.8□□□□□ -0.52
NPHP4-204ENST00000460696 STX7O15400 261 aaKnown RBP11.8□□□□□ -0.52
NPHP4-204ENST00000460696 KPNA6O60684 536 aa11.8□□□□□ -0.52
NPHP4-204ENST00000460696 H2AFYO75367 372 aaKnown RBP11.8□□□□□ -0.52
NPHP4-204ENST00000460696 ATP6AP2O75787 350 aa11.8□□□□□ -0.52
NPHP4-204ENST00000460696 GLP2RO95838 553 aa11.8□□□□□ -0.52
NPHP4-204ENST00000460696 CCDC166P0CW27 439 aa11.8□□□□□ -0.52
NPHP4-204ENST00000460696 MRPS22P82650 360 aaKnown RBP11.8□□□□□ -0.52
NPHP4-204ENST00000460696 VEPH1Q14D04 833 aa11.8□□□□□ -0.52
NPHP4-204ENST00000460696 POLD3Q15054 466 aaPredicted RBP11.8□□□□□ -0.52
NPHP4-204ENST00000460696 SLC9A4Q6AI14 798 aa11.8□□□□□ -0.52
NPHP4-204ENST00000460696 PCDH20Q8N6Y1 951 aaKnown RBP11.8□□□□□ -0.52
NPHP4-204ENST00000460696 SCAMP5Q8TAC9 235 aa11.8□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms